MCL coexpression mm9:649
From FANTOM5_SSTAR
Phase1 CAGE Peaks
| Short description | |
|---|---|
| Mm9::chr11:17805943..17805945,+ | p@chr11:17805943..17805945 + |
| Mm9::chr13:117839387..117839413,+ | p@chr13:117839387..117839413 + |
| Mm9::chr13:21826924..21826939,+ | p8@Hist1h4c p8@Hist1h4d p8@Hist1h4f p8@Hist1h4h p8@Hist1h4i p8@Hist1h4j p8@Hist1h4k p8@Hist1h4m p8@Hist1h4n p9@Hist1h4a p9@Hist1h4b p9@Hist2h4 p9@Hist4h4 |
| Mm9::chr13:21902297..21902311,+ | p7@Hist1h2ap |
| Mm9::chr13:21903606..21903623,+ | p6@Hist1h4c p6@Hist1h4d p6@Hist1h4f p6@Hist1h4h p6@Hist1h4i p6@Hist1h4j p6@Hist1h4k p6@Hist1h4m p6@Hist1h4n p7@Hist1h4a p7@Hist1h4b p7@Hist2h4 p7@Hist4h4 |
| Mm9::chr13:21925605..21925620,+ | p1@Hist1h2bq p1@Hist1h2br p5@Hist1h2bf p5@Hist1h2bj p5@Hist1h2bl p5@Hist1h2bn |
| Mm9::chr17:17026218..17026227,+ | p@chr17:17026218..17026227 + |
| Mm9::chr1:129690056..129690058,+ | p@chr1:129690056..129690058 + |
| Mm9::chr3:96049453..96049469,+ | p1@Hist2h2aa1 p1@Hist2h2aa2 |
| Mm9::chr3:96050759..96050773,+ | p4@Hist2h3c1 |
| Mm9::chr5:74733727..74733734,+ | p@chr5:74733727..74733734 + |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
| GO ID | GO name | FDR corrected p-value |
|---|---|---|
| GO:0006334 | nucleosome assembly | 1.36092384170213e-08 |
| GO:0000786 | nucleosome | 1.36092384170213e-08 |
| GO:0031497 | chromatin assembly | 1.36092384170213e-08 |
| GO:0065004 | protein-DNA complex assembly | 1.68781729974058e-08 |
| GO:0006333 | chromatin assembly or disassembly | 1.92589973053561e-08 |
| GO:0000785 | chromatin | 7.6750922537972e-08 |
| GO:0006325 | establishment and/or maintenance of chromatin architecture | 2.39504771253207e-07 |
| GO:0006323 | DNA packaging | 2.39504771253207e-07 |
| GO:0044427 | chromosomal part | 3.02073060572191e-07 |
| GO:0065003 | macromolecular complex assembly | 3.30771804293327e-07 |
| GO:0005694 | chromosome | 4.86122415955161e-07 |
| GO:0022607 | cellular component assembly | 5.29295570108079e-07 |
| GO:0051276 | chromosome organization and biogenesis | 5.29295570108079e-07 |
| GO:0006259 | DNA metabolic process | 3.3315282502706e-06 |
| GO:0006996 | organelle organization and biogenesis | 3.31219047587105e-05 |
| GO:0043232 | intracellular non-membrane-bound organelle | 9.19041659126887e-05 |
| GO:0043228 | non-membrane-bound organelle | 9.19041659126887e-05 |
| GO:0043234 | protein complex | 0.000111663926635138 |
| GO:0003677 | DNA binding | 0.000208617178318726 |
| GO:0032991 | macromolecular complex | 0.000253461686821122 |
| GO:0044446 | intracellular organelle part | 0.000425046946605353 |
| GO:0044422 | organelle part | 0.000425046946605353 |
| GO:0016043 | cellular component organization and biogenesis | 0.000425046946605353 |
| GO:0003676 | nucleic acid binding | 0.00077584897085914 |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.00100471602029284 |
| GO:0005634 | nucleus | 0.00314665442940148 |
| GO:0043283 | biopolymer metabolic process | 0.00342409833126973 |
| GO:0043170 | macromolecule metabolic process | 0.00983723022032124 |
| GO:0044238 | primary metabolic process | 0.01592009323515 |
| GO:0044237 | cellular metabolic process | 0.01592009323515 |
| GO:0043231 | intracellular membrane-bound organelle | 0.01592009323515 |
| GO:0043227 | membrane-bound organelle | 0.01592009323515 |
| GO:0043229 | intracellular organelle | 0.0246068068402387 |
| GO:0043226 | organelle | 0.0246068068402387 |
| GO:0044424 | intracellular part | 0.0490728166954524 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic cell | 2.49e-14 | 32 |
| hematopoietic oligopotent progenitor cell | 2.49e-14 | 32 |
| hematopoietic stem cell | 2.49e-14 | 32 |
| angioblastic mesenchymal cell | 2.49e-14 | 32 |
| hematopoietic multipotent progenitor cell | 2.49e-14 | 32 |
| hematopoietic lineage restricted progenitor cell | 4.21e-11 | 25 |
| connective tissue cell | 1.95e-10 | 46 |
| mesenchymal cell | 1.95e-10 | 46 |
| common myeloid progenitor | 3.03e-10 | 19 |
| somatic cell | 3.35e-10 | 118 |
| motile cell | 2.80e-09 | 54 |
| endo-epithelial cell | 3.62e-09 | 15 |
| animal cell | 7.39e-09 | 115 |
| eukaryotic cell | 7.39e-09 | 115 |
| myeloid cell | 3.30e-08 | 16 |
| epithelial cell | 1.52e-07 | 25 |
| nucleate cell | 3.50e-07 | 16 |
| megakaryocyte-erythroid progenitor cell | 5.07e-07 | 9 |
| Ontology term | p-value | n |
|---|---|---|
| hemolymphoid system | 1.34e-12 | 48 |
| immune system | 1.34e-12 | 48 |
| hematopoietic system | 9.70e-12 | 45 |
| blood island | 9.70e-12 | 45 |
| connective tissue | 1.95e-10 | 46 |
| gut epithelium | 2.41e-08 | 55 |
| segment of respiratory tract | 4.84e-08 | 27 |
| hemopoietic organ | 1.12e-07 | 29 |
| immune organ | 1.12e-07 | 29 |
| unilaminar epithelium | 1.85e-07 | 66 |
| mucosa | 3.01e-07 | 15 |
| thymus | 4.76e-07 | 23 |
| neck | 4.76e-07 | 23 |
| respiratory system epithelium | 4.76e-07 | 23 |
| hemolymphoid system gland | 4.76e-07 | 23 |
| pharyngeal epithelium | 4.76e-07 | 23 |
| thymic region | 4.76e-07 | 23 |
| pharyngeal gland | 4.76e-07 | 23 |
| entire pharyngeal arch endoderm | 4.76e-07 | 23 |
| thymus primordium | 4.76e-07 | 23 |
| early pharyngeal endoderm | 4.76e-07 | 23 |
| gland of gut | 9.98e-07 | 24 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
| MA0003.1 | 0.0832519 |
| MA0004.1 | 0.330313 |
| MA0006.1 | 0.547312 |
| MA0007.1 | 0.316976 |
| MA0009.1 | 0.743257 |
| MA0014.1 | 0.144697 |
| MA0017.1 | 0.207884 |
| MA0019.1 | 0.567591 |
| MA0024.1 | 0.70077 |
| MA0025.1 | 0.971686 |
| MA0027.1 | 2.37948 |
| MA0028.1 | 0.194782 |
| MA0029.1 | 0.679737 |
| MA0030.1 | 0.686088 |
| MA0031.1 | 0.651724 |
| MA0038.1 | 0.462726 |
| MA0040.1 | 0.755433 |
| MA0041.1 | 0.263922 |
| MA0042.1 | 0.252679 |
| MA0043.1 | 0.837621 |
| MA0046.1 | 0.778239 |
| MA0048.1 | 0.054097 |
| MA0050.1 | 0.365212 |
| MA0051.1 | 0.471092 |
| MA0052.1 | 0.76328 |
| MA0055.1 | 0.0494654 |
| MA0056.1 | 0 |
| MA0057.1 | 0.181039 |
| MA0058.1 | 0.246908 |
| MA0059.1 | 0.257372 |
| MA0060.1 | 4.00777 |
| MA0061.1 | 0.147394 |
| MA0063.1 | 0 |
| MA0066.1 | 0.452472 |
| MA0067.1 | 1.08124 |
| MA0068.1 | 0.0500842 |
| MA0069.1 | 0.76361 |
| MA0070.1 | 0.75417 |
| MA0071.1 | 0.364454 |
| MA0072.1 | 0.745922 |
| MA0073.1 | 0.106885 |
| MA0074.1 | 0.419185 |
| MA0076.1 | 0.635923 |
| MA0077.1 | 0.724865 |
| MA0078.1 | 0.502121 |
| MA0081.1 | 0.277253 |
| MA0083.1 | 0.836845 |
| MA0084.1 | 1.4063 |
| MA0087.1 | 0.794721 |
| MA0088.1 | 0.12124 |
| MA0089.1 | 0 |
| MA0090.1 | 0.299987 |
| MA0091.1 | 0.342071 |
| MA0092.1 | 1.47462 |
| MA0093.1 | 0.20148 |
| MA0095.1 | 0 |
| MA0098.1 | 0 |
| MA0100.1 | 0.408523 |
| MA0101.1 | 0.265031 |
| MA0103.1 | 0.216742 |
| MA0105.1 | 0.0759118 |
| MA0106.1 | 0.509454 |
| MA0107.1 | 0.211681 |
| MA0108.2 | 2.45353 |
| MA0109.1 | 0 |
| MA0111.1 | 0.312463 |
| MA0113.1 | 1.21288 |
| MA0114.1 | 0.145642 |
| MA0115.1 | 0.84036 |
| MA0116.1 | 0.186271 |
| MA0117.1 | 0.808813 |
| MA0119.1 | 0.265536 |
| MA0122.1 | 0.828211 |
| MA0124.1 | 1.02871 |
| MA0125.1 | 0.955734 |
| MA0130.1 | 0 |
| MA0131.1 | 0.563262 |
| MA0132.1 | 0 |
| MA0133.1 | 0 |
| MA0135.1 | 0.873285 |
| MA0136.1 | 0.437601 |
| MA0139.1 | 0.103495 |
| MA0140.1 | 1.05203 |
| MA0141.1 | 0.233109 |
| MA0142.1 | 0.63775 |
| MA0143.1 | 0.49828 |
| MA0144.1 | 0.147954 |
| MA0145.1 | 0.3137 |
| MA0146.1 | 0.0833862 |
| MA0147.1 | 0.157258 |
| MA0148.1 | 0.344843 |
| MA0149.1 | 0.269772 |
| MA0062.2 | 0.271822 |
| MA0035.2 | 1.06146 |
| MA0039.2 | 0.0799333 |
| MA0138.2 | 0.555696 |
| MA0002.2 | 0.105469 |
| MA0137.2 | 0.230686 |
| MA0104.2 | 0.11535 |
| MA0047.2 | 0.46201 |
| MA0112.2 | 0.0329566 |
| MA0065.2 | 0.033123 |
| MA0150.1 | 0.316876 |
| MA0151.1 | 0 |
| MA0152.1 | 0.46211 |
| MA0153.1 | 0.889592 |
| MA0154.1 | 0.0529077 |
| MA0155.1 | 0.154271 |
| MA0156.1 | 0.222905 |
| MA0157.1 | 0.606944 |
| MA0158.1 | 0 |
| MA0159.1 | 0.165031 |
| MA0160.1 | 0.347545 |
| MA0161.1 | 0 |
| MA0162.1 | 0.219632 |
| MA0163.1 | 0.198448 |
| MA0164.1 | 0.437937 |
| MA0080.2 | 0.212408 |
| MA0018.2 | 0.446948 |
| MA0099.2 | 0.549696 |
| MA0079.2 | 0.0743239 |
| MA0102.2 | 1.45844 |
| MA0258.1 | 0.135621 |
| MA0259.1 | 0.455671 |
| MA0442.1 | 0 |
