FFCP PHASE1:Hg19::chr3:52719912..52719995,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55193 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30064 | |||
|TSSclassifier=strong | |||
|UniProt=C9JQF1 | |||
|association_with_transcript=0bp_to_ENST00000420148_5end | |||
|description=CAGE_peak_1_at_PBRM1_5end | |||
|id=chr3:52719912..52719995,- | |||
|ontology_enrichment_celltype=CL:0000738!2.44e-16!140;CL:0000037!1.83e-15!172;CL:0000566!1.83e-15!172;CL:0000839!4.29e-15!70;CL:0002031!4.54e-15!124;CL:0000988!1.63e-14!182;CL:0000557!1.68e-14!71;CL:0000219!2.14e-14!390;CL:0002032!2.18e-14!165;CL:0000837!2.18e-14!165;CL:0002087!5.26e-14!119;CL:0000766!8.07e-14!76;CL:0002194!1.75e-13!63;CL:0000576!1.75e-13!63;CL:0000040!1.75e-13!63;CL:0000559!1.75e-13!63;CL:0002009!4.54e-13!65;CL:0000763!6.49e-13!112;CL:0000049!6.49e-13!112;CL:0000860!1.36e-12!45;CL:0002057!1.48e-12!42;CL:0000134!2.23e-12!358;CL:0002320!3.31e-11!365;CL:0000048!5.47e-09!430;CL:0000723!9.33e-09!436;CL:0000034!1.67e-08!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.40e-13;33!CL:0002057;2.40e-13;33!CL:0000473;4.37e-11;39!CL:0000234;4.37e-11;39!CL:0000576;2.39e-09;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.93e-16,136;CL:0000037,3.95e-15,168;CL:0000839,5.86e-15,66;CL:0002031,8.82e-15,120;CL:0000988,1.44e-14,177;CL:0000557,2.39e-14,67;CL:0000219,2.39e-14,386;CL:0002032,4.61e-14,161;CL:0000837,4.61e-14,161;CL:0002087,1.01e-13,115;CL:0000766,1.25e-13,72;CL:0002194,2.37e-13,59;CL:0000576,2.37e-13,59;CL:0000040,2.37e-13,59;CL:0000559,2.37e-13,59;CL:0002009,6.45e-13,61;CL:0000763,1.23e-12,108;CL:0000049,1.23e-12,108;CL:0000860,1.48e-12,42;CL:0002057,1.48e-12,42;CL:0000473,2.01e-12,48;CL:0000234,2.01e-12,48;CL:0000134,2.39e-12,354;CL:0002320,3.58e-11,361;CL:0000048,3.61e-09,427;CL:0000723,6.21e-09,433;CL:0000034,1.12e-08,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.80e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.02e-16!102;UBERON:0003061!2.02e-16!102;UBERON:0002193!1.09e-14!112;UBERON:0001474!5.42e-14!86;UBERON:0002371!1.06e-12!80;UBERON:0004765!1.81e-12!101;UBERON:0001434!1.81e-12!101;UBERON:0002384!1.11e-11!375;UBERON:0002405!6.50e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.50e-16,98;UBERON:0003061,3.50e-16,98;UBERON:0002193,2.03e-14,108;UBERON:0001474,9.00e-14,82;UBERON:0002371,1.75e-12,76;UBERON:0004765,4.63e-12,90;UBERON:0002384,1.22e-11,371;UBERON:0002405,1.50e-11,93;UBERON:0001434,1.61e-11,100 | |||
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| |||
|short_description=p1@PBRM1 | |||
}} |
Revision as of 19:12, 21 January 2014
Short description: | p1@PBRM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PBRM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000420148_5end |
EntrezGene: | PBRM1 |
HGNC: | 30064 |
UniProt: | C9JQF1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.93e-16 | 136 |
hematopoietic stem cell | 3.95e-15 | 168 |
myeloid lineage restricted progenitor cell | 5.86e-15 | 66 |
hematopoietic lineage restricted progenitor cell | 8.82e-15 | 120 |
hematopoietic cell | 1.44e-14 | 177 |
granulocyte monocyte progenitor cell | 2.39e-14 | 67 |
motile cell | 2.39e-14 | 386 |
hematopoietic oligopotent progenitor cell | 4.61e-14 | 161 |
hematopoietic multipotent progenitor cell | 4.61e-14 | 161 |
nongranular leukocyte | 1.01e-13 | 115 |
myeloid leukocyte | 1.25e-13 | 72 |
monopoietic cell | 2.37e-13 | 59 |
monocyte | 2.37e-13 | 59 |
monoblast | 2.37e-13 | 59 |
promonocyte | 2.37e-13 | 59 |
macrophage dendritic cell progenitor | 6.45e-13 | 61 |
myeloid cell | 1.23e-12 | 108 |
common myeloid progenitor | 1.23e-12 | 108 |
classical monocyte | 1.48e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.48e-12 | 42 |
defensive cell | 2.01e-12 | 48 |
phagocyte | 2.01e-12 | 48 |
mesenchymal cell | 2.39e-12 | 354 |
connective tissue cell | 3.58e-11 | 361 |
multi fate stem cell | 3.61e-09 | 427 |
somatic stem cell | 6.21e-09 | 433 |
stem cell | 1.12e-08 | 441 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.50e-16 | 98 |
blood island | 3.50e-16 | 98 |
hemolymphoid system | 2.03e-14 | 108 |
bone element | 9.00e-14 | 82 |
bone marrow | 1.75e-12 | 76 |
skeletal element | 4.63e-12 | 90 |
connective tissue | 1.22e-11 | 371 |
immune system | 1.50e-11 | 93 |
skeletal system | 1.61e-11 | 100 |