FFCP PHASE1:Hg19::chr20:35293472..35293493,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr20:35293472..35293493,- | |||
|id=chr20:35293472..35293493,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000135;1.26e-08;3!CL:0000346;1.26e-08;3!CL:1000428;1.26e-08;3!CL:0000388;1.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,1.12e-08,3;CL:0000388,1.12e-08,3;CL:0000346,1.30e-08,3;CL:1000428,1.30e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.96e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.67e-09!57;UBERON:0005068!7.67e-09!57;UBERON:0006241!7.67e-09!57;UBERON:0007135!7.67e-09!57;UBERON:0000955!1.96e-08!69;UBERON:0006238!1.96e-08!69;UBERON:0002346!1.16e-07!90;UBERON:0002616!1.72e-07!59;UBERON:0003075!1.99e-07!86;UBERON:0007284!1.99e-07!86;UBERON:0001017!2.02e-07!82;UBERON:0002780!2.36e-07!41;UBERON:0001890!2.36e-07!41;UBERON:0006240!2.36e-07!41;UBERON:0005743!5.13e-07!86;UBERON:0003080!5.36e-07!42;UBERON:0002020!6.53e-07!34;UBERON:0003528!6.53e-07!34;UBERON:0001893!7.20e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002771;1.48e-12;2!UBERON:0001875;2.74e-12;2!UBERON:0006514;2.74e-12;2!UBERON:0001869;3.22e-11;32!UBERON:0001893;9.83e-11;34!UBERON:0003528;3.07e-10;34!UBERON:0002020;3.07e-10;34!UBERON:0002791;3.12e-10;32!UBERON:0001950;3.51e-10;20!UBERON:0002619;2.38e-09;22!UBERON:0007846;1.26e-08;3!UBERON:0000043;1.26e-08;3!UBERON:0007845;1.26e-08;3!UBERON:0000412;1.26e-08;3!UBERON:0001992;1.26e-08;3!UBERON:0000956;2.43e-08;25!UBERON:0000203;2.43e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,1.48e-12,2;UBERON:0001875,2.07e-12,2;UBERON:0006514,2.07e-12,2;UBERON:0002791,3.64e-11,32;UBERON:0001869,3.64e-11,32;UBERON:0003528,1.50e-10,34;UBERON:0002020,1.50e-10,34;UBERON:0001893,1.50e-10,34;UBERON:0000073,1.81e-10,53;UBERON:0002616,1.81e-10,53;UBERON:0001950,3.46e-10,20;UBERON:0001049,6.32e-10,56;UBERON:0005068,6.32e-10,56;UBERON:0006241,6.32e-10,56;UBERON:0007135,6.32e-10,56;UBERON:0002619,2.35e-09,22;UBERON:0002780,7.51e-09,41;UBERON:0001890,7.51e-09,41;UBERON:0003080,7.51e-09,41;UBERON:0006240,7.51e-09,41;UBERON:0007846,1.12e-08,3;UBERON:0000043,1.12e-08,3;UBERON:0007845,1.12e-08,3;UBERON:0000412,1.30e-08,3;UBERON:0001992,1.30e-08,3;UBERON:0000956,2.40e-08,25;UBERON:0000203,2.40e-08,25;UBERON:0000955,4.19e-08,68;UBERON:0006238,4.19e-08,68;UBERON:0010314,5.40e-08,132;UBERON:0010371,1.39e-07,104;UBERON:0001017,7.57e-07,81;UBERON:0003075,7.57e-07,82;UBERON:0007284,7.57e-07,82 | |||
|phase1_expression=0.181678379270557,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0.123121058076788,0,0,0,0.136874425072884,0,0.0764134057479513,0.0821005894499457,0.236132343941038,0,0,0,0,0,0,0.0774672005803016,0.284338464974843,0,0,0,0.217010870715852,0,0.32389366601898,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0.605399502633369,0,0,0,0.212604299965044,0,0,0,0,0,0.19891667719909,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0.334372990781356,0,0,0,0,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0,0.14828656316206,0,0,0,0,0,0.506039384039006,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0.221729397462564,0.087834785693126,0,0,0.370784442784429,0,0,0,0.476981248610684,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0.993943903390637,0.12663051166458,0,0,0,0.560677600142307,1.06748995729705,0,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0.117434498643765,0,0.280901613404497,0,0,0.103325781175765,0,0,0,0,0,0.375355559615893,0,0.438977620880838,0,0,0.340296549480063,0.179389635688862,0.427114777637135,0,0,0,0,0,0,0.292311015483596,0.252433774244115,0,0,0,0.403008392910561,0,0,0,0.286804595389004,0,0,0,0,0,0.36497735907583,0,0,1.38134921352481,0,0,0.118306800039844,0,0.241011029883482,0.441175890929576,0.435758888184812,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0,0,0,0,0.144119953416961,0,0,0.381988425558278,0,0,0.102827492703324,0,0.285826432630578,0.112131084345361,0,0,0.129271715757778,0,0,0,0,0.257207374262142,0,0,0.285955987316295,0,0,0,0,0,0.301439377059586,0.871533458600294,0.599837947092342,0,0,0,0,0,0,0,0,0.179060963239896,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0.637938751653163,0.749007023947182,0,0,0.12269149171914,0.500170521059677,0.271265023699736,0.415941723061614,0.535286966391485,0.315404830067869,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0.215714200818617,0,0,0,0,0.248107807818777,0.153461973288062,0.841980283299221,0,0,0,0,0,0,0.0821271560138091,0,0.464841513839837,0,0.601519410909855,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0.183138929636687,0,0,0,0,0,0,0.460511024178389,0.137836572484531,0,0,0,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0.66343897524122,0,0,0,0,0.30982349809975,0,0,0,0,0,0.422215270595328,0.329294892959902,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0.443430153536676,0,0.507447609232169,0,0,0,0,0,0,0,0,0.962479855263359,0.245040215981032,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0.36408156524854,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0.0898683511473268,0,0,0,0,0,0.969332746095218,0.371072392647405,0,0,0,0,0.227586896570999,0.254253650292766,0,0,0.291604613383254,0.520874984799877,0,0.361789315876224,4.5774520895125,0.331737779793674,0.591095237907095,0,0.10893846351899,0,0,0,0,0.179515288819544,0.108647371922008,0,0,0,0,0,0,0.451191321234361,0,0.167821586975843,0,0,0.632994193584081,0.163232808159148,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0.134802265961354,0,0.234264445725339,0.364909578431332,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0.138674673013139,0.520679215005393,0,0.174118413160805,0.17472666824203,0,0.19351266257817,0,0.164230914106418,0.0969890164884194,0,0.90392296312213,0.137041924646751,0.397429223405979,0.126621591911757,0,0.0801588202515337,0,0.799238438328521,0,0,0.343189995723929,0,0,0,0,0.418411385249333,0,0.288950589901519,1.80126086612937,0,0,0.859530882839914,0,0,0.229160424011684,0,0.599037001496973,0.429226048136571,0,0.134366944973453,0,0,0.157566364614447,0.494495150286999,0.337017719270924,0.0984274815147488,0.0846733320657845,0,0,0.160753148465019,0.137539436597234,0,0,0,0.303747783290123,0,0.0788057072991982,0,0,0.35857467866569,0,0.714695326373367,0,0.25426853765475,0.542999601753713,0,0,0,0,0.340776043570843,0.113312091520126,0,1.32506888912221,0.517131825446202,0.13223260174269,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,5.12510312588245,0.1251909307065,0.573409195690071,0,0,0,0.249960815924213,0,0,0,0.468334905806882,0,0.149254802886874,0.233713309847224,0,0.189403005275089,0,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0.414706207840855,0,0,0.150257608997218,0.380805212168795,0.406870733204662,0.181848659202559,0.107410557042488,0,0,0.400027764663154,0,0.336749488765919,0,0.192619830407303,0,0,0,0,0,0,0.308801447160972,0.219284049578707,0.176689145945881,0.192914038270915,0,0.256241518587947,0,0.607719912354764,0,0,0.132864840313363,0,0.327609848846413,0.245772908753719,0,0,0.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| |||
|short_description=p@chr20:35293472..35293493,- | |||
}} |
Revision as of 11:05, 21 January 2014
Short description: | p@chr20:35293472..35293493, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_at_chr20:35293472..35293493, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 1.12e-08 | 3 |
tendon cell | 1.12e-08 | 3 |
hair follicle dermal papilla cell | 1.30e-08 | 3 |
stem cell of epidermis | 1.30e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 1.48e-12 | 2 |
globus pallidus | 2.07e-12 | 2 |
pallidum | 2.07e-12 | 2 |
regional part of telencephalon | 3.64e-11 | 32 |
cerebral hemisphere | 3.64e-11 | 32 |
brain grey matter | 1.50e-10 | 34 |
gray matter | 1.50e-10 | 34 |
telencephalon | 1.50e-10 | 34 |
regional part of nervous system | 1.81e-10 | 53 |
regional part of brain | 1.81e-10 | 53 |
neocortex | 3.46e-10 | 20 |
neural tube | 6.32e-10 | 56 |
neural rod | 6.32e-10 | 56 |
future spinal cord | 6.32e-10 | 56 |
neural keel | 6.32e-10 | 56 |
regional part of cerebral cortex | 2.35e-09 | 22 |
regional part of forebrain | 7.51e-09 | 41 |
forebrain | 7.51e-09 | 41 |
anterior neural tube | 7.51e-09 | 41 |
future forebrain | 7.51e-09 | 41 |
dense regular connective tissue | 1.12e-08 | 3 |
tendon | 1.12e-08 | 3 |
regular connective tissue | 1.12e-08 | 3 |
dermal papilla | 1.30e-08 | 3 |
papillary layer of dermis | 1.30e-08 | 3 |
cerebral cortex | 2.40e-08 | 25 |
pallium | 2.40e-08 | 25 |
brain | 4.19e-08 | 68 |
future brain | 4.19e-08 | 68 |
structure with developmental contribution from neural crest | 5.40e-08 | 132 |
ecto-epithelium | 1.39e-07 | 104 |
central nervous system | 7.57e-07 | 81 |
neural plate | 7.57e-07 | 82 |
presumptive neural plate | 7.57e-07 | 82 |