FFCP PHASE1:Hg19::chr5:82835043..82835057,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_at_chr5:82835043..82835057,+ | |||
|id=chr5:82835043..82835057,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.38e-18!42;CL:0000860!1.86e-16!45;CL:0002194!4.66e-10!63;CL:0000576!4.66e-10!63;CL:0000040!4.66e-10!63;CL:0000559!4.66e-10!63;CL:0000048!1.97e-09!430;CL:0002009!2.16e-09!65;CL:0000034!3.74e-09!444;CL:0000723!9.10e-09!436;CL:0002334!5.41e-08!12;CL:0000839!6.34e-08!70;CL:0000557!1.16e-07!71;CL:0000393!3.13e-07!60;CL:0000211!3.13e-07!60;CL:0000055!7.55e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.73e-28;33!CL:0002057;1.73e-28;33!CL:0000473;4.68e-20;39!CL:0000234;4.68e-20;39!CL:0000576;1.40e-16;48!CL:1000306;1.78e-12;4!CL:0002547;1.78e-12;4!CL:0000135;1.42e-10;3!CL:0000388;1.42e-10;3!CL:0000766;3.01e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.64e-29,42;CL:0002057,3.64e-29,42;CL:0000473,8.42e-25,48;CL:0000234,8.42e-25,48;CL:0002194,1.04e-18,59;CL:0000576,1.04e-18,59;CL:0000040,1.04e-18,59;CL:0000559,1.04e-18,59;CL:0002009,6.29e-18,61;CL:0000839,3.54e-16,66;CL:0000557,7.37e-16,67;CL:0000766,2.12e-14,72;CL:1000306,2.46e-12,4;CL:0002547,2.46e-12,4;CL:0000135,1.59e-10,3;CL:0000388,1.59e-10,3;CL:0000048,3.46e-10,427;CL:0000723,7.13e-10,433;CL:0000034,1.81e-09,441;CL:0000134,2.22e-09,354;CL:0002320,5.50e-09,361;CL:0002087,4.98e-08,115;CL:0000763,6.11e-08,108;CL:0000049,6.11e-08,108;CL:0000219,1.32e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;8.79e-23;42 | |||
|ontology_enrichment_disease=DOID:2394!1.49e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.86e-13;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.32e-13,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.23e-10!167;UBERON:0000468!5.81e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;1.78e-12;4!UBERON:0000415;1.78e-12;4!UBERON:0007240;1.78e-12;4!UBERON:0005742;1.78e-12;4!UBERON:0005734;1.78e-12;4!UBERON:0004664;1.78e-12;4!UBERON:0004663;1.78e-12;4!UBERON:0007846;1.42e-10;3!UBERON:0000043;1.42e-10;3!UBERON:0007845;1.42e-10;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.26e-13,76;UBERON:0000415,2.46e-12,4;UBERON:0007240,2.46e-12,4;UBERON:0005742,2.46e-12,4;UBERON:0005734,2.46e-12,4;UBERON:0004664,2.46e-12,4;UBERON:0004663,2.46e-12,4;UBERON:0001474,5.08e-12,82;UBERON:0002390,2.04e-11,98;UBERON:0003061,2.04e-11,98;UBERON:0003081,4.26e-11,203;UBERON:0007846,1.59e-10,3;UBERON:0000043,1.59e-10,3;UBERON:0007845,1.59e-10,3;UBERON:0004797,1.64e-10,7;UBERON:0004765,1.67e-10,90;UBERON:0002405,5.26e-10,93;UBERON:0002193,7.49e-10,108;UBERON:0002384,3.86e-09,371;UBERON:0001434,5.83e-09,100;UBERON:0000926,6.90e-09,315;UBERON:0004120,6.90e-09,315;UBERON:0006603,6.90e-09,315;UBERON:0002204,8.06e-09,167 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.845726424575827,0,0,1.74467704820074,0,0,0.261185628199839,0,0,0,0,0,0,0,1.80808358407193,0.730310090387373,1.46379839637152,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40381113229099,1.95309783644267,0,0.32389366601898,0,2.03557534291391,1.88937971844405,0.727752183563449,3.95129362739664,1.6446715520873,0.309706370895104,2.58923153089935,0.768482119587302,0.236482229888585,2.41321976515633,0.645484683583826,0,4.32957380947991,1.91034305040492,0.224723484445085,2.44867113896722,0.962787081228281,1.27867425159808,2.30895910130701,1.39624560335142,2.13112375266347,6.96502172708602,1.13477044938228,0,5.7787193009051,2.60741459210101,0.217188844705117,1.81619850790011,0.368277635987565,0,0,0,0.419317291016752,1.01095768031846,0.750884464207532,0.964353520182481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0.289693037921647,0,0,0.0945348171640679,0.443458794925128,0.43917392846563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,1.51956613997496,1.72131935057184,1.14734648299525,1.06400514659507,0.560677600142307,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0.247266929278557,0,0,0,0.375355559615893,0,0,0,0,0.567160915800105,0.717558542755448,0.427114777637135,0,0,0.103052529238439,0.515281080091258,0.558350568994769,1.0126579934476,0.389748020644795,0,0,0.323292113637624,0.710019185033229,0.302256294682921,0,0,0,0,0.365921118388786,0.132529768321485,0.232387885739037,0.207322110030741,0,0.36497735907583,0,1.28648187638577,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,1.17408694235822,0,0,0,0,0,0,0,0,0,0.335964256397719,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0.775630294546667,0,0,0.797814349754612,1.04007436911366,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.537182889719687,0,0,0.215627574859517,0,0,0,0,0.167516265334349,1.27587750330633,0,0,0,0.24538298343828,0.500170521059677,0,1.45579603071565,1.24900292158013,0.788512075169673,0.468565659970853,0,0,0,0,0,0.434418072340414,0,0,0.206768026122887,1.2942852049117,0.533637789017222,0,0,0,1.98486246255021,0.61384789315225,1.96462066103151,0.640695746278505,1.02341449813341,3.21707842287215,0,0.462629081407967,0.355123450626254,0.328508624055237,0.519254429183621,0.813472649219715,0.120859449591622,0,0.184161977871793,0,0.910455840033585,0,0,0.0770153371044148,0,0,0.527758144464379,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0.462145851343933,0.15350367472613,0.137836572484531,0.214840489736547,0.290033387828457,0.426133137080504,0.267096106940212,0.165284915360978,0.192190067365106,0.127612712494584,0,0,2.20368642781448,0.6970372701606,0,0,0.869932992075073,0,0.143124886741991,0,0.316379424718726,0,0,0,0.318203247925937,0,0.359744915166629,0,0.589062011728432,0,0,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,1.13008116620243,0.551365343546124,1.32687795048244,0,0,0,0.202910376962704,0,0,0.430234056612155,0.0982490410131212,0,0.354761064070598,0.211107635297664,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,1.13929437434833,0.238231775457789,0,0,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0.333926115068718,0.329607748453519,0,0.796991953004279,0,0,0,0,0.933118762985422,0,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0.227884111694002,0,0,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,1.22429104652196,0.126373159256976,0,0.103688191397247,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.547621515567972,0,0.859530882839914,0,1.11712960508902,0.229160424011684,0.717873024576814,0,0,0,0,0.720599767084807,0,0,0.0824158583811665,0,0,0,0,0.408610218334727,0.321506296930038,0.550157746388935,2.07720169014593,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0.864221491201268,0.326587360109409,0,0,0.340776043570843,0,0,0,0,0.13223260174269,0.171086837884329,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0.895528817321244,0.934853239388898,1.66441758450784,0.189403005275089,0,0,0.228840068396924,0.604923695052956,1.86524640699337,1.77426179987561,1.27437413730962,0,0.776314784381297,3.7323558705677,1.59505028734797,0.521745061811734,1.35231848097497,1.52322084867518,0,1.45478927362048,0.537052785212442,0,2.78667122089031,0.400027764663154,0,0.673498977531838,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,1.28120759293973,0,0,0.138258436151731,0,0,0,0.655219697692825,0,0,0,0,0,0,0.368211900503681,0,0,0,0,0,0.327628914576042,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,0,0,0,0,0,0,1.09394961803644,0,0,0,0,0,0,0,0,0.177404740325278,0,0.857440047187092,0,0,0,0,0.078493092850514,0,0,0,0.647782773655864,0.47775168788705,0,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0,0,0.955538938977433,3.91494011292273,0,0.243835849964539,0,0.102662806856247,0,0.971421986118279,0,0,0,0,0,0,0,1.09279780251979,0,0,0,0,0.594092800654172,0,0.849635573439084,0.0939839179798536,0,0,0,0,0,0,0,0.143339583151451,0.157771562193185,0,0,0,2.23197010900051,2.31087814315709,1.29787968637137,0.126166424835079,0.109265571963696,0.126698501011437,0.101988829741982,0.26721740526556,0.0918948995348449,0.50141507858475,0.0757786982182394,0.535928260312357,0,0.20686599172379,0,0.23806443146374,0,0,0.560659312903067,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0.988077223172456,0,0,0.406896178315738,0,0,0 | |||
|short_description=p@chr5:82835043..82835057,+ | |||
}} |
Revision as of 06:18, 22 January 2014
Short description: | p@chr5:82835043..82835057, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:82835043..82835057, + |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.64e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.64e-29 | 42 |
defensive cell | 8.42e-25 | 48 |
phagocyte | 8.42e-25 | 48 |
monopoietic cell | 1.04e-18 | 59 |
monocyte | 1.04e-18 | 59 |
monoblast | 1.04e-18 | 59 |
promonocyte | 1.04e-18 | 59 |
macrophage dendritic cell progenitor | 6.29e-18 | 61 |
myeloid lineage restricted progenitor cell | 3.54e-16 | 66 |
granulocyte monocyte progenitor cell | 7.37e-16 | 67 |
myeloid leukocyte | 2.12e-14 | 72 |
fibroblast of tunica adventitia of artery | 2.46e-12 | 4 |
fibroblast of the aortic adventitia | 2.46e-12 | 4 |
fibrocyte | 1.59e-10 | 3 |
tendon cell | 1.59e-10 | 3 |
multi fate stem cell | 3.46e-10 | 427 |
somatic stem cell | 7.13e-10 | 433 |
stem cell | 1.81e-09 | 441 |
mesenchymal cell | 2.22e-09 | 354 |
connective tissue cell | 5.50e-09 | 361 |
nongranular leukocyte | 4.98e-08 | 115 |
myeloid cell | 6.11e-08 | 108 |
common myeloid progenitor | 6.11e-08 | 108 |
motile cell | 1.32e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.26e-13 | 76 |
artery wall | 2.46e-12 | 4 |
tunica adventitia of artery | 2.46e-12 | 4 |
adventitia | 2.46e-12 | 4 |
tunica adventitia of blood vessel | 2.46e-12 | 4 |
aorta tunica adventitia | 2.46e-12 | 4 |
aorta wall | 2.46e-12 | 4 |
bone element | 5.08e-12 | 82 |
hematopoietic system | 2.04e-11 | 98 |
blood island | 2.04e-11 | 98 |
lateral plate mesoderm | 4.26e-11 | 203 |
dense regular connective tissue | 1.59e-10 | 3 |
tendon | 1.59e-10 | 3 |
regular connective tissue | 1.59e-10 | 3 |
blood vessel layer | 1.64e-10 | 7 |
skeletal element | 1.67e-10 | 90 |
immune system | 5.26e-10 | 93 |
hemolymphoid system | 7.49e-10 | 108 |
connective tissue | 3.86e-09 | 371 |
skeletal system | 5.83e-09 | 100 |
mesoderm | 6.90e-09 | 315 |
mesoderm-derived structure | 6.90e-09 | 315 |
presumptive mesoderm | 6.90e-09 | 315 |
musculoskeletal system | 8.06e-09 | 167 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.32e-13 | 14 |