FFCP PHASE1:Hg19::chr3:5229410..5229426,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9695 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18967 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=5bp_to_ENST00000465369_5end | |||
|description=CAGE_peak_2_at_EDEM1_5end | |||
|id=chr3:5229410..5229426,+ | |||
|ontology_enrichment_celltype=CL:0000738!8.13e-43!140;CL:0000037!4.53e-37!172;CL:0000566!4.53e-37!172;CL:0000988!1.52e-35!182;CL:0002087!2.73e-35!119;CL:0002032!2.27e-34!165;CL:0000837!2.27e-34!165;CL:0002031!1.49e-33!124;CL:0002371!3.77e-24!591;CL:0000134!4.81e-24!358;CL:0002320!6.66e-22!365;CL:0000144!9.76e-22!625;CL:0000063!6.56e-21!578;CL:0000723!7.00e-21!436;CL:0000766!1.09e-20!76;CL:0000048!1.67e-20!430;CL:0000557!6.65e-20!71;CL:0000034!2.18e-19!444;CL:0002009!3.32e-19!65;CL:0000003!6.35e-19!722;CL:0002194!3.08e-18!63;CL:0000576!3.08e-18!63;CL:0000040!3.08e-18!63;CL:0000559!3.08e-18!63;CL:0000763!5.14e-18!112;CL:0000049!5.14e-18!112;CL:0000219!9.84e-18!390;CL:0000839!7.80e-17!70;CL:0000012!1.07e-16!682;CL:0002057!2.73e-16!42;CL:0000548!3.35e-16!679;CL:0000004!3.35e-16!679;CL:0000255!3.35e-16!679;CL:0000542!7.88e-16!53;CL:0000051!7.88e-16!53;CL:0000838!2.11e-15!52;CL:0000860!2.36e-14!45;CL:0000945!3.77e-13!24;CL:0000826!3.77e-13!24;CL:0000236!8.56e-09!14;CL:0000451!3.24e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.17e-16;33!CL:0002057;1.17e-16;33!CL:0000473;6.48e-15;39!CL:0000234;6.48e-15;39!CL:0000945;2.62e-13;24!CL:0000576;6.50e-11;48!CL:0000738;2.09e-10;136!CL:0002087;2.48e-10;104!CL:0000542;1.51e-09;53!CL:0000766;1.95e-09;69!CL:0000236;1.83e-08;13!CL:0000451;2.45e-07;10!CL:0000219;5.08e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,5.93e-45,136;CL:0000037,8.21e-39,168;CL:0002087,3.20e-37,115;CL:0000988,6.90e-37,177;CL:0002032,4.62e-36,161;CL:0000837,4.62e-36,161;CL:0002031,2.22e-35,120;CL:0000134,5.66e-25,354;CL:0002320,1.36e-22,361;CL:0000766,1.46e-22,72;CL:0000557,8.08e-22,67;CL:0000723,9.94e-22,433;CL:0000048,2.50e-21,427;CL:0002009,4.53e-21,61;CL:0000034,2.60e-20,441;CL:0002194,4.57e-20,59;CL:0000576,4.57e-20,59;CL:0000040,4.57e-20,59;CL:0000559,4.57e-20,59;CL:0000763,2.37e-19,108;CL:0000049,2.37e-19,108;CL:0000839,1.98e-18,66;CL:0000219,2.54e-18,386;CL:0000473,1.91e-17,48;CL:0000234,1.91e-17,48;CL:0000860,2.18e-16,42;CL:0002057,2.18e-16,42;CL:0000542,6.33e-16,53;CL:0000051,6.33e-16,53;CL:0000838,1.71e-15,52;CL:0000945,3.15e-13,24;CL:0000826,3.15e-13,24;CL:0000236,7.66e-09,14;CL:0000451,2.97e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;1.89e-12;42!CL:0000051;1.51e-09;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.31e-23!102;UBERON:0003061!7.31e-23!102;UBERON:0002193!4.17e-21!112;UBERON:0002405!5.45e-20!115;UBERON:0002384!7.36e-20!375;UBERON:0002371!6.09e-18!80;UBERON:0001474!1.90e-16!86;UBERON:0004765!1.88e-13!101;UBERON:0001434!1.88e-13!101;UBERON:0003081!5.11e-13!216;UBERON:0002204!4.47e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.41e-24,98;UBERON:0003061,1.41e-24,98;UBERON:0002193,1.36e-22,108;UBERON:0002384,1.35e-20,371;UBERON:0002405,2.52e-20,93;UBERON:0002371,1.25e-19,76;UBERON:0001474,6.15e-18,82;UBERON:0004765,2.04e-16,90;UBERON:0003081,3.04e-14,203;UBERON:0001434,3.46e-13,100;UBERON:0000926,7.55e-09,315;UBERON:0004120,7.55e-09,315;UBERON:0006603,7.55e-09,315;UBERON:0002204,8.59e-08,167 | |||
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| |||
|short_description=p2@EDEM1 | |||
}} |
Revision as of 17:06, 21 January 2014
Short description: | p2@EDEM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_EDEM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 5bp_to_ENST00000465369_5end |
EntrezGene: | EDEM1 |
HGNC: | 18967 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.41e-24 | 98 |
blood island | 1.41e-24 | 98 |
hemolymphoid system | 1.36e-22 | 108 |
connective tissue | 1.35e-20 | 371 |
immune system | 2.52e-20 | 93 |
bone marrow | 1.25e-19 | 76 |
bone element | 6.15e-18 | 82 |
skeletal element | 2.04e-16 | 90 |
lateral plate mesoderm | 3.04e-14 | 203 |
skeletal system | 3.46e-13 | 100 |
mesoderm | 7.55e-09 | 315 |
mesoderm-derived structure | 7.55e-09 | 315 |
presumptive mesoderm | 7.55e-09 | 315 |
musculoskeletal system | 8.59e-08 | 167 |