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(Created page with "{{f5samples |id=FF:11571-120E5 |name=Pericytes, donor2 |sample_id=11571 |rna_tube_id=120E5 |rna_box=120 |rna_position=E5 |sample_cell_lot=lot:3420 |sample_cell_catalog...")
 
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{{f5samples
{{f5samples
|id=FF:11571-120E5
|DRA_sample_Accession=CAGE@SAMD00005839
|name=Pericytes, donor2
|accession_numbers=CAGE;DRX008397;DRR009269;DRZ000694;DRZ002079;DRZ012044;DRZ013429
|sample_id=11571
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=120E5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0002575
|rna_box=120
|rna_position=E5
|sample_cell_lot=lot:3420
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC1205
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=brain
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.70000
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=pericyte
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.50000
|sample_note=
|profile_hcage=CNhs12079,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000144,CL:0000183,CL:0000255,CL:0000548,CL:0000630,CL:0000669,CL:0002320,CL:0002371,CL:0002575
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000133
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000669
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Pericytes%252c%2520donor2.CNhs12079.11571-120E5.hg38.nobarcode.ctss.bed.gz
|id=FF:11571-120E5
|is_a=EFO:0002091;;FF:0000133
|is_obsolete=
|library_id=CNhs12079
|library_id_phase_based=2:CNhs12079
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11571
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11571
|name=Pericytes, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12079,LSID838,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_catalog_number=SC1205
|rna_concentration=1.5
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=E5
|rna_rin=9.7
|rna_sample_type=total RNA
|rna_tube_id=1.20E+07
|rna_weight_ug=10
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=lot:3420
|sample_cell_type=pericyte
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.70516387155769e-222!GO:0005737;cytoplasm;1.78238753038794e-169!GO:0043226;organelle;5.05606819487825e-154!GO:0043229;intracellular organelle;7.47304510023421e-154!GO:0043231;intracellular membrane-bound organelle;3.91134357415309e-146!GO:0043227;membrane-bound organelle;8.94253490288032e-146!GO:0044444;cytoplasmic part;9.77297336587548e-128!GO:0044422;organelle part;1.16587922739634e-106!GO:0044446;intracellular organelle part;1.27861146879832e-105!GO:0032991;macromolecular complex;5.00729138259962e-73!GO:0005515;protein binding;5.26782637179683e-65!GO:0030529;ribonucleoprotein complex;7.49684041653386e-63!GO:0005739;mitochondrion;1.63621079387555e-62!GO:0044238;primary metabolic process;2.41614049075509e-60!GO:0044237;cellular metabolic process;4.77860991895413e-60!GO:0043170;macromolecule metabolic process;6.37396208485946e-53!GO:0043233;organelle lumen;1.09987498453579e-51!GO:0031974;membrane-enclosed lumen;1.09987498453579e-51!GO:0005634;nucleus;2.23877426377089e-46!GO:0031090;organelle membrane;1.06454193538347e-45!GO:0005840;ribosome;2.62144370786813e-45!GO:0003723;RNA binding;3.3034868217798e-43!GO:0044429;mitochondrial part;1.29881752210273e-42!GO:0044428;nuclear part;6.10412254946849e-42!GO:0003735;structural constituent of ribosome;3.93719285617513e-41!GO:0043234;protein complex;1.45895853418716e-37!GO:0033279;ribosomal subunit;7.64378969910806e-36!GO:0016043;cellular component organization and biogenesis;1.80085655882315e-35!GO:0019538;protein metabolic process;1.01659387153468e-34!GO:0006412;translation;1.24839734329312e-34!GO:0031967;organelle envelope;3.02355899387645e-34!GO:0031975;envelope;5.37298207159032e-34!GO:0009058;biosynthetic process;6.40214945400904e-34!GO:0044260;cellular macromolecule metabolic process;9.02009738887065e-31!GO:0044249;cellular biosynthetic process;1.06510880298011e-30!GO:0005740;mitochondrial envelope;1.66970556895838e-30!GO:0044267;cellular protein metabolic process;5.5419772746513e-30!GO:0009059;macromolecule biosynthetic process;4.25608716803391e-29!GO:0015031;protein transport;4.42597461195252e-29!GO:0033036;macromolecule localization;4.79182299835351e-29!GO:0031966;mitochondrial membrane;5.20002186524114e-29!GO:0005829;cytosol;6.12055454490327e-29!GO:0010467;gene expression;9.09800624676131e-29!GO:0019866;organelle inner membrane;2.52585118954062e-28!GO:0006396;RNA processing;1.12299164136577e-27!GO:0008104;protein localization;1.85778198538424e-27!GO:0031981;nuclear lumen;2.18689254628155e-27!GO:0005743;mitochondrial inner membrane;2.31971187437682e-27!GO:0045184;establishment of protein localization;3.66812923081512e-27!GO:0043283;biopolymer metabolic process;3.86477075484289e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.58001758155567e-26!GO:0046907;intracellular transport;2.46051390114361e-24!GO:0016071;mRNA metabolic process;8.03579308224668e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.33566397294508e-22!GO:0006996;organelle organization and biogenesis;1.39035028669275e-22!GO:0043228;non-membrane-bound organelle;2.26276930951975e-21!GO:0043232;intracellular non-membrane-bound organelle;2.26276930951975e-21!GO:0008380;RNA splicing;6.35425695682219e-21!GO:0044445;cytosolic part;2.29548285387614e-20!GO:0005783;endoplasmic reticulum;3.01003963383122e-20!GO:0044455;mitochondrial membrane part;3.2164511042779e-20!GO:0006119;oxidative phosphorylation;4.12660625108429e-20!GO:0006886;intracellular protein transport;8.93920323579412e-20!GO:0006397;mRNA processing;1.00751044310376e-19!GO:0065003;macromolecular complex assembly;1.76745796973818e-19!GO:0015934;large ribosomal subunit;2.34361513081418e-19!GO:0022607;cellular component assembly;8.6510114489428e-19!GO:0005654;nucleoplasm;5.01288779570591e-18!GO:0044432;endoplasmic reticulum part;1.09260011626329e-17!GO:0015935;small ribosomal subunit;1.47281998319776e-17!GO:0005746;mitochondrial respiratory chain;1.86880039938343e-17!GO:0008134;transcription factor binding;3.55717215908393e-17!GO:0044451;nucleoplasm part;1.52033794981958e-16!GO:0048770;pigment granule;1.3085822761965e-15!GO:0042470;melanosome;1.3085822761965e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.3085822761965e-15!GO:0003954;NADH dehydrogenase activity;1.3085822761965e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.3085822761965e-15!GO:0012505;endomembrane system;1.54745124060203e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.61481829015596e-15!GO:0006457;protein folding;4.83530206670232e-15!GO:0005681;spliceosome;7.60848871498106e-15!GO:0031980;mitochondrial lumen;1.68809891500969e-14!GO:0005759;mitochondrial matrix;1.68809891500969e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.79250336940218e-14!GO:0051186;cofactor metabolic process;2.9114114079026e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.80467622476053e-14!GO:0051649;establishment of cellular localization;6.25651666706558e-14!GO:0051641;cellular localization;6.90338879277623e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.05866392939483e-13!GO:0042773;ATP synthesis coupled electron transport;1.05866392939483e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.40064773638301e-13!GO:0045271;respiratory chain complex I;1.40064773638301e-13!GO:0005747;mitochondrial respiratory chain complex I;1.40064773638301e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.99812017343594e-13!GO:0005794;Golgi apparatus;9.49899020738637e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.72016809982968e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.79970352322317e-12!GO:0006512;ubiquitin cycle;2.39902563794196e-12!GO:0003676;nucleic acid binding;2.89740280918472e-12!GO:0016874;ligase activity;7.80310143697741e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.0111895280675e-11!GO:0005761;mitochondrial ribosome;1.23791927305357e-11!GO:0000313;organellar ribosome;1.23791927305357e-11!GO:0005789;endoplasmic reticulum membrane;1.26608036587581e-11!GO:0016070;RNA metabolic process;1.26762439927175e-11!GO:0003712;transcription cofactor activity;3.67700802605574e-11!GO:0006259;DNA metabolic process;3.92757152429202e-11!GO:0044265;cellular macromolecule catabolic process;7.73433710448123e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.6259096176468e-10!GO:0006605;protein targeting;1.710798876582e-10!GO:0006732;coenzyme metabolic process;1.74211775500078e-10!GO:0043285;biopolymer catabolic process;3.19422304065547e-10!GO:0051082;unfolded protein binding;4.87250932951037e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;4.9545975917593e-10!GO:0005793;ER-Golgi intermediate compartment;6.89011370215194e-10!GO:0019941;modification-dependent protein catabolic process;7.48129561677378e-10!GO:0043632;modification-dependent macromolecule catabolic process;7.48129561677378e-10!GO:0044257;cellular protein catabolic process;8.04599814895487e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.48140600847431e-10!GO:0016462;pyrophosphatase activity;8.63011594748522e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;8.90617158663988e-10!GO:0009057;macromolecule catabolic process;9.84379543489314e-10!GO:0048193;Golgi vesicle transport;1.20661747298773e-09!GO:0006511;ubiquitin-dependent protein catabolic process;1.42469892784473e-09!GO:0017111;nucleoside-triphosphatase activity;1.42829038557542e-09!GO:0043412;biopolymer modification;1.74883951251533e-09!GO:0005730;nucleolus;2.64404334634868e-09!GO:0016192;vesicle-mediated transport;3.46616096867265e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.55283513554311e-09!GO:0000375;RNA splicing, via transesterification reactions;3.55283513554311e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.55283513554311e-09!GO:0030163;protein catabolic process;3.66807368140335e-09!GO:0006366;transcription from RNA polymerase II promoter;3.67855067866366e-09!GO:0022618;protein-RNA complex assembly;4.51387364960478e-09!GO:0005788;endoplasmic reticulum lumen;5.71295148738173e-09!GO:0000166;nucleotide binding;5.94325259035875e-09!GO:0044248;cellular catabolic process;9.80124534121953e-09!GO:0006464;protein modification process;1.14354164650924e-08!GO:0012501;programmed cell death;1.23897731573093e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.68251158550906e-08!GO:0048523;negative regulation of cellular process;1.91883447805105e-08!GO:0006915;apoptosis;2.50952859649802e-08!GO:0008135;translation factor activity, nucleic acid binding;2.89041607369033e-08!GO:0009055;electron carrier activity;3.0576131640526e-08!GO:0009150;purine ribonucleotide metabolic process;7.38353863720682e-08!GO:0006323;DNA packaging;7.58402138119209e-08!GO:0015078;hydrogen ion transmembrane transporter activity;7.6094749625827e-08!GO:0006163;purine nucleotide metabolic process;1.32047537072729e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.39976447807519e-07!GO:0008219;cell death;1.72533718713451e-07!GO:0016265;death;1.72533718713451e-07!GO:0051188;cofactor biosynthetic process;2.18662826813561e-07!GO:0007049;cell cycle;3.69608441407925e-07!GO:0009259;ribonucleotide metabolic process;4.0894810784452e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.27148285502901e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.6614716401612e-07!GO:0043687;post-translational protein modification;4.75997304001522e-07!GO:0050794;regulation of cellular process;5.07234180771046e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.34048283864477e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.34048283864477e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.82357927105322e-07!GO:0048519;negative regulation of biological process;5.8769780945854e-07!GO:0009141;nucleoside triphosphate metabolic process;6.12919338235699e-07!GO:0005667;transcription factor complex;6.60687596030214e-07!GO:0017038;protein import;6.60687596030214e-07!GO:0008639;small protein conjugating enzyme activity;7.57648565078339e-07!GO:0016564;transcription repressor activity;8.69470715395057e-07!GO:0009152;purine ribonucleotide biosynthetic process;8.76544854091894e-07!GO:0050789;regulation of biological process;9.18253203749596e-07!GO:0006913;nucleocytoplasmic transport;1.1251009173591e-06!GO:0004842;ubiquitin-protein ligase activity;1.17573306902863e-06!GO:0016604;nuclear body;1.46171632028693e-06!GO:0006164;purine nucleotide biosynthetic process;1.51173851689238e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.87777010135209e-06!GO:0051169;nuclear transport;2.02905613975271e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.23392121525627e-06!GO:0019787;small conjugating protein ligase activity;2.63118469714213e-06!GO:0015986;ATP synthesis coupled proton transport;2.86669679393445e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.86669679393445e-06!GO:0046034;ATP metabolic process;2.91734711757242e-06!GO:0008092;cytoskeletal protein binding;2.96686325959393e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.00387274562705e-06!GO:0008565;protein transporter activity;3.34205326676498e-06!GO:0045259;proton-transporting ATP synthase complex;3.48385888652302e-06!GO:0006461;protein complex assembly;3.76789923708047e-06!GO:0051276;chromosome organization and biogenesis;3.79320146789638e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.20265395096332e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.20265395096332e-06!GO:0005768;endosome;4.27240583328094e-06!GO:0003924;GTPase activity;4.50728887525045e-06!GO:0009060;aerobic respiration;4.52698883903492e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.8033194223824e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.8033194223824e-06!GO:0051726;regulation of cell cycle;4.99735789499203e-06!GO:0003743;translation initiation factor activity;5.0047012394669e-06!GO:0016481;negative regulation of transcription;5.46715204019375e-06!GO:0032553;ribonucleotide binding;5.46715204019375e-06!GO:0032555;purine ribonucleotide binding;5.46715204019375e-06!GO:0009260;ribonucleotide biosynthetic process;5.75722239579684e-06!GO:0003714;transcription corepressor activity;5.83461824152732e-06!GO:0031324;negative regulation of cellular metabolic process;5.9211781924746e-06!GO:0003713;transcription coactivator activity;6.19189315847196e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.32054239014716e-06!GO:0000074;regulation of progression through cell cycle;6.46306492992674e-06!GO:0045786;negative regulation of progression through cell cycle;6.46306492992674e-06!GO:0005635;nuclear envelope;6.85880220974196e-06!GO:0008654;phospholipid biosynthetic process;7.65216709675304e-06!GO:0016563;transcription activator activity;9.21694348776452e-06!GO:0044440;endosomal part;9.21694348776452e-06!GO:0010008;endosome membrane;9.21694348776452e-06!GO:0007005;mitochondrion organization and biogenesis;9.43535249331874e-06!GO:0030120;vesicle coat;9.76607844728192e-06!GO:0030662;coated vesicle membrane;9.76607844728192e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.05688132966271e-05!GO:0031965;nuclear membrane;1.17284207243322e-05!GO:0016881;acid-amino acid ligase activity;1.24053421999283e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.30491817968522e-05!GO:0006399;tRNA metabolic process;1.36339841571239e-05!GO:0022402;cell cycle process;1.41359152126315e-05!GO:0019829;cation-transporting ATPase activity;1.42898115694886e-05!GO:0017076;purine nucleotide binding;1.56915573807465e-05!GO:0016491;oxidoreductase activity;1.6728533540804e-05!GO:0044431;Golgi apparatus part;1.7653320737897e-05!GO:0065004;protein-DNA complex assembly;1.7653320737897e-05!GO:0006333;chromatin assembly or disassembly;2.09551033598291e-05!GO:0009117;nucleotide metabolic process;2.09551033598291e-05!GO:0031988;membrane-bound vesicle;2.16526577552854e-05!GO:0016568;chromatin modification;2.18598431461089e-05!GO:0005773;vacuole;2.18598431461089e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.18598431461089e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.20101468747197e-05!GO:0006446;regulation of translational initiation;2.21739496364181e-05!GO:0006754;ATP biosynthetic process;2.41910891065423e-05!GO:0006753;nucleoside phosphate metabolic process;2.41910891065423e-05!GO:0045333;cellular respiration;2.43670766566314e-05!GO:0009108;coenzyme biosynthetic process;2.65514366178588e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.81012156375148e-05!GO:0016853;isomerase activity;2.86518457114943e-05!GO:0042254;ribosome biogenesis and assembly;2.96410139309288e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.64246004470568e-05!GO:0004812;aminoacyl-tRNA ligase activity;3.64246004470568e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.64246004470568e-05!GO:0048475;coated membrane;3.75193866306483e-05!GO:0030117;membrane coat;3.75193866306483e-05!GO:0006413;translational initiation;4.08757811194997e-05!GO:0016607;nuclear speck;4.31970562199187e-05!GO:0005762;mitochondrial large ribosomal subunit;4.63643880998065e-05!GO:0000315;organellar large ribosomal subunit;4.63643880998065e-05!GO:0030029;actin filament-based process;5.65878112174917e-05!GO:0007517;muscle development;5.70029182585345e-05!GO:0009056;catabolic process;5.70332962472824e-05!GO:0009892;negative regulation of metabolic process;6.28814391343315e-05!GO:0016049;cell growth;6.71974878435949e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.1478795913607e-05!GO:0008361;regulation of cell size;7.25586190238901e-05!GO:0005770;late endosome;7.32814894882845e-05!GO:0031252;leading edge;8.37974848135718e-05!GO:0046474;glycerophospholipid biosynthetic process;8.81064205459848e-05!GO:0006752;group transfer coenzyme metabolic process;9.94874122010825e-05!GO:0043038;amino acid activation;0.000100742509739721!GO:0006418;tRNA aminoacylation for protein translation;0.000100742509739721!GO:0043039;tRNA aminoacylation;0.000100742509739721!GO:0065002;intracellular protein transport across a membrane;0.000116413109637704!GO:0006099;tricarboxylic acid cycle;0.000125582094681327!GO:0046356;acetyl-CoA catabolic process;0.000125582094681327!GO:0005905;coated pit;0.000129358899494063!GO:0004298;threonine endopeptidase activity;0.000129358899494063!GO:0016859;cis-trans isomerase activity;0.000129358899494063!GO:0051427;hormone receptor binding;0.000143334687671565!GO:0042981;regulation of apoptosis;0.000143657706908723!GO:0045892;negative regulation of transcription, DNA-dependent;0.000143762029900668!GO:0043067;regulation of programmed cell death;0.000145719336200534!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000151636544591362!GO:0031497;chromatin assembly;0.000166732360540335!GO:0000785;chromatin;0.00017290102796043!GO:0000323;lytic vacuole;0.000181910229817607!GO:0005764;lysosome;0.000181910229817607!GO:0006091;generation of precursor metabolites and energy;0.000189783286853243!GO:0006606;protein import into nucleus;0.000199292160019714!GO:0000245;spliceosome assembly;0.000199292160019714!GO:0044453;nuclear membrane part;0.000199292160019714!GO:0016740;transferase activity;0.000220179168066272!GO:0051170;nuclear import;0.000224390852999361!GO:0006334;nucleosome assembly;0.000225695229892825!GO:0032559;adenyl ribonucleotide binding;0.00022838326615817!GO:0001558;regulation of cell growth;0.000241381716957921!GO:0035257;nuclear hormone receptor binding;0.000245200680970117!GO:0006084;acetyl-CoA metabolic process;0.000252593275889758!GO:0033116;ER-Golgi intermediate compartment membrane;0.000255567948865908!GO:0005524;ATP binding;0.000273340758589777!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000276478935377751!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000305291485267882!GO:0015002;heme-copper terminal oxidase activity;0.000305291485267882!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000305291485267882!GO:0004129;cytochrome-c oxidase activity;0.000305291485267882!GO:0051187;cofactor catabolic process;0.00032442430849106!GO:0031410;cytoplasmic vesicle;0.000334930574555368!GO:0045454;cell redox homeostasis;0.000338118369415697!GO:0006916;anti-apoptosis;0.000376082095452591!GO:0016126;sterol biosynthetic process;0.000385948309177556!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000388100071979124!GO:0031982;vesicle;0.000388516533852677!GO:0008610;lipid biosynthetic process;0.000399728420223503!GO:0003697;single-stranded DNA binding;0.000405658008221977!GO:0000314;organellar small ribosomal subunit;0.000418297438916168!GO:0005763;mitochondrial small ribosomal subunit;0.000418297438916168!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000419314206858618!GO:0005865;striated muscle thin filament;0.00042249771952741!GO:0005791;rough endoplasmic reticulum;0.00042614743883436!GO:0051789;response to protein stimulus;0.00046538676671806!GO:0006986;response to unfolded protein;0.00046538676671806!GO:0030176;integral to endoplasmic reticulum membrane;0.000482236771061491!GO:0007010;cytoskeleton organization and biogenesis;0.000498178782168369!GO:0009109;coenzyme catabolic process;0.000528777225473344!GO:0032446;protein modification by small protein conjugation;0.000606931042135597!GO:0042623;ATPase activity, coupled;0.000613000206728116!GO:0007264;small GTPase mediated signal transduction;0.000624743827148475!GO:0000139;Golgi membrane;0.000699207063936116!GO:0030554;adenyl nucleotide binding;0.000699207063936116!GO:0030867;rough endoplasmic reticulum membrane;0.00072868461724026!GO:0044262;cellular carbohydrate metabolic process;0.000730593909192396!GO:0008286;insulin receptor signaling pathway;0.000735800417801421!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000774310458818262!GO:0044449;contractile fiber part;0.000820089413400737!GO:0019899;enzyme binding;0.000827829197068201!GO:0065007;biological regulation;0.00084613079064715!GO:0005581;collagen;0.000919737477647234!GO:0016567;protein ubiquitination;0.000923802004001741!GO:0005798;Golgi-associated vesicle;0.00102032850756569!GO:0016044;membrane organization and biogenesis;0.00102476468489328!GO:0006364;rRNA processing;0.00106809321997565!GO:0006974;response to DNA damage stimulus;0.00110337280628163!GO:0008250;oligosaccharyl transferase complex;0.00113250327171835!GO:0043069;negative regulation of programmed cell death;0.00113250327171835!GO:0051246;regulation of protein metabolic process;0.00131931118978566!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00132001975264814!GO:0030133;transport vesicle;0.00132916894647651!GO:0040008;regulation of growth;0.00139159787368096!GO:0015629;actin cytoskeleton;0.00139159787368096!GO:0006793;phosphorus metabolic process;0.00139159787368096!GO:0006796;phosphate metabolic process;0.00139159787368096!GO:0030132;clathrin coat of coated pit;0.00141847964716151!GO:0043066;negative regulation of apoptosis;0.00144930021582378!GO:0005525;GTP binding;0.00146285773190412!GO:0043566;structure-specific DNA binding;0.00159235719670795!GO:0000151;ubiquitin ligase complex;0.00162096835275934!GO:0016072;rRNA metabolic process;0.00163370207598149!GO:0016887;ATPase activity;0.00169857545296903!GO:0000278;mitotic cell cycle;0.00169857545296903!GO:0043292;contractile fiber;0.00170151496807818!GO:0046467;membrane lipid biosynthetic process;0.00172159670982583!GO:0015980;energy derivation by oxidation of organic compounds;0.00184040823520183!GO:0006979;response to oxidative stress;0.00197949110375715!GO:0006650;glycerophospholipid metabolic process;0.00197949110375715!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00205026973291522!GO:0004667;prostaglandin-D synthase activity;0.00205026973291522!GO:0050802;circadian sleep/wake cycle, sleep;0.00205026973291522!GO:0022410;circadian sleep/wake cycle process;0.00205026973291522!GO:0042749;regulation of circadian sleep/wake cycle;0.00205026973291522!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00205026973291522!GO:0016779;nucleotidyltransferase activity;0.00208602295813848!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0021014080743906!GO:0043623;cellular protein complex assembly;0.00218000110682489!GO:0005769;early endosome;0.00222840747141387!GO:0051920;peroxiredoxin activity;0.00223004788127635!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00224769995936802!GO:0045941;positive regulation of transcription;0.00228316973253722!GO:0003899;DNA-directed RNA polymerase activity;0.00232762921282702!GO:0019867;outer membrane;0.00233961058003357!GO:0046489;phosphoinositide biosynthetic process;0.00237595663327821!GO:0019843;rRNA binding;0.0023992477483949!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00268290504616864!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00268290504616864!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00269395206465655!GO:0014706;striated muscle development;0.00273289983276311!GO:0018196;peptidyl-asparagine modification;0.00275538678246053!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00275538678246053!GO:0005048;signal sequence binding;0.00286958651135661!GO:0005694;chromosome;0.0028793527430216!GO:0031968;organelle outer membrane;0.00303042312517199!GO:0007006;mitochondrial membrane organization and biogenesis;0.0030587994748497!GO:0007519;skeletal muscle development;0.00315828267504888!GO:0007040;lysosome organization and biogenesis;0.0032671705247516!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00331134011991067!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00331134011991067!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00331134011991067!GO:0015630;microtubule cytoskeleton;0.00335081806497046!GO:0043681;protein import into mitochondrion;0.00335287011664863!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00339373503343471!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00342013804776278!GO:0019222;regulation of metabolic process;0.0034663062371589!GO:0043488;regulation of mRNA stability;0.00350411205297622!GO:0043487;regulation of RNA stability;0.00350411205297622!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00358484906714855!GO:0016310;phosphorylation;0.003611015018584!GO:0005643;nuclear pore;0.00364397794339192!GO:0006695;cholesterol biosynthetic process;0.0036627851107915!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00388140711839981!GO:0022890;inorganic cation transmembrane transporter activity;0.00396255624599103!GO:0048522;positive regulation of cellular process;0.00408728682847787!GO:0006613;cotranslational protein targeting to membrane;0.00418590294118509!GO:0046930;pore complex;0.00419175598893078!GO:0031902;late endosome membrane;0.00436101259657981!GO:0033673;negative regulation of kinase activity;0.00456878378409863!GO:0006469;negative regulation of protein kinase activity;0.00456878378409863!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00456878378409863!GO:0004576;oligosaccharyl transferase activity;0.00456878378409863!GO:0005741;mitochondrial outer membrane;0.00508632760765869!GO:0051101;regulation of DNA binding;0.00517016698630026!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00520143583254967!GO:0032561;guanyl ribonucleotide binding;0.00544582778914528!GO:0019001;guanyl nucleotide binding;0.00544582778914528!GO:0006281;DNA repair;0.00546520867344438!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00548407896477963!GO:0007265;Ras protein signal transduction;0.00556565157405497!GO:0051348;negative regulation of transferase activity;0.00557868919850681!GO:0044427;chromosomal part;0.00558816529882467!GO:0009165;nucleotide biosynthetic process;0.00591525684460924!GO:0006740;NADPH regeneration;0.00616599226879055!GO:0006098;pentose-phosphate shunt;0.00616599226879055!GO:0005774;vacuolar membrane;0.00641629757108808!GO:0006778;porphyrin metabolic process;0.00641629757108808!GO:0033013;tetrapyrrole metabolic process;0.00641629757108808!GO:0044420;extracellular matrix part;0.00662080043158987!GO:0045893;positive regulation of transcription, DNA-dependent;0.00698984133128159!GO:0006818;hydrogen transport;0.00719383659849825!GO:0031272;regulation of pseudopodium formation;0.00721882569389024!GO:0031269;pseudopodium formation;0.00721882569389024!GO:0031344;regulation of cell projection organization and biogenesis;0.00721882569389024!GO:0031268;pseudopodium organization and biogenesis;0.00721882569389024!GO:0031346;positive regulation of cell projection organization and biogenesis;0.00721882569389024!GO:0031274;positive regulation of pseudopodium formation;0.00721882569389024!GO:0051329;interphase of mitotic cell cycle;0.00725402046620344!GO:0065009;regulation of a molecular function;0.00733974046577619!GO:0015992;proton transport;0.00774076001308137!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00787387353491852!GO:0015399;primary active transmembrane transporter activity;0.00787387353491852!GO:0003779;actin binding;0.00787387353491852!GO:0006414;translational elongation;0.00815307330467419!GO:0040029;regulation of gene expression, epigenetic;0.00815307330467419!GO:0007160;cell-matrix adhesion;0.00819291471874169!GO:0016860;intramolecular oxidoreductase activity;0.00830707250646003!GO:0055003;cardiac myofibril assembly;0.00838987455239857!GO:0055013;cardiac muscle cell development;0.00838987455239857!GO:0006626;protein targeting to mitochondrion;0.00852243669465354!GO:0006509;membrane protein ectodomain proteolysis;0.00868479345933936!GO:0033619;membrane protein proteolysis;0.00868479345933936!GO:0017166;vinculin binding;0.00881834407937483!GO:0043284;biopolymer biosynthetic process;0.00927377941643332!GO:0006595;polyamine metabolic process;0.00931312358912039!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0093720693161361!GO:0031589;cell-substrate adhesion;0.0100901826021748!GO:0006839;mitochondrial transport;0.0101069235875681!GO:0007033;vacuole organization and biogenesis;0.010112345699289!GO:0006779;porphyrin biosynthetic process;0.0103412880764563!GO:0033014;tetrapyrrole biosynthetic process;0.0103412880764563!GO:0008026;ATP-dependent helicase activity;0.0107315269580069!GO:0043021;ribonucleoprotein binding;0.0110872377001495!GO:0005885;Arp2/3 protein complex;0.0114600824755586!GO:0042158;lipoprotein biosynthetic process;0.0115767349221059!GO:0007243;protein kinase cascade;0.0118256308630577!GO:0005684;U2-dependent spliceosome;0.0121482011452947!GO:0030118;clathrin coat;0.0122068951826736!GO:0004860;protein kinase inhibitor activity;0.0127604198345749!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0131937458985033!GO:0016272;prefoldin complex;0.0132501969174934!GO:0004386;helicase activity;0.0132501969174934!GO:0009719;response to endogenous stimulus;0.013435933042352!GO:0001726;ruffle;0.0138417397245707!GO:0006506;GPI anchor biosynthetic process;0.0145755063045521!GO:0042168;heme metabolic process;0.0147369567126635!GO:0000786;nucleosome;0.0148268496033626!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0148268496033626!GO:0048487;beta-tubulin binding;0.0148281227263293!GO:0030041;actin filament polymerization;0.0149689866874399!GO:0005765;lysosomal membrane;0.0151867869901609!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0154272705467649!GO:0044437;vacuolar part;0.0159393823631269!GO:0003756;protein disulfide isomerase activity;0.0160800937111032!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0160800937111032!GO:0031301;integral to organelle membrane;0.0160960829183504!GO:0051287;NAD binding;0.0162041270968676!GO:0006505;GPI anchor metabolic process;0.0166885662675868!GO:0007179;transforming growth factor beta receptor signaling pathway;0.017113277711598!GO:0033559;unsaturated fatty acid metabolic process;0.0172972038198932!GO:0006636;unsaturated fatty acid biosynthetic process;0.0172972038198932!GO:0006612;protein targeting to membrane;0.0173809274158227!GO:0006402;mRNA catabolic process;0.0178385731331571!GO:0030658;transport vesicle membrane;0.0180019764869227!GO:0006497;protein amino acid lipidation;0.0181993846018002!GO:0030308;negative regulation of cell growth;0.0182895522773484!GO:0030880;RNA polymerase complex;0.0182895522773484!GO:0007050;cell cycle arrest;0.0183362644114678!GO:0006643;membrane lipid metabolic process;0.0186718199562802!GO:0045792;negative regulation of cell size;0.0193786001963777!GO:0030663;COPI coated vesicle membrane;0.0196050486220837!GO:0030126;COPI vesicle coat;0.0196050486220837!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0196482313160258!GO:0005869;dynactin complex;0.0196903027205415!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0198020881805403!GO:0030659;cytoplasmic vesicle membrane;0.0206063632547501!GO:0030137;COPI-coated vesicle;0.0207758478928244!GO:0051098;regulation of binding;0.0209478206518529!GO:0030384;phosphoinositide metabolic process;0.0211577866380308!GO:0000118;histone deacetylase complex;0.0211577866380308!GO:0048468;cell development;0.0211577866380308!GO:0006644;phospholipid metabolic process;0.0215945987303802!GO:0045334;clathrin-coated endocytic vesicle;0.0215945987303802!GO:0003746;translation elongation factor activity;0.021606272311414!GO:0042802;identical protein binding;0.0220695526617977!GO:0006260;DNA replication;0.0223610020759221!GO:0050657;nucleic acid transport;0.0223610020759221!GO:0051236;establishment of RNA localization;0.0223610020759221!GO:0050658;RNA transport;0.0223610020759221!GO:0016787;hydrolase activity;0.0225782508856703!GO:0051325;interphase;0.0229842288706712!GO:0006783;heme biosynthetic process;0.0231574324967781!GO:0031072;heat shock protein binding;0.0236621661161366!GO:0015631;tubulin binding;0.0238584893379237!GO:0006403;RNA localization;0.024288655269366!GO:0048471;perinuclear region of cytoplasm;0.0247397027979426!GO:0016125;sterol metabolic process;0.0251968543453143!GO:0003729;mRNA binding;0.0256201390333281!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0256396997213259!GO:0010257;NADH dehydrogenase complex assembly;0.0256396997213259!GO:0033108;mitochondrial respiratory chain complex assembly;0.0256396997213259!GO:0032507;maintenance of cellular protein localization;0.0260068334399326!GO:0008154;actin polymerization and/or depolymerization;0.0260618933207601!GO:0006891;intra-Golgi vesicle-mediated transport;0.0270382495065855!GO:0030016;myofibril;0.0273395168082604!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0274979557166387!GO:0030031;cell projection biogenesis;0.0275821270080119!GO:0005586;collagen type III;0.0278391291965953!GO:0006013;mannose metabolic process;0.0279977439353242!GO:0030119;AP-type membrane coat adaptor complex;0.028641752891865!GO:0030125;clathrin vesicle coat;0.0286910675294558!GO:0030665;clathrin coated vesicle membrane;0.0286910675294558!GO:0009966;regulation of signal transduction;0.0295602790037833!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0299141050158247!GO:0006383;transcription from RNA polymerase III promoter;0.0301640243543409!GO:0050749;apolipoprotein E receptor binding;0.0301640243543409!GO:0051128;regulation of cellular component organization and biogenesis;0.0321458076169068!GO:0019318;hexose metabolic process;0.0327713515518641!GO:0030027;lamellipodium;0.0329878236968715!GO:0008632;apoptotic program;0.0329878236968715!GO:0044433;cytoplasmic vesicle part;0.0330702499359941!GO:0005583;fibrillar collagen;0.0330957052644659!GO:0005862;muscle thin filament tropomyosin;0.0333976731610844!GO:0035258;steroid hormone receptor binding;0.0334811856176934!GO:0030128;clathrin coat of endocytic vesicle;0.0336698769167448!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0336698769167448!GO:0030122;AP-2 adaptor complex;0.0336698769167448!GO:0048518;positive regulation of biological process;0.0337735074295148!GO:0030134;ER to Golgi transport vesicle;0.0338981283150564!GO:0030660;Golgi-associated vesicle membrane;0.0342190175437654!GO:0051252;regulation of RNA metabolic process;0.0346739047171179!GO:0006739;NADP metabolic process;0.0349926910433447!GO:0006767;water-soluble vitamin metabolic process;0.0356160228728885!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.03622310475277!GO:0000428;DNA-directed RNA polymerase complex;0.03622310475277!GO:0005813;centrosome;0.0372962183985!GO:0017049;GTP-Rho binding;0.0388885429241708!GO:0005100;Rho GTPase activator activity;0.0390335663475495!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0394933496463142!GO:0005996;monosaccharide metabolic process;0.0396762103804112!GO:0030127;COPII vesicle coat;0.0399524966454403!GO:0012507;ER to Golgi transport vesicle membrane;0.0399524966454403!GO:0030433;ER-associated protein catabolic process;0.0399880410772866!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0399880410772866!GO:0051235;maintenance of localization;0.0401151323597465!GO:0006733;oxidoreduction coenzyme metabolic process;0.0401151323597465!GO:0046519;sphingoid metabolic process;0.0401714574931444!GO:0043492;ATPase activity, coupled to movement of substances;0.040411971992683!GO:0031901;early endosome membrane;0.0407296371263409!GO:0006350;transcription;0.0408986756938738!GO:0019798;procollagen-proline dioxygenase activity;0.041013620262452!GO:0008033;tRNA processing;0.0412154814501904!GO:0035035;histone acetyltransferase binding;0.0415135387079631!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0417002711745247!GO:0000902;cell morphogenesis;0.0418173611774958!GO:0032989;cellular structure morphogenesis;0.0418173611774958!GO:0000030;mannosyltransferase activity;0.04315418292182!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0436384750290873!GO:0045926;negative regulation of growth;0.0438283266660315!GO:0030131;clathrin adaptor complex;0.0439472317110852!GO:0004177;aminopeptidase activity;0.0439472317110852!GO:0007021;tubulin folding;0.0439472317110852!GO:0031543;peptidyl-proline dioxygenase activity;0.0440447837436592!GO:0030508;thiol-disulfide exchange intermediate activity;0.0446977196880417!GO:0030017;sarcomere;0.0449970951853535!GO:0016197;endosome transport;0.0455203836753532!GO:0031418;L-ascorbic acid binding;0.0455699270373831!GO:0051775;response to redox state;0.0459246768226859!GO:0006980;redox signal response;0.0459246768226859!GO:0003724;RNA helicase activity;0.0460306931133139!GO:0008047;enzyme activator activity;0.046816899950859!GO:0016363;nuclear matrix;0.0472027426482498!GO:0048741;skeletal muscle fiber development;0.0478438167041129!GO:0048747;muscle fiber development;0.0478438167041129!GO:0050811;GABA receptor binding;0.0484045742475985!GO:0008139;nuclear localization sequence binding;0.0485346327880265!GO:0006007;glucose catabolic process;0.0485346327880265!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0485346327880265!GO:0055083;monovalent inorganic anion homeostasis;0.0485346327880265!GO:0055064;chloride ion homeostasis;0.0485346327880265!GO:0030644;cellular chloride ion homeostasis;0.0485346327880265!GO:0046822;regulation of nucleocytoplasmic transport;0.0496276833884643
|sample_id=11571
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=brain
|top_motifs=TAL1_TCF{3,4,12}:2.90201906003;ESR1:2.84359123263;RXR{A,B,G}:2.48468646214;RXRA_VDR{dimer}:2.44708363043;NR5A1,2:2.42253959001;ZIC1..3:2.3612843481;GTF2A1,2:2.32100820896;TFAP4:2.31928388377;ZNF423:2.29685367775;TFCP2:2.2351107951;GLI1..3:2.22447988681;EBF1:2.14751292678;ESRRA:1.87455603111;TFAP2{A,C}:1.84313701765;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58240348343;ZNF238:1.57213006589;HES1:1.47363486487;MEF2{A,B,C,D}:1.46431748312;GZF1:1.28704904574;SRF:1.26543889199;PATZ1:1.25523237202;ZNF148:1.20870403976;RREB1:1.17372574405;TFAP2B:1.1318602713;NHLH1,2:1.12812320852;FOXM1:1.10511591171;MAZ:1.09773108999;TLX1..3_NFIC{dimer}:1.06733356495;PAX1,9:1.06481644893;XCPE1{core}:1.0636268821;IKZF1:0.978297845525;PAX5:0.946917618464;SP1:0.942925474771;HAND1,2:0.922152889358;MYOD1:0.905710556192;NR3C1:0.902580900477;TBP:0.873285967689;HIC1:0.852791730343;GTF2I:0.827872814593;ZBTB6:0.823915800478;ATF6:0.810226416356;FOXL1:0.780603544548;RORA:0.778413814717;TEAD1:0.739417093177;GFI1B:0.686796782278;MED-1{core}:0.680974092;NR6A1:0.679146873087;MZF1:0.619656152197;SPZ1:0.589045965608;LEF1_TCF7_TCF7L1,2:0.578496207275;HOX{A5,B5}:0.575869246994;SOX5:0.559374397346;KLF4:0.525301370726;UFEwm:0.518642225761;XBP1:0.482769086033;REST:0.472724334909;TP53:0.446398434865;POU6F1:0.443272104781;HMX1:0.401827471602;EGR1..3:0.37662931782;SMAD1..7,9:0.374720982819;NKX2-3_NKX2-5:0.367769849239;bHLH_family:0.331427050384;GCM1,2:0.313962072075;HNF4A_NR2F1,2:0.305029791046;SOX17:0.298858468943;HOX{A4,D4}:0.293911659211;AR:0.268518775241;TBX4,5:0.264978672342;NR1H4:0.253607847984;LHX3,4:0.246499025243;NANOG{mouse}:0.2414884719;GFI1:0.230913458529;T:0.22248378772;LMO2:0.219037883844;GATA4:0.208891402412;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.196850671804;YY1:0.143727141891;STAT2,4,6:0.130809433038;RBPJ:0.126680925597;DBP:0.116374216223;NFE2L2:0.0727644552708;ALX4:0.0692627386634;RFX1:0.0654252553897;SOX{8,9,10}:0.0327045218693;MTE{core}:0.0302497426179;NFE2L1:0.0197109601946;PPARG:0.0169724350129;ZNF143:0.00933028103891;MYFfamily:-0.00158332455221;TOPORS:-0.0273932606597;NFIL3:-0.0316633272599;MYBL2:-0.0450925331406;HNF1A:-0.0726247067957;ONECUT1,2:-0.0833277033921;POU3F1..4:-0.105798320154;RUNX1..3:-0.14127349573;ZNF384:-0.168787970023;BACH2:-0.178629194117;EN1,2:-0.196408382312;SNAI1..3:-0.206740014224;MTF1:-0.220152365436;EP300:-0.253779266669;NFE2:-0.285293700043;FOSL2:-0.28615155447;TGIF1:-0.298945424738;PRDM1:-0.316520696673;NFKB1_REL_RELA:-0.317221850952;STAT5{A,B}:-0.320235874044;ZFP161:-0.32110833637;HLF:-0.329258732376;JUN:-0.335600148218;AIRE:-0.349375286723;EVI1:-0.351750420467;PAX2:-0.358463323589;FOS_FOS{B,L1}_JUN{B,D}:-0.361026247145;POU2F1..3:-0.400798363345;MAFB:-0.418583774135;NFY{A,B,C}:-0.443909800642;CUX2:-0.479806715463;PRRX1,2:-0.558529508783;PBX1:-0.582400859527;ETS1,2:-0.608329053729;NKX6-1,2:-0.613833468116;AHR_ARNT_ARNT2:-0.619316329602;CRX:-0.62823499031;BPTF:-0.635794068664;SPIB:-0.65359879463;NRF1:-0.665890474116;FOXP3:-0.678913299609;FOXO1,3,4:-0.696602222799;RFX2..5_RFXANK_RFXAP:-0.701357384044;HOX{A6,A7,B6,B7}:-0.713797074682;NANOG:-0.728611881049;IRF1,2:-0.735733687065;NFATC1..3:-0.742718135255;GATA6:-0.746351521564;HSF1,2:-0.74661034909;PAX3,7:-0.774439644527;SPI1:-0.777054907291;ARID5B:-0.77984649505;NKX3-2:-0.783766096498;IRF7:-0.786065307561;CEBPA,B_DDIT3:-0.790419871688;SOX2:-0.828025239584;STAT1,3:-0.832760780992;FOX{F1,F2,J1}:-0.835570227643;VSX1,2:-0.85401002916;ALX1:-0.855302587318;HIF1A:-0.886354120157;TFDP1:-0.887665892684;SREBF1,2:-0.892898641822;ATF4:-0.910735941276;PAX4:-0.914660882724;CREB1:-0.916596170921;PAX6:-0.92122899692;BREu{core}:-0.937055424679;ZEB1:-0.960196303735;NKX2-2,8:-0.961794127821;NFIX:-0.989989247801;ELK1,4_GABP{A,B1}:-1.00161912885;FOX{D1,D2}:-1.02367766121;TLX2:-1.02775593068;FOXP1:-1.05552642872;NKX3-1:-1.11538746336;ATF2:-1.11557147412;FOXD3:-1.14109650773;OCT4_SOX2{dimer}:-1.16916092424;ELF1,2,4:-1.18816893968;E2F1..5:-1.24119486259;ADNP_IRX_SIX_ZHX:-1.2769811533;POU1F1:-1.28986181333;POU5F1:-1.30377749777;TEF:-1.32115098971;MYB:-1.32388406004;HMGA1,2:-1.33161860918;DMAP1_NCOR{1,2}_SMARC:-1.33452380667;FOXA2:-1.37862075102;PAX8:-1.39765844268;ATF5_CREB3:-1.42027060316;PITX1..3:-1.49068232584;HOXA9_MEIS1:-1.51118191888;CDX1,2,4:-1.59052782801;CDC5L:-1.60929640768;IKZF2:-1.61987266909;PDX1:-1.75607577243;FOXQ1:-1.7728109007;HBP1_HMGB_SSRP1_UBTF:-1.88460401893;ZBTB16:-1.88621963947;FOX{I1,J2}:-1.89863382118;NKX2-1,4:-1.90873797092;FOXN1:-1.98628936386
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11571-120E5;search_select_hide=table117:FF:11571-120E5
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Pericytes, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12079
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebrain
dev stageNA
sexNA
ageNA
cell typepericyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC1205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005839
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12079 CAGE DRX008397 DRR009269
Accession ID Hg19

Library idBAMCTSS
CNhs12079 DRZ000694 DRZ002079
Accession ID Hg38

Library idBAMCTSS
CNhs12079 DRZ012044 DRZ013429
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
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C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12079

Jaspar motifP-value
MA0002.20.759
MA0003.10.193
MA0004.10.839
MA0006.10.363
MA0007.10.214
MA0009.10.268
MA0014.10.542
MA0017.10.375
MA0018.20.0826
MA0019.10.0363
MA0024.10.00121
MA0025.10.42
MA0027.10.524
MA0028.10.0202
MA0029.10.43
MA0030.10.559
MA0031.10.0716
MA0035.20.78
MA0038.10.513
MA0039.20.796
MA0040.10.281
MA0041.10.211
MA0042.10.467
MA0043.10.00342
MA0046.10.259
MA0047.20.347
MA0048.10.628
MA0050.10.00362
MA0051.10.00322
MA0052.10.00135
MA0055.10.887
MA0057.10.595
MA0058.10.904
MA0059.10.61
MA0060.10.711
MA0061.10.862
MA0062.25.67473e-6
MA0065.20.205
MA0066.10.136
MA0067.10.062
MA0068.10.328
MA0069.10.186
MA0070.10.0563
MA0071.10.0364
MA0072.10.479
MA0073.10.869
MA0074.10.368
MA0076.10.00268
MA0077.10.257
MA0078.10.643
MA0079.20.316
MA0080.26.65974e-8
MA0081.10.015
MA0083.14.89071e-4
MA0084.10.942
MA0087.10.566
MA0088.10.614
MA0090.10.0307
MA0091.11.21064e-5
MA0092.10.851
MA0093.10.925
MA0099.20.0236
MA0100.10.104
MA0101.10.0845
MA0102.27.81094e-4
MA0103.10.915
MA0104.20.332
MA0105.10.963
MA0106.10.815
MA0107.10.207
MA0108.26.9081e-10
MA0111.10.285
MA0112.20.0118
MA0113.10.0345
MA0114.10.347
MA0115.10.606
MA0116.10.843
MA0117.10.125
MA0119.10.457
MA0122.10.575
MA0124.10.628
MA0125.10.911
MA0131.10.24
MA0135.10.0377
MA0136.13.40761e-12
MA0137.20.154
MA0138.20.16
MA0139.10.75
MA0140.10.342
MA0141.10.0472
MA0142.10.217
MA0143.10.786
MA0144.10.508
MA0145.10.27
MA0146.10.0126
MA0147.10.331
MA0148.10.303
MA0149.10.0948
MA0150.10.0684
MA0152.10.598
MA0153.10.229
MA0154.10.16
MA0155.10.0147
MA0156.17.29133e-11
MA0157.10.0826
MA0159.10.619
MA0160.10.542
MA0162.10.139
MA0163.10.226
MA0164.10.372
MA0258.10.0171
MA0259.10.553



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12079

Novel motifP-value
10.607
100.121
1000.994
1010.529
1020.894
1030.932
1040.222
1050.262
1060.219
1070.0828
1080.328
1090.123
110.148
1100.181
1110.809
1120.942
1130.0026
1140.543
1150.11
1160.149
1170.96
1180.926
1190.928
120.835
1200.11
1210.716
1220.0791
1233.91275e-4
1240.631
1250.158
1260.723
1270.934
1280.309
1290.583
130.893
1300.667
1310.948
1320.11
1330.814
1340.0858
1350.866
1360.661
1370.03
1380.591
1390.262
140.929
1400.745
1410.256
1420.67
1430.699
1440.379
1450.549
1460.331
1470.116
1480.397
1490.0683
150.26
1500.487
1510.687
1520.161
1530.303
1540.0762
1550.712
1560.706
1570.574
1580.998
1590.536
160.131
1600.0939
1610.749
1620.0883
1630.552
1640.381
1650.125
1660.701
1670.0752
1680.949
1690.0478
170.286
180.36
190.0529
20.124
200.642
210.816
220.0537
230.29
240.551
250.559
260.236
270.291
280.185
290.902
30.932
300.0663
310.36
327.74013e-11
330.882
340.0937
350.916
360.189
370.36
380.458
390.467
40.852
400.335
410.337
420.877
430.417
440.116
450.17
460.382
470.739
480.388
490.493
50.539
500.386
510.393
520.449
530.414
540.393
550.897
560.32
570.623
580.34
590.0102
60.395
600.442
610.92
620.63
630.541
640.397
650.0412
660.551
670.929
680.0519
690.0932
70.915
700.318
710.707
720.343
730.0989
740.14
750.899
760.291
770.0196
780.945
790.00178
80.229
800.615
810.675
820.107
830.5
840.271
850.0459
860.961
870.822
880.535
890.0807
90.0649
900.0169
910.365
920.764
930.734
940.729
950.389
960.688
970.481
980.298
990.0147



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12079


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0002575 (central nervous system pericyte)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000133 (human pericyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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