FFCP PHASE1:Hg19::chr5:34656450..34656523,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=26064 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14873 | |||
|TSSclassifier=strong | |||
|UniProt=D6RB25,D6RF74 | |||
|association_with_transcript=0bp_to_ENST00000510319,ENST00000514527,ENST00000514931_5end | |||
|description=CAGE_peak_1_at_RAI14_5end | |||
|id=chr5:34656450..34656523,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.22e-31!180;CL:0002321!2.76e-22!248;CL:0000220!4.86e-22!246;CL:0000222!3.71e-15!119;CL:0000680!9.03e-14!57;CL:0000056!9.03e-14!57;CL:0000355!9.03e-14!57;CL:0000187!7.48e-13!54;CL:0000393!1.14e-12!60;CL:0000211!1.14e-12!60;CL:0000057!2.18e-12!75;CL:0000183!3.32e-11!59;CL:0000192!9.85e-11!42;CL:0000514!9.85e-11!42;CL:0000359!2.01e-09!32;CL:0000548!1.09e-07!679;CL:0000004!1.09e-07!679;CL:0000255!1.09e-07!679;CL:0000066!2.23e-07!254;CL:0000012!5.03e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.13e-09;32!CL:0000192;4.39e-08;43!CL:0000187;1.23e-07;55!CL:0000393;4.02e-07;61!CL:0000211;4.02e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.72e-22,250;CL:0000222,4.78e-15,121;CL:0000680,4.88e-14,58;CL:0000056,4.88e-14,58;CL:0000355,4.88e-14,58;CL:0000187,4.10e-13,55;CL:0000057,5.27e-13,76;CL:0000393,6.26e-13,61;CL:0000211,6.26e-13,61;CL:0000192,5.63e-11,43;CL:0000514,5.63e-11,43;CL:0000359,1.81e-09,32;CL:0000066,3.58e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;4.39e-08;43!CL:0000355;1.65e-07;58 | |||
|ontology_enrichment_disease=DOID:193!5.95e-10!29;DOID:120!1.02e-09!27;DOID:2394!1.32e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:193;4.53e-10;29!DOID:120;7.68e-10;27!DOID:2394;1.17e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:193,5.30e-10,29;DOID:120,9.09e-10,27;DOID:2394,1.18e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0005256!1.16e-17!143;UBERON:0000914!3.44e-16!83;UBERON:0002329!3.44e-16!83;UBERON:0003077!3.44e-16!83;UBERON:0003059!3.44e-16!83;UBERON:0007282!3.44e-16!83;UBERON:0009618!3.44e-16!83;UBERON:0007285!3.44e-16!83;UBERON:0002100!5.93e-15!216;UBERON:0000475!6.07e-15!365;UBERON:0000490!3.03e-14!138;UBERON:0004290!3.42e-13!70;UBERON:0000486!4.36e-13!82;UBERON:0000468!6.02e-13!659;UBERON:0001134!2.58e-12!61;UBERON:0002036!2.58e-12!61;UBERON:0003082!2.58e-12!61;UBERON:0002385!3.06e-12!63;UBERON:0001015!3.06e-12!63;UBERON:0000383!3.06e-12!63;UBERON:0003104!4.88e-12!238;UBERON:0009142!4.88e-12!238;UBERON:0000481!6.28e-12!347;UBERON:0000467!1.54e-11!625;UBERON:0002049!2.34e-11!79;UBERON:0007798!2.34e-11!79;UBERON:0000480!3.02e-11!626;UBERON:0003914!1.29e-10!118;UBERON:0000119!1.29e-10!312;UBERON:0000483!1.77e-10!309;UBERON:0004872!2.23e-10!84;UBERON:0001981!6.53e-09!60;UBERON:0007500!6.53e-09!60;UBERON:0004537!6.53e-09!60;UBERON:0006965!6.53e-09!60;UBERON:0000055!8.77e-09!69;UBERON:0005156!9.38e-09!59;UBERON:0000990!9.38e-09!59;UBERON:0000922!3.94e-08!612;UBERON:0001637!6.21e-08!42;UBERON:0003509!6.21e-08!42;UBERON:0004572!6.21e-08!42;UBERON:0003102!7.09e-08!95;UBERON:0002050!1.23e-07!605;UBERON:0005423!1.23e-07!605;UBERON:0003134!1.90e-07!37;UBERON:0000474!1.90e-07!37;UBERON:0000923!2.21e-07!604;UBERON:0005291!2.21e-07!604;UBERON:0006598!2.21e-07!604;UBERON:0002532!2.21e-07!604;UBERON:0004573!2.98e-07!33;UBERON:0004571!2.98e-07!33;UBERON:0003133!4.19e-07!48;UBERON:0004535!6.87e-07!110;UBERON:0003100!7.68e-07!41 | |||
|ontology_enrichment_uberon_v019=UBERON:0003134;3.00e-07;33!UBERON:0000992;9.68e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,2.91e-16,160;UBERON:0009142,2.91e-16,160;UBERON:0000490,1.12e-15,148;UBERON:0005256,1.77e-14,122;UBERON:0002329,1.85e-13,71;UBERON:0003059,1.85e-13,71;UBERON:0007282,1.85e-13,71;UBERON:0004290,1.85e-13,71;UBERON:0009618,1.85e-13,71;UBERON:0007524,2.77e-13,73;UBERON:0000486,2.91e-13,83;UBERON:0003077,5.99e-13,72;UBERON:0007285,5.99e-13,72;UBERON:0001134,1.42e-12,62;UBERON:0002036,1.42e-12,62;UBERON:0003082,1.42e-12,62;UBERON:0002385,1.68e-12,64;UBERON:0001015,1.68e-12,64;UBERON:0000383,1.68e-12,64;UBERON:0007503,1.78e-12,78;UBERON:0002100,4.30e-12,199;UBERON:0000119,3.54e-11,309;UBERON:0000483,4.88e-11,306;UBERON:0002049,6.20e-11,78;UBERON:0007798,6.20e-11,78;UBERON:0003914,1.72e-10,117;UBERON:0004872,6.62e-10,83;UBERON:0003102,4.99e-09,99;UBERON:0005156,8.50e-09,59;UBERON:0000990,8.50e-09,59;UBERON:0007500,1.75e-08,59;UBERON:0001981,1.75e-08,59;UBERON:0004537,1.75e-08,59;UBERON:0006965,1.75e-08,59;UBERON:0000055,2.08e-08,68;UBERON:0001637,5.69e-08,42;UBERON:0003509,5.69e-08,42;UBERON:0004572,5.69e-08,42;UBERON:0000922,1.57e-07,592;UBERON:0003134,1.75e-07,37;UBERON:0000474,1.75e-07,37;UBERON:0004573,2.76e-07,33;UBERON:0004571,2.76e-07,33;UBERON:0003133,3.88e-07,48;UBERON:0003100,7.14e-07,41 | |||
|phase1_expression=12.1724514111273,13.274232481241,11.2763523276777,16.0117277365009,5.81049422755474,12.2127393374052,15.1979926900986,29.0591141776342,2.87304191019822,12.532430761577,6.97801167972428,3.27662058195258,3.4289707169699,13.8618315315252,14.5814845320283,30.2546315903299,27.121253761079,21.1789926212338,35.619094311707,6.03293184576261,7.75202626728161,5.95563970808367,31.7721945715473,30.2492479411074,34.398683248976,0,0,0,0,0,0.77408061658038,6.43594857135249,5.4217065380085,4.43704812200145,0,0,0,0.553995408531877,0,0,0,0,0.77272670290256,3.19876125315042,1.51150377475524,3.15359279544161,0.697287110717054,0.822335776043652,0.929119112685311,0.28769239232215,0,0,0.689491361473237,0,0,1.12945403725563,3.0019676506363,1.57306439111559,0.918251677112708,0.320929027076094,0,0.989553900560148,0,0.852449501065388,0.290209238628584,0.56738522469114,0,0.502497330513487,0,0.217188844705117,0.605399502633369,0,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.127986611154418,0,0,0,0.201606743224732,0,0,12.1903433156981,10.0605128955545,35.2900670688144,14.4575660953827,11.5307719446255,19.8439730976328,15.905718941022,10.705967146658,34.6942778992129,42.3503149153497,54.8089062725107,7.7932549921139,1.09288586487763,2.22470665670658,1.62273696827342,1.39303789839414,2.26028532882071,0,0,0,9.34183314623514,6.881876760849,12.1499175562658,8.47961912886015,5.03399323451887,16.507082516404,9.61376846069329,19.1228401785303,23.8363396000096,23.7651635062916,10.0707329277287,15.2054421143703,6.10155143870424,15.4418493745265,9.72170337458112,14.7344551668732,19.3095260458506,21.3961812918312,12.2653309972707,14.2389848935219,19.785788344484,0,0,2.61656431285521,21.866765874594,24.8195802862576,61.0406323548939,15.7760141411848,17.0240823455211,27.473202406973,44.8345782064761,17.2667283892012,22.4071945487832,15.8958593042232,22.5577426296573,6.81108424402191,11.5235184896,8.20125011418288,32.4646479903533,11.9799082524334,33.775401804707,12.0957533603078,12.6260896607143,13.3428266367136,29.1940464894497,17.8109760102064,18.2886632681105,38.0160914330257,53.1623897948897,4.55080680969013,5.03032699271367,16.3286030535444,17.0161187025871,47.3779637477953,29.4115005990161,35.5525843126863,66.4052220367158,26.2028343099649,26.7290557176404,27.1217883799581,38.5716060110403,19.2058301494017,28.0302879528554,19.0653999633766,15.6338159318535,24.9788971717074,24.9438733212668,25.4958111986556,28.8116182750397,24.893492750097,15.620422070731,16.523344109333,12.5474838309761,17.0069550783701,34.638757315036,28.6804595389004,15.4906606784586,14.4457447470419,9.87648514390906,11.5063771067061,20.9426306226772,12.0442528495024,15.6449532329816,18.6539872075937,9.66944449467364,21.360924689471,24.5439023767659,4.73227200159376,5.56329477257736,2.6511213287183,3.30881918197182,4.79334777003293,4.03360052488864,3.7752766284846,4.51309369788296,3.46272441251751,3.69077727312324,7.01208869017229,4.9388881359768,4.41026134156626,6.33775174109154,7.86261773342101,7.68026878685825,0,7.2563178740437,73.2594549974704,9.32877425973317,1.1240175325762,6.8359701239909,10.6476711932309,5.53874119027552,2.07986957055916,57.7325368101093,34.1994694676477,76.5504686417557,19.489470447745,11.1116523018387,20.1669401368674,0,0.858486162094873,0.492434012174795,12.4022260523796,10.7014436847884,19.6841051372232,51.7384954852487,39.980577422353,12.8068687465073,11.3347236020445,6.51750554580859,31.0377839874444,4.66656700270098,7.46381215946779,7.63835753109896,4.16600030307054,12.0011020212199,9.54971063895694,3.51652341630141,5.13217338068116,15.4241239054985,11.7133792559128,18.5787181209876,7.06425831375773,10.899001720832,18.7746011701632,49.8988822825022,7.15312891703765,32.121504597128,79.5154968588763,49.9235697174557,6.68739173081569,1.41849132023278,6.92697665441858,38.3181023003835,14.1081617401775,5.76268235746538,36.4824526408983,42.6470338491055,23.7585561880029,59.684996657798,40.9620725542138,75.1796893689069,1.2162378064119,0,0,24.9209849711246,17.2292903751171,45.6438096130299,25.9158538934967,34.1090695433636,23.8151081109061,0,0,0,0,6.09827098133912,13.0139853857622,9.27946575333234,8.04078073604874,10.2070200264506,0,0,0,18.1583407744327,7.00238729483548,19.8023467300807,39.930405413915,31.4035020283005,34.5368288924317,35.3767073277994,14.7463588866582,18.1926003244788,12.4167685551006,33.8755055253073,28.9459594610474,27.6289894008503,2.54541504701563,1.37257369524342,0,0,0.213455115606889,1.21251028578504,8.32177197552485,5.74541557326393,12.6534981987576,39.4397271350321,19.084886421449,17.4269242987753,24.0502407061351,25.8974813041208,11.8734453155993,51.1976183424816,52.0255855167462,35.8895671780346,42.0596087638733,36.3738484579672,12.4485233079371,29.2739446642796,5.70902131402557,28.2443542484933,24.7643988489135,31.7321084201806,3.60959690325929,37.9685611924765,11.7652465376528,7.3069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| |||
|short_description=p1@RAI14 | |||
}} |
Revision as of 05:00, 22 January 2014
Short description: | p1@RAI14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAI14_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000510319, ENST00000514527, ENST00000514931_5end |
EntrezGene: | RAI14 |
HGNC: | 14873 |
UniProt: | D6RB25D6RF74 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.72e-22 | 250 |
mesodermal cell | 4.78e-15 | 121 |
muscle precursor cell | 4.88e-14 | 58 |
myoblast | 4.88e-14 | 58 |
multi-potent skeletal muscle stem cell | 4.88e-14 | 58 |
muscle cell | 4.10e-13 | 55 |
fibroblast | 5.27e-13 | 76 |
electrically responsive cell | 6.26e-13 | 61 |
electrically active cell | 6.26e-13 | 61 |
smooth muscle cell | 5.63e-11 | 43 |
smooth muscle myoblast | 5.63e-11 | 43 |
vascular associated smooth muscle cell | 1.81e-09 | 32 |
epithelial cell | 3.58e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 5.30e-10 | 29 |
female reproductive organ cancer | 9.09e-10 | 27 |
ovarian cancer | 1.18e-09 | 14 |