FF:11763-123H8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005664 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008576;DRR009448;DRZ000873;DRZ002258;DRZ012223;DRZ013608 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0007846,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000043,UBERON:0007845,UBERON:0002204 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000499,CL:0000630,CL:0000135,CL:0000386,CL:0000255,CL:0000388 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000280 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:15726296..15726315,-!p1@MEOX2!1.97!92.63!MEOX2;;chr1:170632285..170632309,+!p1@PRRX1!1.93!95.60!PRRX1;;chr10:28034739..28034756,-!p1@MKX!1.92!82.95!MKX;;chr9:132427883..132427951,+!p2@PRRX2!1.86!71.80!PRRX2;;chr19:13134772..13134822,+!p2@NFIX!1.81!91.14!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.74!70.31!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.66!45.01!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.59!51.34!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.56!57.66!TCF12;;chr7:15726243..15726293,-!p2@MEOX2!1.53!33.11!MEOX2;;chr2:19558373..19558392,-!p1@OSR1!1.52!85.93!OSR1;;chr5:134369905..134369972,-!p1@PITX1!1.52!48.73!PITX1;;chr7:19157248..19157268,-!p1@TWIST1!1.51!85.19!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!148.80!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.39!86.30!SIX1;;chr2:45236540..45236577,-!p1@SIX2!1.37!22.69!SIX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.35!36.08!CREB3L1;;chr5:134369879..134369898,-!p2@PITX1!1.35!21.58!PITX1;;chr1:170632477..170632506,+!p6@PRRX1!1.34!20.83!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.44!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.32!20.09!EBF3;;chr14:24837368..24837401,+!p1@NFATC4!1.28!42.41!NFATC4;;chr6:1312325..1312340,+!p1@FOXQ1!1.21!24.55!FOXQ1;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.87!TWIST2;;chr1:170633058..170633084,+!p5@PRRX1!1.20!14.88!PRRX1;;chr6:45296048..45296082,+!p1@RUNX2!1.19!16.74!RUNX2;;chr7:15726176..15726191,-!p3@MEOX2!1.18!14.14!MEOX2;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.92!TBX18;;chr12:54380404..54380433,+!p3@HOXC10!1.17!13.76!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.17!13.76!HOXC5;;chr7:15725757..15725828,-!p5@MEOX2!1.16!13.39!MEOX2;;chr1:170632250..170632277,+!p7@PRRX1!1.16!13.39!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.16!13.39!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.15!22.69!TWIST2;;chr8:25902876..25902936,-!p1@EBF2!1.14!12.65!EBF2;;chr19:13136241..13136258,+!p7@NFIX!1.13!16.74!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!1.12!12.28!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.09!252.21!AEBP1;;chr4:26322267..26322334,+!p3@RBPJ!1.08!26.78!RBPJ;;chr3:157823517..157823562,-!p1@SHOX2!1.07!11.53!SHOX2;;chr7:15726220..15726236,-!p4@MEOX2!1.07!10.79!MEOX2;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.79!HOXC9;;chr5:321810..321877,+!p1@AHRR!1.06!33.48!AHRR;;chr12:54402745..54402788,+!p1@HOXC8!1.04!10.04!HOXC8;;chr2:102091144..102091183,-!p2@RFX8!1.04!10.04!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!1.04!10.04!HOXD8;;chr7:19157043..19157088,-!p2@TWIST1!1.03!24.92!TWIST1;;chr1:170632439..170632465,+!p11@PRRX1!1.03!9.67!PRRX1;;chr10:28032421..28032494,-!p2@MKX!1.01!9.30!MKX;;chr19:13135582..13135600,+!p3@NFIX!1.00!8.93!NFIX;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.93!KDM5D;;chr7:15726206..15726217,-!p6@MEOX2!0.98!8.56!MEOX2;;chr12:54378923..54378966,+!p1@HOXC10!0.98!8.56!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.56!HOXC10;;chr19:13136130..13136165,+!p6@NFIX!0.97!11.16!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.96!192.69!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.93!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.96!8.18!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!0.95!11.16!FOXF2;;chr10:31610110..31610159,+!p2@ZEB1!0.95!7.81!ZEB1;;chr12:53614115..53614154,-!p1@RARG!0.93!41.29!RARG;;chr14:62203595..62203676,+!p4@HIF1A!0.93!14.51!HIF1A;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.30!BNC2;;chr7:15726064..15726103,-!p8@MEOX2!0.93!7.44!MEOX2;;chr1:170632762..170632786,+!p13@PRRX1!0.93!7.44!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.92!155.49!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.65!DRAP1;;chr20:51588873..51588953,+!p1@TSHZ2!0.90!9.30!TSHZ2;;chr14:61116168..61116180,-!p2@SIX1!0.89!7.81!SIX1;;chr4:26323870..26323885,+!p13@RBPJ!0.89!6.70!RBPJ;;chr1:170633194..170633205,+!p18@PRRX1!0.89!6.70!PRRX1;;chr20:39317868..39317884,-!p1@MAFB!0.86!79.23!MAFB;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.04!SNAI2;;chr2:102091566..102091581,-!p1@RFX8!0.86!6.32!RFX8;;chr4:26323764..26323821,+!p15@RBPJ!0.86!6.32!RBPJ;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.53!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.85!11.53!AEBP1;;chr10:31607702..31607755,+!p3@ZEB1!0.85!7.07!ZEB1;;chr10:28035133..28035148,-!p3@MKX!0.84!5.95!MKX;;chr12:54378984..54378996,+!p7@HOXC10!0.84!5.95!HOXC10;;chr7:15725973..15725985,-!p10@MEOX2!0.84!5.95!MEOX2;;chr7:15725992..15726043,-!p7@MEOX2!0.84!5.95!MEOX2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.83!62.50!GLIS2;;chr7:42276787..42276815,-!p1@GLI3!0.82!16.00!GLI3;;chr5:158526917..158526932,-!p1@EBF1!0.82!14.88!EBF1;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.58!HOXA10;;chr1:170632310..170632321,+!p15@PRRX1!0.82!5.58!PRRX1;;chr1:170632325..170632339,+!p24@PRRX1!0.82!5.58!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.82!5.58!KLF17;;chr2:45236579..45236596,-!p2@SIX2!0.82!5.58!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.82!5.58!CREB3L1;;chr19:58373157..58373159,+!p4@ZNF587!0.81!10.42!ZNF587;;chr3:21792585..21792625,-!p2@ZNF385D!0.80!5.95!ZNF385D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.79!5.58!GLIS1;;chr1:170633245..170633256,+!p14@PRRX1!0.79!5.21!PRRX1;;chr10:31607811..31607837,+!p6@ZEB1!0.79!5.21!ZEB1;;chr7:27205106..27205134,-!p2@HOXA9!0.79!5.21!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.79!5.21!HOXA9;;chr3:21792682..21792720,-!p1@ZNF385D!0.79!5.21!ZNF385D;;chr14:62213827..62213853,+!p6@HIF1A!0.78!7.44!HIF1A;;chr8:72756637..72756664,-!p3@MSC!0.77!5.58!MSC;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.84!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.77!4.84!PRRX1;;chr16:54320617..54320643,-!p3@IRX3!0.76!6.32!IRX3;;chr1:23696308..23696339,-!p2@ZNF436!0.75!10.42!ZNF436;;chr14:62203749..62203798,+!p5@HIF1A!0.75!7.44!HIF1A;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.25!TBX2;;chr5:139487608..139487663,+!p3@PURA!0.74!10.42!PURA;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.95!AEBP1;;chr14:62213758..62213774,+!p8@HIF1A!0.74!5.95!HIF1A;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.18!NFIX;;chr8:72756267..72756296,-!p4@MSC!0.73!6.70!MSC;;chr7:14028488..14028516,-!p2@ETV1!0.73!4.84!ETV1;;chr8:116681409..116681431,-!p2@TRPS1!0.72!12.65!TRPS1;;chr18:19749386..19749404,+!p2@GATA6!0.72!6.32!GATA6;;chr11:46299186..46299195,+!p3@CREB3L1!0.72!4.84!CREB3L1;;chr14:62162258..62162269,+!p2@HIF1A!0.71!44.64!HIF1A;;chr18:19749541..19749557,+!p1@GATA6!0.71!14.14!GATA6;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.09!CREB3L1;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.09!HOXA7;;chr2:176969097..176969109,+!p3@HOXD11!0.71!4.09!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.71!4.09!HOXD9;;chr4:26322673..26322684,+!p11@RBPJ!0.71!4.09!RBPJ;;chrY:2803415..2803468,+!p1@ZFY!0.71!4.09!ZFY;;chr5:133450365..133450444,+!p1@TCF7!0.70!20.46!TCF7;;chr2:46602901..46602926,+!p7@EPAS1!0.70!5.58!EPAS1;;chr11:65687362..65687436,+!p3@DRAP1!0.69!20.09!DRAP1;;chr8:72756213..72756243,-!p5@MSC!0.69!5.21!MSC;;chr7:14029283..14029311,-!p1@ETV1!0.68!23.06!ETV1;;chr19:44037546..44037594,+!p1@ZNF575!0.68!8.56!ZNF575;;chr4:26322373..26322393,+!p4@RBPJ!0.68!5.95!RBPJ;;chr6:144329384..144329405,-!p1@PLAGL1!0.67!49.85!PLAGL1;;chr18:22932080..22932170,-!p1@ZNF521!0.67!17.86!ZNF521;;chr19:46272106..46272115,-!p3@SIX5!0.67!11.16!SIX5;;chr12:53625966..53626012,-!p2@RARG!0.67!10.79!RARG;;chr14:89628064..89628109,-!p4@FOXN3!0.67!8.18!FOXN3;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.72!TCF12;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.72!ZNF668;;chr12:54379745..54379749,+!p6@HOXC5!0.67!3.72!HOXC5;;chr12:54394309..54394336,+!p2@HOXC9!0.67!3.72!HOXC9;;chr14:37131058..37131139,+!p1@PAX9!0.67!3.72!PAX9;;chr7:15725581..15725587,-!p13@MEOX2!0.67!3.72!MEOX2;;chr1:119530493..119530572,-!p1@TBX15!0.67!3.72!TBX15;;chr20:51589133..51589159,+!p2@TSHZ2!0.67!3.72!TSHZ2;;chr2:177001290..177001315,+!p1@HOXD3!0.67!3.72!HOXD3;;chr14:62162285..62162296,+!p3@HIF1A!0.66!21.20!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.66!15.62!FOSL1;;chr17:1959369..1959388,+!p2@HIC1!0.66!10.42!HIC1;;chr12:48298765..48298783,-!p2@VDR!0.66!8.18!VDR;;chr7:137564372..137564394,-!p7@CREB3L2!0.66!6.32!CREB3L2;;chr6:144289132..144289134,-!p3@PLAGL1!0.65!8.93!PLAGL1;;chr8:72756667..72756736,-!p2@MSC!0.64!5.58!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.35!SHOX2;;chr3:21792790..21792824,-!p4@ZNF385D!0.64!3.35!ZNF385D;;chr4:174450089..174450153,-!p2@HAND2!0.64!3.35!HAND2;;chr9:16727978..16728010,-!p6@BNC2!0.64!3.35!BNC2;;chr10:131635619..131635623,-!p6@EBF3!0.64!3.35!EBF3;;chr11:34642612..34642646,+!p1@EHF!0.64!3.35!EHF;;chr1:170632115..170632136,+!p9@PRRX1!0.64!3.35!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.64!3.35!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.64!3.35!PRRX1;;chr10:31608127..31608156,+!p1@ZEB1!0.63!72.17!ZEB1;;chr12:27485762..27485776,+!p3@ARNTL2!0.63!10.04!ARNTL2;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.63!5.95!MEIS3P1;;chr10:77161650..77161661,-!p4@ZNF503!0.63!4.84!ZNF503;;chr19:45260775..45260838,+!p5@BCL3!0.63!4.46!BCL3;;chr9:14307229..14307286,-!p10@NFIB!0.63!3.72!NFIB;;chr2:191878874..191878938,-!p1@STAT1!0.62!204.97!STAT1;;chr18:3451646..3451691,+!p3@TGIF1!0.62!9.67!TGIF1;;chr19:31840313..31840380,-!p1@TSHZ3!0.62!9.30!TSHZ3;;chr16:54320646..54320672,-!p2@IRX3!0.62!5.21!IRX3;;chr2:28615716..28615733,+!p1@FOSL2!0.61!174.84!FOSL2;;chr15:42743341..42743377,-!p3@ZFP106!0.61!5.58!ZFP106;;chr10:63809013..63809041,+!p3@ARID5B!0.60!19.72!ARID5B;;chr8:77593474..77593612,+!p1@ZFHX4!0.60!14.88!ZFHX4;;chr12:10875658..10875708,-!p2@CSDA!0.60!7.81!CSDA;;chr19:45261992..45262010,+!p9@BCL3!0.60!4.46!BCL3;;chr1:119530636..119530653,-!p2@TBX15!0.60!2.98!TBX15;;chr1:170632907..170632916,+!p22@PRRX1!0.60!2.98!PRRX1;;chr1:170633021..170633028,+!p27@PRRX1!0.60!2.98!PRRX1;;chr20:51589402..51589423,+!p6@TSHZ2!0.60!2.98!TSHZ2;;chr5:134369848..134369853,-!p6@PITX1!0.60!2.98!PITX1;;chr3:42695180..42695201,+!p2@ZBTB47!0.60!2.98!ZBTB47;;chr4:26324474..26324501,+!p16@RBPJ!0.60!2.98!RBPJ;;chr10:131762410..131762436,-!p2@EBF3!0.60!2.98!EBF3;;chr12:66357214..66357233,+!p13@HMGA2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| |expression_enrichment_score=chr7:15726296..15726315,-!p1@MEOX2!1.97!92.63!MEOX2;;chr1:170632285..170632309,+!p1@PRRX1!1.93!95.60!PRRX1;;chr10:28034739..28034756,-!p1@MKX!1.92!82.95!MKX;;chr9:132427883..132427951,+!p2@PRRX2!1.86!71.80!PRRX2;;chr19:13134772..13134822,+!p2@NFIX!1.81!91.14!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!1.74!70.31!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.66!45.01!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.59!51.34!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.56!57.66!TCF12;;chr7:15726243..15726293,-!p2@MEOX2!1.53!33.11!MEOX2;;chr2:19558373..19558392,-!p1@OSR1!1.52!85.93!OSR1;;chr5:134369905..134369972,-!p1@PITX1!1.52!48.73!PITX1;;chr7:19157248..19157268,-!p1@TWIST1!1.51!85.19!TWIST1;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!148.80!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.39!86.30!SIX1;;chr2:45236540..45236577,-!p1@SIX2!1.37!22.69!SIX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.35!36.08!CREB3L1;;chr5:134369879..134369898,-!p2@PITX1!1.35!21.58!PITX1;;chr1:170632477..170632506,+!p6@PRRX1!1.34!20.83!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!1.33!23.44!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.32!20.09!EBF3;;chr14:24837368..24837401,+!p1@NFATC4!1.28!42.41!NFATC4;;chr6:1312325..1312340,+!p1@FOXQ1!1.21!24.55!FOXQ1;;chr2:239756671..239756732,+!p1@TWIST2!1.20!46.87!TWIST2;;chr1:170633058..170633084,+!p5@PRRX1!1.20!14.88!PRRX1;;chr6:45296048..45296082,+!p1@RUNX2!1.19!16.74!RUNX2;;chr7:15726176..15726191,-!p3@MEOX2!1.18!14.14!MEOX2;;chr6:85474299..85474324,-!p1@TBX18!1.17!24.92!TBX18;;chr12:54380404..54380433,+!p3@HOXC10!1.17!13.76!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.17!13.76!HOXC5;;chr7:15725757..15725828,-!p5@MEOX2!1.16!13.39!MEOX2;;chr1:170632250..170632277,+!p7@PRRX1!1.16!13.39!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!1.16!13.39!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.15!22.69!TWIST2;;chr8:25902876..25902936,-!p1@EBF2!1.14!12.65!EBF2;;chr19:13136241..13136258,+!p7@NFIX!1.13!16.74!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!1.12!12.28!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!1.09!252.21!AEBP1;;chr4:26322267..26322334,+!p3@RBPJ!1.08!26.78!RBPJ;;chr3:157823517..157823562,-!p1@SHOX2!1.07!11.53!SHOX2;;chr7:15726220..15726236,-!p4@MEOX2!1.07!10.79!MEOX2;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.79!HOXC9;;chr5:321810..321877,+!p1@AHRR!1.06!33.48!AHRR;;chr12:54402745..54402788,+!p1@HOXC8!1.04!10.04!HOXC8;;chr2:102091144..102091183,-!p2@RFX8!1.04!10.04!RFX8;;chr2:176994408..176994492,+!p1@HOXD8!1.04!10.04!HOXD8;;chr7:19157043..19157088,-!p2@TWIST1!1.03!24.92!TWIST1;;chr1:170632439..170632465,+!p11@PRRX1!1.03!9.67!PRRX1;;chr10:28032421..28032494,-!p2@MKX!1.01!9.30!MKX;;chr19:13135582..13135600,+!p3@NFIX!1.00!8.93!NFIX;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.93!KDM5D;;chr7:15726206..15726217,-!p6@MEOX2!0.98!8.56!MEOX2;;chr12:54378923..54378966,+!p1@HOXC10!0.98!8.56!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.56!HOXC10;;chr19:13136130..13136165,+!p6@NFIX!0.97!11.16!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.96!192.69!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.93!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.96!8.18!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!0.95!11.16!FOXF2;;chr10:31610110..31610159,+!p2@ZEB1!0.95!7.81!ZEB1;;chr12:53614115..53614154,-!p1@RARG!0.93!41.29!RARG;;chr14:62203595..62203676,+!p4@HIF1A!0.93!14.51!HIF1A;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.30!BNC2;;chr7:15726064..15726103,-!p8@MEOX2!0.93!7.44!MEOX2;;chr1:170632762..170632786,+!p13@PRRX1!0.93!7.44!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!0.92!155.49!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.65!DRAP1;;chr20:51588873..51588953,+!p1@TSHZ2!0.90!9.30!TSHZ2;;chr14:61116168..61116180,-!p2@SIX1!0.89!7.81!SIX1;;chr4:26323870..26323885,+!p13@RBPJ!0.89!6.70!RBPJ;;chr1:170633194..170633205,+!p18@PRRX1!0.89!6.70!PRRX1;;chr20:39317868..39317884,-!p1@MAFB!0.86!79.23!MAFB;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.04!SNAI2;;chr2:102091566..102091581,-!p1@RFX8!0.86!6.32!RFX8;;chr4:26323764..26323821,+!p15@RBPJ!0.86!6.32!RBPJ;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.53!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.85!11.53!AEBP1;;chr10:31607702..31607755,+!p3@ZEB1!0.85!7.07!ZEB1;;chr10:28035133..28035148,-!p3@MKX!0.84!5.95!MKX;;chr12:54378984..54378996,+!p7@HOXC10!0.84!5.95!HOXC10;;chr7:15725973..15725985,-!p10@MEOX2!0.84!5.95!MEOX2;;chr7:15725992..15726043,-!p7@MEOX2!0.84!5.95!MEOX2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.83!62.50!GLIS2;;chr7:42276787..42276815,-!p1@GLI3!0.82!16.00!GLI3;;chr5:158526917..158526932,-!p1@EBF1!0.82!14.88!EBF1;;chr7:27213893..27213954,-!p1@HOXA10!0.82!5.58!HOXA10;;chr1:170632310..170632321,+!p15@PRRX1!0.82!5.58!PRRX1;;chr1:170632325..170632339,+!p24@PRRX1!0.82!5.58!PRRX1;;chr1:44513995..44514031,+!p1@KLF17!0.82!5.58!KLF17;;chr2:45236579..45236596,-!p2@SIX2!0.82!5.58!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.82!5.58!CREB3L1;;chr19:58373157..58373159,+!p4@ZNF587!0.81!10.42!ZNF587;;chr3:21792585..21792625,-!p2@ZNF385D!0.80!5.95!ZNF385D;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.79!5.58!GLIS1;;chr1:170633245..170633256,+!p14@PRRX1!0.79!5.21!PRRX1;;chr10:31607811..31607837,+!p6@ZEB1!0.79!5.21!ZEB1;;chr7:27205106..27205134,-!p2@HOXA9!0.79!5.21!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.79!5.21!HOXA9;;chr3:21792682..21792720,-!p1@ZNF385D!0.79!5.21!ZNF385D;;chr14:62213827..62213853,+!p6@HIF1A!0.78!7.44!HIF1A;;chr8:72756637..72756664,-!p3@MSC!0.77!5.58!MSC;;chr1:170632137..170632172,+!p10@PRRX1!0.77!4.84!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.77!4.84!PRRX1;;chr16:54320617..54320643,-!p3@IRX3!0.76!6.32!IRX3;;chr1:23696308..23696339,-!p2@ZNF436!0.75!10.42!ZNF436;;chr14:62203749..62203798,+!p5@HIF1A!0.75!7.44!HIF1A;;chr17:59477233..59477263,+!p1@TBX2!0.74!15.25!TBX2;;chr5:139487608..139487663,+!p3@PURA!0.74!10.42!PURA;;chr7:44143997..44144008,+!p3@AEBP1!0.74!5.95!AEBP1;;chr14:62213758..62213774,+!p8@HIF1A!0.74!5.95!HIF1A;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.18!NFIX;;chr8:72756267..72756296,-!p4@MSC!0.73!6.70!MSC;;chr7:14028488..14028516,-!p2@ETV1!0.73!4.84!ETV1;;chr8:116681409..116681431,-!p2@TRPS1!0.72!12.65!TRPS1;;chr18:19749386..19749404,+!p2@GATA6!0.72!6.32!GATA6;;chr11:46299186..46299195,+!p3@CREB3L1!0.72!4.84!CREB3L1;;chr14:62162258..62162269,+!p2@HIF1A!0.71!44.64!HIF1A;;chr18:19749541..19749557,+!p1@GATA6!0.71!14.14!GATA6;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.09!CREB3L1;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.09!HOXA7;;chr2:176969097..176969109,+!p3@HOXD11!0.71!4.09!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.71!4.09!HOXD9;;chr4:26322673..26322684,+!p11@RBPJ!0.71!4.09!RBPJ;;chrY:2803415..2803468,+!p1@ZFY!0.71!4.09!ZFY;;chr5:133450365..133450444,+!p1@TCF7!0.70!20.46!TCF7;;chr2:46602901..46602926,+!p7@EPAS1!0.70!5.58!EPAS1;;chr11:65687362..65687436,+!p3@DRAP1!0.69!20.09!DRAP1;;chr8:72756213..72756243,-!p5@MSC!0.69!5.21!MSC;;chr7:14029283..14029311,-!p1@ETV1!0.68!23.06!ETV1;;chr19:44037546..44037594,+!p1@ZNF575!0.68!8.56!ZNF575;;chr4:26322373..26322393,+!p4@RBPJ!0.68!5.95!RBPJ;;chr6:144329384..144329405,-!p1@PLAGL1!0.67!49.85!PLAGL1;;chr18:22932080..22932170,-!p1@ZNF521!0.67!17.86!ZNF521;;chr19:46272106..46272115,-!p3@SIX5!0.67!11.16!SIX5;;chr12:53625966..53626012,-!p2@RARG!0.67!10.79!RARG;;chr14:89628064..89628109,-!p4@FOXN3!0.67!8.18!FOXN3;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.72!TCF12;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.72!ZNF668;;chr12:54379745..54379749,+!p6@HOXC5!0.67!3.72!HOXC5;;chr12:54394309..54394336,+!p2@HOXC9!0.67!3.72!HOXC9;;chr14:37131058..37131139,+!p1@PAX9!0.67!3.72!PAX9;;chr7:15725581..15725587,-!p13@MEOX2!0.67!3.72!MEOX2;;chr1:119530493..119530572,-!p1@TBX15!0.67!3.72!TBX15;;chr20:51589133..51589159,+!p2@TSHZ2!0.67!3.72!TSHZ2;;chr2:177001290..177001315,+!p1@HOXD3!0.67!3.72!HOXD3;;chr14:62162285..62162296,+!p3@HIF1A!0.66!21.20!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.66!15.62!FOSL1;;chr17:1959369..1959388,+!p2@HIC1!0.66!10.42!HIC1;;chr12:48298765..48298783,-!p2@VDR!0.66!8.18!VDR;;chr7:137564372..137564394,-!p7@CREB3L2!0.66!6.32!CREB3L2;;chr6:144289132..144289134,-!p3@PLAGL1!0.65!8.93!PLAGL1;;chr8:72756667..72756736,-!p2@MSC!0.64!5.58!MSC;;chr3:157824001..157824078,-!p2@SHOX2!0.64!3.35!SHOX2;;chr3:21792790..21792824,-!p4@ZNF385D!0.64!3.35!ZNF385D;;chr4:174450089..174450153,-!p2@HAND2!0.64!3.35!HAND2;;chr9:16727978..16728010,-!p6@BNC2!0.64!3.35!BNC2;;chr10:131635619..131635623,-!p6@EBF3!0.64!3.35!EBF3;;chr11:34642612..34642646,+!p1@EHF!0.64!3.35!EHF;;chr1:170632115..170632136,+!p9@PRRX1!0.64!3.35!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.64!3.35!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.64!3.35!PRRX1;;chr10:31608127..31608156,+!p1@ZEB1!0.63!72.17!ZEB1;;chr12:27485762..27485776,+!p3@ARNTL2!0.63!10.04!ARNTL2;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.63!5.95!MEIS3P1;;chr10:77161650..77161661,-!p4@ZNF503!0.63!4.84!ZNF503;;chr19:45260775..45260838,+!p5@BCL3!0.63!4.46!BCL3;;chr9:14307229..14307286,-!p10@NFIB!0.63!3.72!NFIB;;chr2:191878874..191878938,-!p1@STAT1!0.62!204.97!STAT1;;chr18:3451646..3451691,+!p3@TGIF1!0.62!9.67!TGIF1;;chr19:31840313..31840380,-!p1@TSHZ3!0.62!9.30!TSHZ3;;chr16:54320646..54320672,-!p2@IRX3!0.62!5.21!IRX3;;chr2:28615716..28615733,+!p1@FOSL2!0.61!174.84!FOSL2;;chr15:42743341..42743377,-!p3@ZFP106!0.61!5.58!ZFP106;;chr10:63809013..63809041,+!p3@ARID5B!0.60!19.72!ARID5B;;chr8:77593474..77593612,+!p1@ZFHX4!0.60!14.88!ZFHX4;;chr12:10875658..10875708,-!p2@CSDA!0.60!7.81!CSDA;;chr19:45261992..45262010,+!p9@BCL3!0.60!4.46!BCL3;;chr1:119530636..119530653,-!p2@TBX15!0.60!2.98!TBX15;;chr1:170632907..170632916,+!p22@PRRX1!0.60!2.98!PRRX1;;chr1:170633021..170633028,+!p27@PRRX1!0.60!2.98!PRRX1;;chr20:51589402..51589423,+!p6@TSHZ2!0.60!2.98!TSHZ2;;chr5:134369848..134369853,-!p6@PITX1!0.60!2.98!PITX1;;chr3:42695180..42695201,+!p2@ZBTB47!0.60!2.98!ZBTB47;;chr4:26324474..26324501,+!p16@RBPJ!0.60!2.98!RBPJ;;chr10:131762410..131762436,-!p2@EBF3!0.60!2.98!EBF3;;chr12:66357214..66357233,+!p13@HMGA2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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000388;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/tenocyte%252c%2520donor1.CNhs12639.11763-123H8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11763-123H8 | |id=FF:11763-123H8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000280 | ||
|is_obsolete= | |||
|library_id=CNhs12639 | |||
|library_id_phase_based=2:CNhs12639 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11763 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11763 | |||
|name=tenocyte, donor1 | |name=tenocyte, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12639,LSID952,release012,COMPLETED | |profile_hcage=CNhs12639,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=45.24675 | |rna_weight_ug=45.24675 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 100: | ||
|sample_tissue=tendon | |sample_tissue=tendon | ||
|top_motifs=UFEwm:2.95529478579;ALX4:2.75550724581;NKX2-2,8:2.53214992808;EVI1:2.45298982908;TAL1_TCF{3,4,12}:2.39713680922;HMGA1,2:2.28822733837;PAX1,9:2.17303600129;ESR1:2.1303696505;EN1,2:2.07138233052;HES1:1.84206049341;MYBL2:1.81027102434;ZNF238:1.79375227106;NR6A1:1.73292876389;GLI1..3:1.63657061507;XBP1:1.62268909658;RXRA_VDR{dimer}:1.52852089282;GZF1:1.49272566581;RXR{A,B,G}:1.47118943063;FOXL1:1.44050559278;HOX{A4,D4}:1.28575751689;NKX3-1:1.27980345962;GCM1,2:1.25871389061;TFCP2:1.24751163861;KLF4:1.21227773623;ATF6:1.19990886225;EBF1:1.18757550029;CDC5L:1.18192799756;NANOG{mouse}:1.16827180831;DBP:1.16827178617;ZNF423:1.15728423013;GFI1B:1.04877539054;NR3C1:0.971073429831;SPZ1:0.963954172314;HOX{A5,B5}:0.939253584615;HAND1,2:0.938046044608;GATA4:0.931935934757;TP53:0.930612074574;NFATC1..3:0.892742512238;TFAP4:0.885654271457;NKX3-2:0.836185815423;GTF2I:0.823488364284;AIRE:0.819710522277;ARID5B:0.807897305548;SMAD1..7,9:0.797705599743;TEAD1:0.786918779101;ZIC1..3:0.786716196149;PAX4:0.782690047611;MTF1:0.777880447019;ZNF384:0.771821422021;NR1H4:0.742185004754;GTF2A1,2:0.73759137932;FOXO1,3,4:0.73527335287;HMX1:0.734316409137;TFAP2{A,C}:0.700805904995;NFE2L1:0.675114187683;TEF:0.655863118375;HSF1,2:0.60875704639;YY1:0.59701860011;POU3F1..4:0.588413151391;MAFB:0.588082942966;PAX5:0.538538078631;RREB1:0.512249137747;MZF1:0.502201580459;PATZ1:0.49245330635;ZBTB6:0.480056027864;STAT2,4,6:0.477006888888;MTE{core}:0.4757786656;TBP:0.458397470079;MYB:0.456149906658;IRF1,2:0.44849940339;SRF:0.441846602074;TLX1..3_NFIC{dimer}:0.439386735596;PRDM1:0.400389099165;XCPE1{core}:0.378157218047;LHX3,4:0.368144932692;IKZF1:0.343697935299;CDX1,2,4:0.321723452355;NFE2L2:0.312116901124;HIC1:0.282617332623;PAX8:0.255143124445;SOX17:0.21445416935;LMO2:0.19251458348;MAZ:0.175793426518;HLF:0.173200837;ZNF148:0.168665873468;TFAP2B:0.165550914663;ZBTB16:0.157434139342;PPARG:0.113404666526;REST:0.108718186038;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.105465854018;POU6F1:0.0981819012594;FOXD3:0.0664781520215;EP300:0.00820250155585;AR:-0.0159922627452;VSX1,2:-0.0220470078285;MYFfamily:-0.0254629613012;HOX{A6,A7,B6,B7}:-0.0321999431482;HNF1A:-0.0490771001502;GFI1:-0.0618377171411;DMAP1_NCOR{1,2}_SMARC:-0.0677704528432;NHLH1,2:-0.0795438923995;POU5F1:-0.0993539813279;IRF7:-0.106674136773;BACH2:-0.111542485088;HBP1_HMGB_SSRP1_UBTF:-0.13364779149;RUNX1..3:-0.138985530804;TFDP1:-0.15108976255;TOPORS:-0.172826336341;ZNF143:-0.227159027079;BPTF:-0.242173017641;E2F1..5:-0.25103271045;EGR1..3:-0.25157256502;HOXA9_MEIS1:-0.271259109552;FOS_FOS{B,L1}_JUN{B,D}:-0.297768123586;FOXM1:-0.298266630469;NKX2-3_NKX2-5:-0.30864996858;NFIX:-0.324426606593;MED-1{core}:-0.325865352121;STAT1,3:-0.329261710998;NFKB1_REL_RELA:-0.337988879958;HNF4A_NR2F1,2:-0.34167631142;TBX4,5:-0.34519282915;PAX3,7:-0.353996658699;NR5A1,2:-0.366403476823;ONECUT1,2:-0.376891696794;ZFP161:-0.377688433601;MEF2{A,B,C,D}:-0.394891487933;bHLH_family:-0.396722257823;NRF1:-0.401269216148;FOXP3:-0.420033748176;PITX1..3:-0.435926965491;LEF1_TCF7_TCF7L1,2:-0.460929062227;SP1:-0.465577515066;NKX2-1,4:-0.499563363465;SNAI1..3:-0.525428940661;RFX1:-0.536216547142;FOSL2:-0.608267026416;FOX{D1,D2}:-0.631106786897;CEBPA,B_DDIT3:-0.657552241118;STAT5{A,B}:-0.671093870174;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672828338656;FOXA2:-0.681340669687;BREu{core}:-0.685890534083;HIF1A:-0.690636137352;NKX6-1,2:-0.702689726499;NFIL3:-0.70335311354;IKZF2:-0.705826806088;NFE2:-0.72597200736;SPI1:-0.7303298163;SPIB:-0.741199901337;JUN:-0.781292402635;FOXN1:-0.784056334841;CREB1:-0.792010517223;ELK1,4_GABP{A,B1}:-0.79406426955;SOX5:-0.796939162409;PBX1:-0.801825557564;TLX2:-0.806912131298;AHR_ARNT_ARNT2:-0.818165522782;SOX{8,9,10}:-0.835988280985;ETS1,2:-0.850940137175;PAX2:-0.861666709867;SOX2:-0.864725894299;FOXP1:-0.920965237883;ESRRA:-0.940709974274;ADNP_IRX_SIX_ZHX:-0.955750539365;RFX2..5_RFXANK_RFXAP:-0.961653147071;SREBF1,2:-0.987396739855;ATF4:-0.993643611555;NFY{A,B,C}:-1.02194443297;POU1F1:-1.0393968869;TGIF1:-1.10874675304;POU2F1..3:-1.12233792029;ZEB1:-1.14833963058;FOX{I1,J2}:-1.17894569113;ELF1,2,4:-1.18820710531;PRRX1,2:-1.20954320863;PAX6:-1.21505688006;ATF5_CREB3:-1.22278191604;OCT4_SOX2{dimer}:-1.23946112031;ALX1:-1.28345790781;GATA6:-1.31349922375;RBPJ:-1.32147132114;CUX2:-1.32605460367;T:-1.40576397651;PDX1:-1.52974574447;FOX{F1,F2,J1}:-1.56696631607;ATF2:-1.5751939868;CRX:-1.576535295;MYOD1:-1.5868544728;NANOG:-1.877266695;RORA:-1.88838939154;FOXQ1:-2.01061907811 | |top_motifs=UFEwm:2.95529478579;ALX4:2.75550724581;NKX2-2,8:2.53214992808;EVI1:2.45298982908;TAL1_TCF{3,4,12}:2.39713680922;HMGA1,2:2.28822733837;PAX1,9:2.17303600129;ESR1:2.1303696505;EN1,2:2.07138233052;HES1:1.84206049341;MYBL2:1.81027102434;ZNF238:1.79375227106;NR6A1:1.73292876389;GLI1..3:1.63657061507;XBP1:1.62268909658;RXRA_VDR{dimer}:1.52852089282;GZF1:1.49272566581;RXR{A,B,G}:1.47118943063;FOXL1:1.44050559278;HOX{A4,D4}:1.28575751689;NKX3-1:1.27980345962;GCM1,2:1.25871389061;TFCP2:1.24751163861;KLF4:1.21227773623;ATF6:1.19990886225;EBF1:1.18757550029;CDC5L:1.18192799756;NANOG{mouse}:1.16827180831;DBP:1.16827178617;ZNF423:1.15728423013;GFI1B:1.04877539054;NR3C1:0.971073429831;SPZ1:0.963954172314;HOX{A5,B5}:0.939253584615;HAND1,2:0.938046044608;GATA4:0.931935934757;TP53:0.930612074574;NFATC1..3:0.892742512238;TFAP4:0.885654271457;NKX3-2:0.836185815423;GTF2I:0.823488364284;AIRE:0.819710522277;ARID5B:0.807897305548;SMAD1..7,9:0.797705599743;TEAD1:0.786918779101;ZIC1..3:0.786716196149;PAX4:0.782690047611;MTF1:0.777880447019;ZNF384:0.771821422021;NR1H4:0.742185004754;GTF2A1,2:0.73759137932;FOXO1,3,4:0.73527335287;HMX1:0.734316409137;TFAP2{A,C}:0.700805904995;NFE2L1:0.675114187683;TEF:0.655863118375;HSF1,2:0.60875704639;YY1:0.59701860011;POU3F1..4:0.588413151391;MAFB:0.588082942966;PAX5:0.538538078631;RREB1:0.512249137747;MZF1:0.502201580459;PATZ1:0.49245330635;ZBTB6:0.480056027864;STAT2,4,6:0.477006888888;MTE{core}:0.4757786656;TBP:0.458397470079;MYB:0.456149906658;IRF1,2:0.44849940339;SRF:0.441846602074;TLX1..3_NFIC{dimer}:0.439386735596;PRDM1:0.400389099165;XCPE1{core}:0.378157218047;LHX3,4:0.368144932692;IKZF1:0.343697935299;CDX1,2,4:0.321723452355;NFE2L2:0.312116901124;HIC1:0.282617332623;PAX8:0.255143124445;SOX17:0.21445416935;LMO2:0.19251458348;MAZ:0.175793426518;HLF:0.173200837;ZNF148:0.168665873468;TFAP2B:0.165550914663;ZBTB16:0.157434139342;PPARG:0.113404666526;REST:0.108718186038;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.105465854018;POU6F1:0.0981819012594;FOXD3:0.0664781520215;EP300:0.00820250155585;AR:-0.0159922627452;VSX1,2:-0.0220470078285;MYFfamily:-0.0254629613012;HOX{A6,A7,B6,B7}:-0.0321999431482;HNF1A:-0.0490771001502;GFI1:-0.0618377171411;DMAP1_NCOR{1,2}_SMARC:-0.0677704528432;NHLH1,2:-0.0795438923995;POU5F1:-0.0993539813279;IRF7:-0.106674136773;BACH2:-0.111542485088;HBP1_HMGB_SSRP1_UBTF:-0.13364779149;RUNX1..3:-0.138985530804;TFDP1:-0.15108976255;TOPORS:-0.172826336341;ZNF143:-0.227159027079;BPTF:-0.242173017641;E2F1..5:-0.25103271045;EGR1..3:-0.25157256502;HOXA9_MEIS1:-0.271259109552;FOS_FOS{B,L1}_JUN{B,D}:-0.297768123586;FOXM1:-0.298266630469;NKX2-3_NKX2-5:-0.30864996858;NFIX:-0.324426606593;MED-1{core}:-0.325865352121;STAT1,3:-0.329261710998;NFKB1_REL_RELA:-0.337988879958;HNF4A_NR2F1,2:-0.34167631142;TBX4,5:-0.34519282915;PAX3,7:-0.353996658699;NR5A1,2:-0.366403476823;ONECUT1,2:-0.376891696794;ZFP161:-0.377688433601;MEF2{A,B,C,D}:-0.394891487933;bHLH_family:-0.396722257823;NRF1:-0.401269216148;FOXP3:-0.420033748176;PITX1..3:-0.435926965491;LEF1_TCF7_TCF7L1,2:-0.460929062227;SP1:-0.465577515066;NKX2-1,4:-0.499563363465;SNAI1..3:-0.525428940661;RFX1:-0.536216547142;FOSL2:-0.608267026416;FOX{D1,D2}:-0.631106786897;CEBPA,B_DDIT3:-0.657552241118;STAT5{A,B}:-0.671093870174;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.672828338656;FOXA2:-0.681340669687;BREu{core}:-0.685890534083;HIF1A:-0.690636137352;NKX6-1,2:-0.702689726499;NFIL3:-0.70335311354;IKZF2:-0.705826806088;NFE2:-0.72597200736;SPI1:-0.7303298163;SPIB:-0.741199901337;JUN:-0.781292402635;FOXN1:-0.784056334841;CREB1:-0.792010517223;ELK1,4_GABP{A,B1}:-0.79406426955;SOX5:-0.796939162409;PBX1:-0.801825557564;TLX2:-0.806912131298;AHR_ARNT_ARNT2:-0.818165522782;SOX{8,9,10}:-0.835988280985;ETS1,2:-0.850940137175;PAX2:-0.861666709867;SOX2:-0.864725894299;FOXP1:-0.920965237883;ESRRA:-0.940709974274;ADNP_IRX_SIX_ZHX:-0.955750539365;RFX2..5_RFXANK_RFXAP:-0.961653147071;SREBF1,2:-0.987396739855;ATF4:-0.993643611555;NFY{A,B,C}:-1.02194443297;POU1F1:-1.0393968869;TGIF1:-1.10874675304;POU2F1..3:-1.12233792029;ZEB1:-1.14833963058;FOX{I1,J2}:-1.17894569113;ELF1,2,4:-1.18820710531;PRRX1,2:-1.20954320863;PAX6:-1.21505688006;ATF5_CREB3:-1.22278191604;OCT4_SOX2{dimer}:-1.23946112031;ALX1:-1.28345790781;GATA6:-1.31349922375;RBPJ:-1.32147132114;CUX2:-1.32605460367;T:-1.40576397651;PDX1:-1.52974574447;FOX{F1,F2,J1}:-1.56696631607;ATF2:-1.5751939868;CRX:-1.576535295;MYOD1:-1.5868544728;NANOG:-1.877266695;RORA:-1.88838939154;FOXQ1:-2.01061907811 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11763-123H8;search_select_hide=table117:FF:11763-123H8 | |||
}} | }} | ||
Latest revision as of 18:18, 4 June 2020
| Name: | tenocyte, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12639 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12639
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12639
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.424 |
| 10 | 10 | 0.526 |
| 100 | 100 | 0.55 |
| 101 | 101 | 0.306 |
| 102 | 102 | 0.237 |
| 103 | 103 | 0.0777 |
| 104 | 104 | 0.804 |
| 105 | 105 | 0.114 |
| 106 | 106 | 0.225 |
| 107 | 107 | 0.0316 |
| 108 | 108 | 0.301 |
| 109 | 109 | 0.412 |
| 11 | 11 | 0.271 |
| 110 | 110 | 0.23 |
| 111 | 111 | 0.697 |
| 112 | 112 | 0.553 |
| 113 | 113 | 0.0174 |
| 114 | 114 | 0.188 |
| 115 | 115 | 0.0339 |
| 116 | 116 | 0.0586 |
| 117 | 117 | 0.985 |
| 118 | 118 | 0.932 |
| 119 | 119 | 0.626 |
| 12 | 12 | 0.235 |
| 120 | 120 | 0.652 |
| 121 | 121 | 0.48 |
| 122 | 122 | 0.0219 |
| 123 | 123 | 0.0165 |
| 124 | 124 | 0.718 |
| 125 | 125 | 0.686 |
| 126 | 126 | 0.864 |
| 127 | 127 | 0.822 |
| 128 | 128 | 0.0797 |
| 129 | 129 | 0.611 |
| 13 | 13 | 0.639 |
| 130 | 130 | 0.536 |
| 131 | 131 | 0.79 |
| 132 | 132 | 0.236 |
| 133 | 133 | 0.142 |
| 134 | 134 | 0.635 |
| 135 | 135 | 0.504 |
| 136 | 136 | 0.759 |
| 137 | 137 | 0.599 |
| 138 | 138 | 0.744 |
| 139 | 139 | 0.636 |
| 14 | 14 | 0.509 |
| 140 | 140 | 0.725 |
| 141 | 141 | 0.46 |
| 142 | 142 | 0.779 |
| 143 | 143 | 0.661 |
| 144 | 144 | 0.29 |
| 145 | 145 | 0.754 |
| 146 | 146 | 0.987 |
| 147 | 147 | 0.297 |
| 148 | 148 | 0.808 |
| 149 | 149 | 0.0169 |
| 15 | 15 | 0.786 |
| 150 | 150 | 0.215 |
| 151 | 151 | 0.486 |
| 152 | 152 | 0.132 |
| 153 | 153 | 0.986 |
| 154 | 154 | 0.846 |
| 155 | 155 | 0.2 |
| 156 | 156 | 0.532 |
| 157 | 157 | 0.349 |
| 158 | 158 | 0.0123 |
| 159 | 159 | 0.628 |
| 16 | 16 | 0.00627 |
| 160 | 160 | 0.351 |
| 161 | 161 | 0.938 |
| 162 | 162 | 0.245 |
| 163 | 163 | 0.871 |
| 164 | 164 | 0.142 |
| 165 | 165 | 0.841 |
| 166 | 166 | 0.0452 |
| 167 | 167 | 0.454 |
| 168 | 168 | 0.649 |
| 169 | 169 | 0.019 |
| 17 | 17 | 0.351 |
| 18 | 18 | 0.361 |
| 19 | 19 | 0.00191 |
| 2 | 2 | 0.2 |
| 20 | 20 | 0.333 |
| 21 | 21 | 0.0379 |
| 22 | 22 | 0.273 |
| 23 | 23 | 0.155 |
| 24 | 24 | 0.329 |
| 25 | 25 | 0.474 |
| 26 | 26 | 0.217 |
| 27 | 27 | 0.355 |
| 28 | 28 | 0.238 |
| 29 | 29 | 0.248 |
| 3 | 3 | 0.427 |
| 30 | 30 | 0.434 |
| 31 | 31 | 0.443 |
| 32 | 32 | 5.53423e-20 |
| 33 | 33 | 0.884 |
| 34 | 34 | 0.584 |
| 35 | 35 | 0.833 |
| 36 | 36 | 0.05 |
| 37 | 37 | 0.0973 |
| 38 | 38 | 0.912 |
| 39 | 39 | 0.268 |
| 4 | 4 | 0.833 |
| 40 | 40 | 0.229 |
| 41 | 41 | 0.282 |
| 42 | 42 | 0.75 |
| 43 | 43 | 0.426 |
| 44 | 44 | 0.067 |
| 45 | 45 | 0.733 |
| 46 | 46 | 0.161 |
| 47 | 47 | 0.912 |
| 48 | 48 | 0.79 |
| 49 | 49 | 0.962 |
| 5 | 5 | 0.996 |
| 50 | 50 | 0.532 |
| 51 | 51 | 0.642 |
| 52 | 52 | 0.583 |
| 53 | 53 | 0.191 |
| 54 | 54 | 0.651 |
| 55 | 55 | 0.423 |
| 56 | 56 | 0.791 |
| 57 | 57 | 0.97 |
| 58 | 58 | 0.45 |
| 59 | 59 | 0.0107 |
| 6 | 6 | 0.31 |
| 60 | 60 | 0.6 |
| 61 | 61 | 0.789 |
| 62 | 62 | 0.824 |
| 63 | 63 | 0.196 |
| 64 | 64 | 0.785 |
| 65 | 65 | 0.327 |
| 66 | 66 | 0.229 |
| 67 | 67 | 0.852 |
| 68 | 68 | 0.395 |
| 69 | 69 | 0.515 |
| 7 | 7 | 0.495 |
| 70 | 70 | 0.32 |
| 71 | 71 | 0.389 |
| 72 | 72 | 0.799 |
| 73 | 73 | 0.111 |
| 74 | 74 | 0.246 |
| 75 | 75 | 0.849 |
| 76 | 76 | 0.966 |
| 77 | 77 | 0.0389 |
| 78 | 78 | 0.544 |
| 79 | 79 | 5.70064e-5 |
| 8 | 8 | 0.0859 |
| 80 | 80 | 0.0945 |
| 81 | 81 | 0.391 |
| 82 | 82 | 0.433 |
| 83 | 83 | 0.298 |
| 84 | 84 | 0.311 |
| 85 | 85 | 0.258 |
| 86 | 86 | 0.489 |
| 87 | 87 | 0.273 |
| 88 | 88 | 0.42 |
| 89 | 89 | 0.0392 |
| 9 | 9 | 0.517 |
| 90 | 90 | 0.875 |
| 91 | 91 | 0.535 |
| 92 | 92 | 0.236 |
| 93 | 93 | 0.44 |
| 94 | 94 | 0.663 |
| 95 | 95 | 0.994 |
| 96 | 96 | 0.861 |
| 97 | 97 | 0.325 |
| 98 | 98 | 0.97 |
| 99 | 99 | 0.00177 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12639
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000280 human tenocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000630 (supportive cell)
0000135 (fibrocyte)
0000386 (attachment cell)
0000255 (eukaryotic cell)
0000388 (tendon cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0007846 (dense regular connective tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000043 (tendon)
0007845 (regular connective tissue)
0002204 (musculoskeletal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000280 (human tenocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
