FF:18-22I9
From FANTOM5_SSTAR
Name: | olfactory brain, adult |
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Species: | Mouse (Mus musculus) |
Library ID: | {{{library_id}}} |
Sample type: | {{{sample_category}}} |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Download raw sequence, BAM & CTSS | ||||||||||||
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Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10489
0 | 0 |
1 | 0.707 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | 0.0664 |
1002 | -0.0841 |
1003 | 0.128 |
1004 | 0 |
1005 | 0.0504 |
1006 | 0.665 |
1007 | 0.135 |
1008 | 0 |
1009 | -0.0442 |
101 | -0.0689 |
1010 | 0 |
1011 | 0.591 |
1012 | 0.467 |
1013 | 0.173 |
1014 | 0.0337 |
1015 | 0.0388 |
1016 | -0.00757 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.169 |
1023 | 0 |
1024 | 0 |
1025 | 0 |
1026 | 0 |
1027 | 0.679 |
1028 | 0 |
1029 | 0.11 |
103 | -0.0812 |
1030 | 0 |
1031 | -0.321 |
1032 | 0.154 |
1033 | 0.0458 |
1034 | 0 |
1035 | 0 |
1036 | -0.0428 |
1037 | 0 |
1038 | -0.0421 |
1039 | 0.085 |
104 | 0 |
1040 | -0.209 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10489
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10489
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.191 |
10 | 10 | 0.0573 |
100 | 100 | 0.398 |
101 | 101 | 0.435 |
102 | 102 | 0.861 |
103 | 103 | 0.028 |
104 | 104 | 0.859 |
105 | 105 | 0.507 |
106 | 106 | 0.0705 |
107 | 107 | 0.244 |
108 | 108 | 0.693 |
109 | 109 | 0.00134 |
11 | 11 | 0.0504 |
110 | 110 | 0.0628 |
111 | 111 | 0.0685 |
112 | 112 | 0.00545 |
113 | 113 | 0.413 |
114 | 114 | 0.381 |
115 | 115 | 0.778 |
116 | 116 | 0.197 |
117 | 117 | 0.00331 |
118 | 118 | 0.329 |
119 | 119 | 0.236 |
12 | 12 | 0.959 |
120 | 120 | 0.969 |
121 | 121 | 0.645 |
122 | 122 | 0.772 |
123 | 123 | 0.0179 |
124 | 124 | 0.0776 |
125 | 125 | 0.388 |
126 | 126 | 0.015 |
127 | 127 | 0.14 |
128 | 128 | 0.0429 |
129 | 129 | 0.59 |
13 | 13 | 1.15965e-7 |
130 | 130 | 0.243 |
131 | 131 | 0.623 |
132 | 132 | 0.673 |
133 | 133 | 0.643 |
134 | 134 | 0.0898 |
135 | 135 | 0.657 |
136 | 136 | 0.0459 |
137 | 137 | 0.618 |
138 | 138 | 0.863 |
139 | 139 | 0.302 |
14 | 14 | 0.96 |
140 | 140 | 0.0927 |
141 | 141 | 0.759 |
142 | 142 | 0.669 |
143 | 143 | 0.517 |
144 | 144 | 0.457 |
145 | 145 | 0.00223 |
146 | 146 | 0.32 |
147 | 147 | 0.431 |
148 | 148 | 0.77 |
149 | 149 | 0.404 |
15 | 15 | 0.171 |
150 | 150 | 0.0951 |
151 | 151 | 0.797 |
152 | 152 | 0.0676 |
153 | 153 | 0.776 |
154 | 154 | 0.908 |
155 | 155 | 0.135 |
156 | 156 | 0.178 |
157 | 157 | 0.323 |
158 | 158 | 0.26 |
159 | 159 | 0.599 |
160 | 160 | 0.247 |
161 | 161 | 0.173 |
162 | 162 | 0.442 |
163 | 163 | 0.842 |
164 | 164 | 0.0349 |
165 | 165 | 0.0206 |
166 | 166 | 0.894 |
167 | 167 | 0.704 |
168 | 168 | 0.631 |
169 | 169 | 0.00443 |
17 | 17 | 0.0359 |
18 | 18 | 0.723 |
19 | 19 | 0.081 |
2 | 2 | 0.778 |
20 | 20 | 0.0663 |
21 | 21 | 0.191 |
22 | 22 | 0.136 |
23 | 23 | 0.628 |
24 | 24 | 0.0385 |
25 | 25 | 0.674 |
26 | 26 | 1.1672e-6 |
27 | 27 | 0.631 |
28 | 28 | 0.833 |
29 | 29 | 0.0164 |
3 | 3 | 0.0722 |
30 | 30 | 0.756 |
31 | 31 | 0.988 |
32 | 32 | 0.377 |
33 | 33 | 0.208 |
34 | 34 | 0.665 |
35 | 35 | 0.711 |
36 | 36 | 0.255 |
37 | 37 | 0.0236 |
38 | 38 | 0.334 |
39 | 39 | 0.262 |
4 | 4 | 0.22 |
40 | 40 | 0.0913 |
41 | 41 | 0.468 |
42 | 42 | 0.224 |
43 | 43 | 0.185 |
44 | 44 | 0.159 |
45 | 45 | 0.741 |
46 | 46 | 0.145 |
47 | 47 | 0.304 |
48 | 48 | 0.203 |
49 | 49 | 0.263 |
5 | 5 | 0.228 |
50 | 50 | 0.271 |
51 | 51 | 0.712 |
52 | 52 | 0.307 |
53 | 53 | 0.528 |
54 | 54 | 0.835 |
55 | 55 | 0.854 |
56 | 56 | 0.572 |
57 | 57 | 0.605 |
58 | 58 | 0.317 |
59 | 59 | 0.123 |
6 | 6 | 0.751 |
60 | 60 | 0.049 |
61 | 61 | 0.039 |
62 | 62 | 0.205 |
63 | 63 | 0.152 |
64 | 64 | 0.535 |
65 | 65 | 0.333 |
66 | 66 | 0.734 |
67 | 67 | 0.591 |
68 | 68 | 0.487 |
69 | 69 | 0.429 |
7 | 7 | 0.0158 |
70 | 70 | 0.0741 |
71 | 71 | 0.00522 |
72 | 72 | 0.544 |
73 | 73 | 0.0185 |
74 | 74 | 0.81 |
75 | 75 | 0.0361 |
76 | 76 | 0.496 |
77 | 77 | 0.291 |
78 | 78 | 0.00347 |
79 | 79 | 0.886 |
8 | 8 | 0.0435 |
80 | 80 | 0.889 |
81 | 81 | 0.841 |
82 | 82 | 0.247 |
83 | 83 | 0.0213 |
84 | 84 | 0.646 |
85 | 85 | 0.154 |
86 | 86 | 0.215 |
87 | 87 | 0.0539 |
88 | 88 | 0.488 |
89 | 89 | 0.524 |
9 | 9 | 0.555 |
90 | 90 | 0.095 |
91 | 91 | 0.0972 |
92 | 92 | 0.239 |
93 | 93 | 0.175 |
94 | 94 | 0.788 |
95 | 95 | 0.0106 |
96 | 96 | 0.305 |
97 | 97 | 0.857 |
98 | 98 | 0.661 |
99 | 99 | 0.385 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10489
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000004 tissue sample
FF:0000103 mouse sample
FF:0011286 mouse olfactory brain- adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000033 (head)
0000061 (anatomical structure)
0000073 (regional part of nervous system)
0000153 (anterior region of body)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000475 (organism subdivision)
0000479 (tissue)
0000480 (anatomical group)
0000481 (multi-tissue structure)
0000922 (embryo)
0000923 (germ layer)
0000924 (ectoderm)
0000955 (brain)
0001016 (nervous system)
0001017 (central nervous system)
0001062 (anatomical entity)
0002050 (embryonic structure)
0002532 (epiblast (generic))
0004121 (ectoderm-derived structure)
0005423 (developing anatomical structure)
0007023 (adult organism)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA