FFCP PHASE1:Hg19::chr2:29297358..29297372,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=388939 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34383 | |||
|TSSclassifier=not | |||
|UniProt=A6NGG8 | |||
|association_with_transcript=-231bp_to_ENST00000331664,NM_001029883,uc002rmt.1_5end | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_3_at_C2orf71_5end | |||
|id=chr2:29297358..29297372,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000243;8.72e-09;15!CL:0000125;8.72e-09;15!CL:0000095;5.83e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,8.55e-09,15;CL:0000125,8.55e-09,15;CL:0000030,8.55e-09,15;CL:0000339,8.55e-09,15;CL:0000095,5.73e-08,17;CL:0000123,5.73e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.53e-44;3!UBERON:0006238;4.95e-13;10!CL:0000339;8.72e-09;15 | |||
|ontology_enrichment_disease=DOID:178!1.75e-12!1;DOID:326!1.75e-12!1;DOID:3978!1.75e-12!1;DOID:3394!1.75e-12!1;DOID:5844!1.75e-12!1;DOID:114!7.20e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:3093;4.94e-12;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,4.80e-12,11 | |||
|ontology_enrichment_uberon=UBERON:0001905!8.98e-24!2;UBERON:0002757!8.98e-24!2;UBERON:0010134!8.98e-24!2;UBERON:0002784!8.98e-24!2;UBERON:0005408!8.98e-24!2;UBERON:0001899!8.98e-24!2;UBERON:0002079!1.40e-12!1;UBERON:0003296!2.20e-12!4;UBERON:0010133!2.20e-12!4;UBERON:0002146!2.75e-12!1;UBERON:0005623!2.75e-12!1;UBERON:0003112!3.08e-12!1;UBERON:0000032!3.08e-12!1;UBERON:0005253!3.08e-12!1;UBERON:0003128!3.08e-12!1;UBERON:0002241!3.08e-12!1;UBERON:0001703!3.08e-12!1;UBERON:0004761!3.08e-12!1;UBERON:0009617!3.08e-12!1;UBERON:0002581!4.31e-12!1;UBERON:0007190!4.81e-12!1;UBERON:0000966!4.76e-10!5;UBERON:0005388!4.76e-10!5;UBERON:0001802!4.76e-10!5;UBERON:0000153!1.05e-08!129;UBERON:0007811!1.05e-08!129;UBERON:0007023!2.95e-08!115;UBERON:0003056!3.95e-08!61;UBERON:0000020!4.31e-08!23;UBERON:0000200!4.35e-08!6;UBERON:0001032!9.23e-08!24;UBERON:0004456!9.23e-08!24;UBERON:0000033!1.56e-07!123;UBERON:0001894!1.90e-07!7;UBERON:0006222!1.90e-07!7;UBERON:0003075!2.99e-07!86;UBERON:0007284!2.99e-07!86;UBERON:0005743!3.41e-07!86;UBERON:0000955!5.07e-07!69;UBERON:0006238!5.07e-07!69;UBERON:0002081!6.42e-07!2;UBERON:0002346!6.84e-07!90;UBERON:0000341!8.52e-07!2;UBERON:0007100!8.72e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.72e-66;2!UBERON:0002757;1.72e-66;2!UBERON:0010134;1.72e-66;2!UBERON:0005408;1.72e-66;2!UBERON:0001899;1.72e-66;2!UBERON:0003296;6.50e-34;4!UBERON:0010133;6.50e-34;4!UBERON:0002784;6.50e-34;4!UBERON:0000966;3.11e-27;5!UBERON:0005388;3.11e-27;5!UBERON:0001802;3.11e-27;5!UBERON:0001894;6.80e-20;7!UBERON:0000970;1.36e-15;20!UBERON:0002104;6.85e-15;21!UBERON:0000020;1.15e-13;23!UBERON:0001032;3.94e-13;24!UBERON:0004456;3.94e-13;24!UBERON:0000019;6.15e-08;19!UBERON:0000047;6.15e-08;19!UBERON:0004088;6.15e-08;19!UBERON:0010230;6.15e-08;19!UBERON:0001456;2.86e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.03e-66,2;UBERON:0002757,2.03e-66,2;UBERON:0010134,2.03e-66,2;UBERON:0005408,2.03e-66,2;UBERON:0001899,2.03e-66,2;UBERON:0003296,7.07e-34,4;UBERON:0010133,7.07e-34,4;UBERON:0002784,7.07e-34,4;UBERON:0000966,6.78e-23,6;UBERON:0005388,6.78e-23,6;UBERON:0001802,6.78e-23,6;UBERON:0001894,7.13e-20,7;UBERON:0006222,7.13e-20,7;UBERON:0000970,6.85e-15,21;UBERON:0002104,6.85e-15,21;UBERON:0000020,3.94e-13,24;UBERON:0001032,3.94e-13,24;UBERON:0004456,3.94e-13,24;UBERON:0003056,4.34e-09,61;UBERON:0000955,4.00e-08,68;UBERON:0006238,4.00e-08,68;UBERON:0000019,1.38e-07,20;UBERON:0000047,1.38e-07,20;UBERON:0010312,1.38e-07,20;UBERON:0004088,1.38e-07,20;UBERON:0010230,1.38e-07,20;UBERON:0003072,1.38e-07,20;UBERON:0004128,1.38e-07,20;UBERON:0003071,1.38e-07,20;UBERON:0001456,5.57e-07,22;UBERON:0001017,6.33e-07,81;UBERON:0003075,6.53e-07,82;UBERON:0007284,6.53e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.32746074185491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.399358000997982,0,0,0.335917362433631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.98055085770431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,4.28561468702629,13.1150651665341,0,0,0,0,0,0,0.131545547125698,0,0,0,0,0,0,0,0,3.21644448794954,9.63883031569632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.549702583727146,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0,0,0,0.342233301085281,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@C2orf71 | |||
}} |
Revision as of 02:24, 21 January 2014
Short description: | p3@C2orf71 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_C2orf71_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -231bp_to_ENST00000331664, NM_001029883, uc002rmt.1_5end |
EntrezGene: | C2orf71 |
HGNC: | 34383 |
UniProt: | A6NGG8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 8.55e-09 | 15 |
glial cell | 8.55e-09 | 15 |
glioblast | 8.55e-09 | 15 |
glioblast (sensu Vertebrata) | 8.55e-09 | 15 |
neuron associated cell | 5.73e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 5.73e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 2.03e-66 | 2 |
regional part of epithalamus | 2.03e-66 | 2 |
secretory circumventricular organ | 2.03e-66 | 2 |
circumventricular organ | 2.03e-66 | 2 |
epithalamus | 2.03e-66 | 2 |
gland of diencephalon | 7.07e-34 | 4 |
neuroendocrine gland | 7.07e-34 | 4 |
regional part of diencephalon | 7.07e-34 | 4 |
retina | 6.78e-23 | 6 |
photoreceptor array | 6.78e-23 | 6 |
posterior segment of eyeball | 6.78e-23 | 6 |
diencephalon | 7.13e-20 | 7 |
future diencephalon | 7.13e-20 | 7 |
eye | 6.85e-15 | 21 |
visual system | 6.85e-15 | 21 |
sense organ | 3.94e-13 | 24 |
sensory system | 3.94e-13 | 24 |
entire sense organ system | 3.94e-13 | 24 |
pre-chordal neural plate | 4.34e-09 | 61 |
brain | 4.00e-08 | 68 |
future brain | 4.00e-08 | 68 |
camera-type eye | 1.38e-07 | 20 |
simple eye | 1.38e-07 | 20 |
immature eye | 1.38e-07 | 20 |
ocular region | 1.38e-07 | 20 |
eyeball of camera-type eye | 1.38e-07 | 20 |
optic cup | 1.38e-07 | 20 |
optic vesicle | 1.38e-07 | 20 |
eye primordium | 1.38e-07 | 20 |
face | 5.57e-07 | 22 |
central nervous system | 6.33e-07 | 81 |
neural plate | 6.53e-07 | 82 |
presumptive neural plate | 6.53e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 4.80e-12 | 11 |