User:Serkan

name	motif db	motif id	motif name	score
NonredundantMotifs:1		Lhx8_2247.2
NonredundantMotifs:10		ZEB1.p2
NonredundantMotifs:100		Sp4_secondary
NonredundantMotifs:101		Cphx_3484.1
NonredundantMotifs:102		Tcfap2c_secondary
NonredundantMotifs:103		TLX1_f1
NonredundantMotifs:104		CDX1,2,4.p2
NonredundantMotifs:105		ZBTB6.p2
NonredundantMotifs:106		E2F2_secondary
NonredundantMotifs:108		SPZ1.p2
NonredundantMotifs:109		SPZ1_f1
NonredundantMotifs:11		MA0065.2
NonredundantMotifs:110		Gata6_secondary
NonredundantMotifs:111		PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)
NonredundantMotifs:112		SMAD1_si
NonredundantMotifs:113		Rhox11_2205.1
NonredundantMotifs:114		ZBTB33_GM12878-ZBTB33-ChIP-Seq
NonredundantMotifs:115		MAZ_f1
NonredundantMotifs:116		CDC5L.p2
NonredundantMotifs:117		ZBT7B_si
NonredundantMotifs:118		POU6F1.p2
NonredundantMotifs:119		KLF15_f1
NonredundantMotifs:120		MBD2_si
NonredundantMotifs:121		Gcm1_primary
NonredundantMotifs:122		EWSR1-FLI1.p2
NonredundantMotifs:123		MSX1,2.p2
NonredundantMotifs:124		ARID5B.p2
NonredundantMotifs:125		Osr1_secondary
NonredundantMotifs:126		Osr1_primary
NonredundantMotifs:127		Sp100_primary
NonredundantMotifs:128		ZNF263_K562-Znf263-ChIP-Seq
NonredundantMotifs:129		EN1,2.p2
NonredundantMotifs:13		STAT1_HelaS3-STAT1-ChIP-Seq
NonredundantMotifs:130		SOX17_f2
NonredundantMotifs:131		Isgf3g_secondary
NonredundantMotifs:132		Sox7_secondary
NonredundantMotifs:133		Zbtb12_secondary
NonredundantMotifs:134		FUBP1_f1
NonredundantMotifs:135		DMC1_Testis-DMC1-ChIP-Seq
NonredundantMotifs:136		HMX1.p2
NonredundantMotifs:137		IRF5_f1
NonredundantMotifs:138		EOMES_f1
NonredundantMotifs:139		IRC900814_secondary
NonredundantMotifs:14		CDX2_mES-Cdx2-ChIP-Seq
NonredundantMotifs:140		Zfp187_primary
NonredundantMotifs:141		HXD10_f1
NonredundantMotifs:142		POU3F1..4.p2
NonredundantMotifs:143		EBNA1_Raji-EBNA1-ChIP-Seq(GSE30709)
NonredundantMotifs:144		Sox15_secondary
NonredundantMotifs:145		Arid5a_secondary
... further results

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JASPAR_ID	Name
MA0002.2	RUNX1 Runx1
MA0003.1	TFAP2A Tfap2a
MA0004.1	Arnt ARNT
MA0006.1	Arnt ARNT Ahr AHR
MA0007.1	Ar AR
MA0009.1	T
MA0014.1	Pax5 PAX5
MA0017.1	NR2F1 Nr2f1
MA0018.2	CREB1 Creb1
MA0019.1	Ddit3 DDIT3 Cebpa CEBPA
MA0024.1	E2F1 E2f1
MA0025.1	NFIL3 Nfil3
MA0027.1	En1 EN1
MA0028.1	ELK1 Elk1
MA0029.1	Evi1
MA0030.1	FOXF2 Foxf2
MA0031.1	FOXD1 Foxd1
MA0035.2	Gata1 GATA1
MA0038.1	Gfi
MA0039.2	Klf4 KLF4
MA0040.1	Foxq1 FOXQ1
MA0041.1	Foxd3 FOXD3
MA0042.1	FOXI1 Foxi1
MA0043.1	HLF Hlf
MA0046.1	HNF1A Hnf1a
MA0047.2	Foxa2 FOXA2
MA0048.1	NHLH1 Nhlh1
MA0050.1	IRF1 Irf1
MA0051.1	IRF2 Irf2
MA0052.1	MEF2A Mef2a
MA0055.1	Myf
MA0057.1	MZF1_5-13
MA0058.1	MAX Max
MA0059.1	Myc MYC Max MAX
MA0060.1	NFYA Nfya
MA0061.1	NF-kappaB
MA0062.2	GABPA Gabpa
MA0065.2	PPARG Pparg RXRA Rxra
MA0066.1	PPARG Pparg
MA0067.1	Pax2 PAX2
MA0068.1	Pax4 PAX4
MA0069.1	Pax6 PAX6
MA0070.1	PBX1 Pbx1
MA0071.1	RORA_1
MA0072.1	RORA_2
MA0073.1	RREB1 Rreb1
MA0074.1	RXRA Rxra VDR Vdr
MA0076.1	ELK4 Elk4
MA0077.1	SOX9 Sox9
MA0078.1	Sox17 SOX17
MA0079.2	SP1 Sp1
MA0080.2	SPI1
MA0081.1	SPIB Spib
MA0083.1	SRF Srf
MA0084.1	SRY
MA0087.1	Sox5 SOX5
MA0088.1	znf143 ZNF143
MA0090.1	TEAD1 Tead1
MA0091.1	TAL1 Tal1 TCF3 Tcf3
MA0092.1	Hand1 HAND1 Tcfe2a TCFE2A
MA0093.1	USF1 Usf1
MA0099.2	AP1
MA0100.1	Myb MYB
MA0101.1	REL Rel
MA0102.2	CEBPA Cebpa
MA0103.1	ZEB1 Zeb1
MA0104.2	Mycn MYCN
MA0105.1	NFKB1 Nfkb1
MA0106.1	TP53
MA0107.1	RELA Rela
MA0108.2	TBP Tbp
MA0111.1	Spz1 SPZ1
MA0112.2	ESR1 Esr1
MA0113.1	NR3C1 Nr3c1
MA0114.1	HNF4A Hnf4a
MA0115.1	NR1H2 Nr1h2 RXRA Rxra
MA0116.1	Zfp423
MA0117.1	Mafb MAFB
MA0119.1	TLX1 Tlx1 NFIC Nfic
MA0122.1	Nkx3-2 NKX3-2
MA0124.1	NKX3-1 Nkx3-1
MA0125.1	Nobox
MA0131.1	MIZF
MA0135.1	Lhx3 LHX3
MA0136.1	ELF5 Elf5
MA0137.2	STAT1 Stat1
MA0138.2	REST Rest
MA0139.1	CTCF Ctcf
MA0140.1	Tal1 TAL1 Gata1 GATA1
MA0141.1	Esrrb ESRRB
MA0142.1	Pou5f1 POU5F1
MA0143.1	Sox2 SOX2
MA0144.1	Stat3 STAT3
MA0145.1	Tcfcp2l1
MA0146.1	Zfx ZFX
MA0147.1	Myc MYC
MA0148.1	FOXA1 Foxa1
MA0149.1	EWSR1-FLI1
MA0150.1	NFE2L2 Nfe2l2
MA0152.1	NFATC2 Nfatc2
MA0153.1	HNF1B Hnf1b
MA0154.1	EBF1 Ebf1
MA0155.1	INSM1 Insm1
MA0156.1	FEV
MA0157.1	FOXO3 Foxo3
MA0159.1	RXR RAR_DR5
MA0160.1	NR4A2 Nr4a2
MA0162.1	Egr1 EGR1
MA0163.1	PLAG1 Plag1
MA0164.1	Nr2e3 NR2E3
MA0258.1	ESR2 Esr2
MA0259.1	HIF1A Hif1a ARNT Arnt

FF ontology id	Name	Sample category	Datafreeze phase
10000-101A1	Clontech Human Universal Reference Total RNA, pool1	tissues	2
10001-101A3	Clontech Mouse Universal Reference Total RNA, pool1	tissues	2
10002-101A5	SABiosciences XpressRef Human Universal Total RNA, pool1	tissues	2
10003-101A7	SABiosciences XpressRef Mouse Universal Total RNA, pool1	tissues	2
10004-101A9	chicken embryo whole body, day10 (HH37)	tissues	-1
10005-101B1	{{{name}}}	{{{sample_category}}}	-1
10006-101B2	Universal RNA - Dog Normal Tissues Biochain, pool1	tissues	-1
10007-101B4	Universal RNA - Human Normal Tissues Biochain, pool1	tissues	2
10008-101B6	Universal RNA - Mouse Normal Tissues Biochain, pool1	tissues	2
10009-101B8	Universal RNA - Rat Normal Tissues Biochain, pool1	tissues	-1
10010-101C1	adipose tissue, adult, pool1	tissues	2
10011-101C2	bladder, adult, pool1	tissues	2
10012-101C3	brain, adult, pool1	tissues	2
10013-101C4	cervix, adult, pool1	tissues	2
10014-101C5	colon, adult, pool1	tissues	2
10015-101C6	esophagus, adult, pool1	tissues	2
10016-101C7	heart, adult, pool1	tissues	2
10017-101C8	kidney, adult, pool1	tissues	2
10018-101C9	liver, adult, pool1	tissues	2
10019-101D1	lung, adult, pool1	tissues	2

FF ontology id	Name	Sample category	Datafreeze phase
10000-101A1	Clontech Human Universal Reference Total RNA, pool1	tissues	2
10001-101A3	Clontech Mouse Universal Reference Total RNA, pool1	tissues	2
10002-101A5	SABiosciences XpressRef Human Universal Total RNA, pool1	tissues	2
10003-101A7	SABiosciences XpressRef Mouse Universal Total RNA, pool1	tissues	2
10004-101A9	chicken embryo whole body, day10 (HH37)	tissues	-1
10005-101B1	{{{name}}}	{{{sample_category}}}	-1
10006-101B2	Universal RNA - Dog Normal Tissues Biochain, pool1	tissues	-1
10007-101B4	Universal RNA - Human Normal Tissues Biochain, pool1	tissues	2
10008-101B6	Universal RNA - Mouse Normal Tissues Biochain, pool1	tissues	2
10009-101B8	Universal RNA - Rat Normal Tissues Biochain, pool1	tissues	-1
10010-101C1	adipose tissue, adult, pool1	tissues	2
10011-101C2	bladder, adult, pool1	tissues	2
10012-101C3	brain, adult, pool1	tissues	2
10013-101C4	cervix, adult, pool1	tissues	2
10014-101C5	colon, adult, pool1	tissues	2
10015-101C6	esophagus, adult, pool1	tissues	2
10016-101C7	heart, adult, pool1	tissues	2
10017-101C8	kidney, adult, pool1	tissues	2
10018-101C9	liver, adult, pool1	tissues	2
10019-101D1	lung, adult, pool1	tissues	2

FF ontology id	Name	Sample category	Datafreeze phase
10000-101A1	Clontech Human Universal Reference Total RNA, pool1	tissues	2
10001-101A3	Clontech Mouse Universal Reference Total RNA, pool1	tissues	2
10002-101A5	SABiosciences XpressRef Human Universal Total RNA, pool1	tissues	2
10003-101A7	SABiosciences XpressRef Mouse Universal Total RNA, pool1	tissues	2
10004-101A9	chicken embryo whole body, day10 (HH37)	tissues	-1
10005-101B1	{{{name}}}	{{{sample_category}}}	-1
10006-101B2	Universal RNA - Dog Normal Tissues Biochain, pool1	tissues	-1
10007-101B4	Universal RNA - Human Normal Tissues Biochain, pool1	tissues	2
10008-101B6	Universal RNA - Mouse Normal Tissues Biochain, pool1	tissues	2
10009-101B8	Universal RNA - Rat Normal Tissues Biochain, pool1	tissues	-1
10010-101C1	adipose tissue, adult, pool1	tissues	2
10011-101C2	bladder, adult, pool1	tissues	2
10012-101C3	brain, adult, pool1	tissues	2
10013-101C4	cervix, adult, pool1	tissues	2
10014-101C5	colon, adult, pool1	tissues	2
10015-101C6	esophagus, adult, pool1	tissues	2
10016-101C7	heart, adult, pool1	tissues	2
10017-101C8	kidney, adult, pool1	tissues	2
10018-101C9	liver, adult, pool1	tissues	2
10019-101D1	lung, adult, pool1	tissues	2