FF:12226-129F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005671 | |||
|accession_numbers=CAGE;DRX008571;DRR009443;DRZ000868;DRZ002253;DRZ012218;DRZ013603!CAGE;DRX022802;DRR025141;DRZ003566;DRZ004449;DRZ008307;DRZ009190 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000197,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000710,CL:0000255,CL:0002077,CL:0000098,CL:0002167 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0104976 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor1%252c%2520tech_rep1.CNhs12589.12226-129F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor1%252c%2520tech_rep1.CNhs12589.12226-129F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/nasal%2520epithelial%2520cells%252c%2520donor1%252c%2520tech_rep1.CNhs12589.12226-129F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/nasal%2520epithelial%2520cells%252c%2520donor1%252c%2520tech_rep2.CNhs12554.12226-129F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/nasal%2520epithelial%2520cells%252c%2520donor1%252c%2520tech_rep2.CNhs12554.12226-129F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12226-129F3 | |id=FF:12226-129F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0104976 | ||
|is_obsolete= | |||
|library_id=CNhs12589!CNhs12554 | |||
|library_id_phase_based=2:CNhs12554 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12226 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12226 | |||
|name=nasal epithelial cells, donor1 | |name=nasal epithelial cells, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12589 & CNhs12554,LSID912,release012,COMPLETED | |profile_hcage=CNhs12589 & CNhs12554,LSID912,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.103459083923787,0.152177775803824,0.0216468506566261,0.0167147455195849,0,0,0,0,0,0,0,0,0,0,0.715701339812315,0.0568589461625992,0,-0.0461948126679924,0,0,0,0.418634434794847,0,-0.0979578962680575,0,0,-0.0258283920984271,0,0,0,0,0,0,0,0,0,0,0.264647151002274,0,0.065424194751727,0,0,0,0.0568589461625992,0,0,0,0,0.0293490777273832,0,0,0,0,0,-0.0313687832914187,0,-0.0969923612426051,0,0,-0.0404846810504978,0,0,0,0,0,0,0,0,0.152177775803824,0,0,0,0,0,0,0,0,-0.0305084478162523,0,0,0,0,0,0,-0.09646374523251,0,0,0,-0.0584468268118252,-0.0088938850738239,0,0,0,0,-0.0980353512377064,0.024591972997679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0428094950822433,0.107128197680435,0,0,0.0470633694926992,0.0403816945101511,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.243791233865454,0.0867798423630827,0,0,1.65768493819995e-05,0,0,0,0,0,0,0,0,0,0.796862711921507,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,0.0745209180094205,0,-0.0591105687062325,-0.0683442610773682,0,0,0,0,-0.0648611968610946,0,-0.0640205376311415,-0.0258612221608182,0,0.122762654586714,-0.0160587687275858,0,0,0,0.23405655533685,0.659044393120139,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.0140802677018033,0.054707750546407,0,-0.0687831420993664,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0305084478162523,0,0,0,0,0.0320004195941019,0,0,0.305846057055949,0.183557532479827,-0.0114633881605906,-0.0369033647308764,0,-0.302389727009913,-0.0132278493289658,0.0135267236219985,-0.0973483776576362,-0.147401849371139,0.163918279234013,0,-0.556121267975195,-0.634094853310188,-0.0117990583425775,0.0316137057121431,-0.0528532346465392,-0.0132243261323006,0.119655623434098,0,0.0568589461625992,0,0.633824720533539,0,0,0.176109943457707,0.115886383762438,-0.159128678354887,-0.0501349828806827,0.151862237879733,-0.046305876888842,-0.0395325284566706,-0.35030825521616,-0.0490075428196786,-0.157245611587575,0,0,0,-0.0496630101431688,-0.314867969254554,0.0370955258467822,0,-0.219330310808706,-0.0114853149147691,0,-0.284679521132663,-0.161641059321699,0.0568589461625992,0,-0.0876688163587933,0,0,0,0,0,-0.337609896654796,-0.24301199416745,-0.12572736387511,0,-0.157079361767483,0.0535640988402175,-0.0954819070810105,0,0.102175968267539,-0.0499929858069815,0.129826268888917,0.051707640153831,0,-0.0721118255494495,0.140607000641581,-0.108131750176404,-0.0177877701476478,-0.0584468268118252,-0.0147705939634165,-0.098002747255196,0.0746512387429765,-0.136018165764765,0,-0.0881268324752877,0,-0.776416552837945,0.16651832759083,0,-0.178068834303344,0,-0.145864483126193,0,-0.177287307289989,0,-0.24076778723765,0.0699441530218895,-0.246298974220801,0.073246858622015,0,-0.0638647470129924,-0.09646374523251,0.0641603504716384,0.231653705508773,-0.0261218128291665,0.879344616127816,-0.150367083334639,0.439944052081345,0.120366841241738,-0.0569958847576774,0,0.064511169128248,0,0,0.138531426542253,-0.128347840083954,0,0.0091060488969851,-0.0805494875811469,-0.041006694763801,0.0770193269249512,0,0,0.561313965685906,0,0,0.391994892913319,0,-0.562924377796034,-0.253326341486756,-0.069056708999598,-0.108622809454255,0,0,0.0154626343947095,0,-0.348488820831181,0,0,0.513406895082976,0,0,0,0.0568589461625992,0,0,0.0932212648184679,0,0,0.0607032533932755,0,-0.00432498225478433,-0.058596337808009,-0.0583531813537314,0,0.0902930774859383,0,0,0,0,0,0.0622931847343781,0,0,0.655908076152134,-0.135664439229259,-0.12301741567642,0,0,0,0,-0.0635456267496507,-0.146377615932125,0.0568589461625992,-0.0247345088171965,0,0,0,0,-0.0861409897892114,0,0,0,0.0284294730812996,-0.000871510891064846,0.0398077483492925,0,0,0,0.049183945995358,0,0,0,0,0.117654079370114,0,0,-0.397685695244584,0,-0.104243549248443,0.111408520813044,0,0.0169083801006383,-0.00352563517805349,0.688094364360975,0,0.107128197680435,-0.204488185627288,0,0,-0.0200848694689864,0.0412198081756648,0,0.00620392642941745,0,0,0,0,0,0,-0.10718631471932,0,0,0,0,0,0,0,0,0,0,0,0.0973249638358313,0.0599537191453136,0.0568589461625992,0,0,0,0,0,0,-0.0241060230789031,0.248985730905812,0,0,0.0284294730812996,0,0,0.152177775803824,0,0,-0.174945790800525,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.0736987066412652,0,0,0.0191180166692026,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25667406287238,0.259814319081121,0,0,0,0,0,0.152177775803824,0,0.0216468506566261,0,0.107128197680435,0,0,1.93395370080722,0,0,0,-0.104796384789156,0,-0.103459083923787,0,0,0.326138347597148,0,0,0.0111687903068483,0,0,0,0,0,0,0,0,0,0,0,0.115147492443278,0,0,0,-0.373122844697062,0,-0.28720751597291,0,0,0,-0.0556783532411115,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107128197680435,0,0,0,0,0,0,-0.0426618724497856,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.17195271413353,-0.0809168822011027,-0.0432424028433437,0,0,0,-0.054385572482455,0,0,-0.0303099173969771,0,0.126213012940984,0,0,0,0,0,0,0,0,0.107128197680435,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0461948126679924,0,0,0,0,0,0,0,0,0,0,0,0.0819935719215171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0055818901941169,0.0568589461625992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.156227283494445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.000821831706304899,0,0,0,0,0,0,0,0,0.264647151002274,0,0,0,0,-0.0482220752390542,0,0.0678011435737969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.320209057629158,0,0,0,0,0.248843038201798,0,0,0,0,0,0,0,-0.0589990247205535,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0606202079286199,0,0,0.0632493614265218,0,0,0,0,0,0,0,0,0,0,0,0,0.131670221209759,0,0,0,0,0,0,0.0568589461625992,0,0,0.0568589461625992,0.0586981554547665,0,0,0,0,0,0,0,0,1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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=4.1435 | |rna_weight_ug=4.1435 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.41555929429495e-231!GO:0005737;cytoplasm;1.47877180416503e-192!GO:0043226;organelle;4.45868701399169e-184!GO:0043229;intracellular organelle;2.44412865088054e-183!GO:0043231;intracellular membrane-bound organelle;7.78397386885613e-174!GO:0043227;membrane-bound organelle;1.23511752298796e-173!GO:0044444;cytoplasmic part;5.77238563845504e-136!GO:0044422;organelle part;1.13512917647541e-126!GO:0044446;intracellular organelle part;4.16203244230945e-125!GO:0044237;cellular metabolic process;1.14519550994024e-89!GO:0030529;ribonucleoprotein complex;1.8782941514721e-89!GO:0044238;primary metabolic process;9.99474065404266e-88!GO:0032991;macromolecular complex;1.57713845446318e-83!GO:0043170;macromolecule metabolic process;1.04271120593879e-76!GO:0005739;mitochondrion;4.81293680381727e-72!GO:0003723;RNA binding;1.23139333333543e-67!GO:0043233;organelle lumen;1.64556551189242e-67!GO:0031974;membrane-enclosed lumen;1.64556551189242e-67!GO:0005840;ribosome;1.50991879763456e-59!GO:0044428;nuclear part;6.43546680040136e-59!GO:0031090;organelle membrane;3.62960564667128e-58!GO:0005515;protein binding;7.77648680864467e-58!GO:0005634;nucleus;6.40111644681364e-57!GO:0006412;translation;9.72514320217376e-57!GO:0019538;protein metabolic process;3.67077566652428e-56!GO:0003735;structural constituent of ribosome;9.03287852625472e-53!GO:0009058;biosynthetic process;6.03746563373899e-52!GO:0044267;cellular protein metabolic process;3.5079819653373e-51!GO:0044260;cellular macromolecule metabolic process;1.31785805655329e-50!GO:0015031;protein transport;9.50852305200141e-49!GO:0044429;mitochondrial part;2.27550914095029e-48!GO:0033036;macromolecule localization;3.06014147169639e-48!GO:0006396;RNA processing;3.18119811555153e-48!GO:0044249;cellular biosynthetic process;5.19877234041313e-48!GO:0033279;ribosomal subunit;4.32707867738226e-46!GO:0045184;establishment of protein localization;2.19697436174799e-45!GO:0008104;protein localization;2.82504968218831e-45!GO:0009059;macromolecule biosynthetic process;4.71702086148251e-45!GO:0010467;gene expression;2.07464761288604e-41!GO:0005829;cytosol;3.1545937185982e-41!GO:0031967;organelle envelope;4.38482879675587e-40!GO:0031975;envelope;1.10175971248279e-39!GO:0043283;biopolymer metabolic process;1.77052445899833e-39!GO:0043234;protein complex;2.54196535946334e-38!GO:0031981;nuclear lumen;1.68154934568201e-37!GO:0016043;cellular component organization and biogenesis;6.88616922909628e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.22566667052425e-34!GO:0016071;mRNA metabolic process;7.22760948291034e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.34385211315464e-32!GO:0008380;RNA splicing;4.43622810970737e-32!GO:0046907;intracellular transport;1.02971252338372e-31!GO:0005740;mitochondrial envelope;1.49627330683551e-30!GO:0006886;intracellular protein transport;4.58488926331385e-30!GO:0006397;mRNA processing;8.44377523700184e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.04164901291837e-29!GO:0065003;macromolecular complex assembly;8.90077910092555e-29!GO:0031966;mitochondrial membrane;2.68735382217219e-28!GO:0019866;organelle inner membrane;3.16201981274327e-27!GO:0043228;non-membrane-bound organelle;4.93438241738899e-26!GO:0043232;intracellular non-membrane-bound organelle;4.93438241738899e-26!GO:0005743;mitochondrial inner membrane;5.4219852846894e-26!GO:0012505;endomembrane system;7.97343752577654e-26!GO:0044445;cytosolic part;1.17165604374342e-25!GO:0022607;cellular component assembly;3.9111171573635e-25!GO:0015935;small ribosomal subunit;1.48375586885801e-24!GO:0005681;spliceosome;1.70465298785881e-23!GO:0015934;large ribosomal subunit;1.30401382204878e-22!GO:0005783;endoplasmic reticulum;1.6368552489911e-22!GO:0006119;oxidative phosphorylation;2.17269263592531e-22!GO:0006457;protein folding;2.81669846370393e-22!GO:0005654;nucleoplasm;8.59064627182363e-22!GO:0031980;mitochondrial lumen;1.3733909606588e-21!GO:0005759;mitochondrial matrix;1.3733909606588e-21!GO:0044455;mitochondrial membrane part;3.52302265705025e-21!GO:0006996;organelle organization and biogenesis;1.86538998573026e-20!GO:0022618;protein-RNA complex assembly;3.37169759241516e-20!GO:0044432;endoplasmic reticulum part;1.15809349377834e-19!GO:0016874;ligase activity;1.31952872333743e-19!GO:0051641;cellular localization;2.30336696805169e-19!GO:0051649;establishment of cellular localization;2.77747007313094e-19!GO:0006512;ubiquitin cycle;3.30935767166567e-19!GO:0048770;pigment granule;3.87764804987115e-19!GO:0042470;melanosome;3.87764804987115e-19!GO:0005730;nucleolus;4.04378225805898e-19!GO:0005761;mitochondrial ribosome;6.81947275447669e-18!GO:0000313;organellar ribosome;6.81947275447669e-18!GO:0044451;nucleoplasm part;1.02154429449013e-17!GO:0003676;nucleic acid binding;1.28497288295452e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.78629554500181e-17!GO:0019941;modification-dependent protein catabolic process;4.37702704635924e-17!GO:0043632;modification-dependent macromolecule catabolic process;4.37702704635924e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.37702704635924e-17!GO:0005794;Golgi apparatus;5.33223117939685e-17!GO:0044257;cellular protein catabolic process;6.87651567344981e-17!GO:0043285;biopolymer catabolic process;8.14720502621373e-17!GO:0006511;ubiquitin-dependent protein catabolic process;8.96429565085497e-17!GO:0016070;RNA metabolic process;1.19258169670014e-16!GO:0044265;cellular macromolecule catabolic process;1.31232891729489e-16!GO:0008135;translation factor activity, nucleic acid binding;1.86393046255235e-16!GO:0051186;cofactor metabolic process;2.00313698503996e-16!GO:0005746;mitochondrial respiratory chain;4.266416014316e-16!GO:0016462;pyrophosphatase activity;4.36153299298919e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.69308098170282e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.88837967733463e-16!GO:0006605;protein targeting;5.71188332554461e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;6.42670311871236e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.3391137620279e-15!GO:0043412;biopolymer modification;2.34260961380942e-15!GO:0030163;protein catabolic process;2.63248308786047e-15!GO:0005789;endoplasmic reticulum membrane;2.68359089892007e-15!GO:0009057;macromolecule catabolic process;2.90670313132807e-15!GO:0017111;nucleoside-triphosphatase activity;3.17973625929495e-15!GO:0051082;unfolded protein binding;1.00212369123663e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.30685409859615e-14!GO:0044248;cellular catabolic process;1.37333243916344e-14!GO:0042254;ribosome biogenesis and assembly;1.44645683605567e-14!GO:0006732;coenzyme metabolic process;1.9740437568854e-14!GO:0006413;translational initiation;2.31820970096061e-14!GO:0000166;nucleotide binding;2.86661057145936e-14!GO:0003743;translation initiation factor activity;3.28294259595537e-14!GO:0048193;Golgi vesicle transport;4.19347891085028e-14!GO:0006464;protein modification process;5.00878270970145e-14!GO:0050136;NADH dehydrogenase (quinone) activity;5.14792112329003e-14!GO:0003954;NADH dehydrogenase activity;5.14792112329003e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.14792112329003e-14!GO:0008134;transcription factor binding;5.20422111266758e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.41308250855671e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.05374681295989e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.42966289864199e-12!GO:0042773;ATP synthesis coupled electron transport;1.42966289864199e-12!GO:0012501;programmed cell death;1.58695082903524e-12!GO:0006259;DNA metabolic process;2.08784977104743e-12!GO:0006915;apoptosis;2.57794061340188e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.9715344378439e-12!GO:0045271;respiratory chain complex I;2.9715344378439e-12!GO:0005747;mitochondrial respiratory chain complex I;2.9715344378439e-12!GO:0006446;regulation of translational initiation;5.99072315621782e-12!GO:0016192;vesicle-mediated transport;7.46201166795054e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.99750609351389e-12!GO:0043687;post-translational protein modification;1.08174620034691e-11!GO:0009055;electron carrier activity;2.12359113375687e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.48032563033828e-11!GO:0000375;RNA splicing, via transesterification reactions;3.48032563033828e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.48032563033828e-11!GO:0008219;cell death;3.58084241420886e-11!GO:0016265;death;3.58084241420886e-11!GO:0006399;tRNA metabolic process;4.18648888267594e-11!GO:0008565;protein transporter activity;9.36815028387059e-11!GO:0005635;nuclear envelope;1.46703640622009e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.79970301690017e-10!GO:0007005;mitochondrion organization and biogenesis;2.19885881698511e-10!GO:0051188;cofactor biosynthetic process;3.10585856638876e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.95092565064783e-10!GO:0005768;endosome;4.54770721375596e-10!GO:0009259;ribonucleotide metabolic process;5.05389974533125e-10!GO:0005793;ER-Golgi intermediate compartment;5.43823233599445e-10!GO:0008639;small protein conjugating enzyme activity;5.65310479693516e-10!GO:0031965;nuclear membrane;7.33774692664808e-10!GO:0006913;nucleocytoplasmic transport;1.13816066708398e-09!GO:0004842;ubiquitin-protein ligase activity;1.18105750795713e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.38571481879179e-09!GO:0009056;catabolic process;1.39292060532634e-09!GO:0006461;protein complex assembly;1.44104303491611e-09!GO:0006163;purine nucleotide metabolic process;1.56112046603771e-09!GO:0019787;small conjugating protein ligase activity;1.72130120110866e-09!GO:0032553;ribonucleotide binding;1.87624135561475e-09!GO:0032555;purine ribonucleotide binding;1.87624135561475e-09!GO:0051169;nuclear transport;2.00003013648504e-09!GO:0017076;purine nucleotide binding;2.52234573972431e-09!GO:0006364;rRNA processing;3.03312828395603e-09!GO:0009141;nucleoside triphosphate metabolic process;3.46841726578827e-09!GO:0016072;rRNA metabolic process;3.59415230103218e-09!GO:0009150;purine ribonucleotide metabolic process;3.88624591746972e-09!GO:0015986;ATP synthesis coupled proton transport;4.91773170487199e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.91773170487199e-09!GO:0051246;regulation of protein metabolic process;6.43838121215622e-09!GO:0009260;ribonucleotide biosynthetic process;7.00741662796786e-09!GO:0044453;nuclear membrane part;7.00741662796786e-09!GO:0009108;coenzyme biosynthetic process;7.07179759807882e-09!GO:0006164;purine nucleotide biosynthetic process;7.15475317671868e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.02957671299979e-08!GO:0016604;nuclear body;1.14238280348722e-08!GO:0016881;acid-amino acid ligase activity;1.36465337379546e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.37063080084967e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.37063080084967e-08!GO:0003712;transcription cofactor activity;1.44771615695708e-08!GO:0017038;protein import;1.44771615695708e-08!GO:0042981;regulation of apoptosis;1.44771615695708e-08!GO:0044431;Golgi apparatus part;1.4784976690689e-08!GO:0043067;regulation of programmed cell death;1.48385998441905e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.71978820543437e-08!GO:0006366;transcription from RNA polymerase II promoter;1.9357649860753e-08!GO:0065002;intracellular protein transport across a membrane;2.04675730399608e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.13135968505253e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.13135968505253e-08!GO:0019829;cation-transporting ATPase activity;2.35861064380919e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.60470863926088e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.93661058629928e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.93661058629928e-08!GO:0030120;vesicle coat;3.35325124071449e-08!GO:0030662;coated vesicle membrane;3.35325124071449e-08!GO:0048475;coated membrane;3.91384804705122e-08!GO:0030117;membrane coat;3.91384804705122e-08!GO:0003924;GTPase activity;4.32293702379027e-08!GO:0006974;response to DNA damage stimulus;4.58068584093722e-08!GO:0016607;nuclear speck;6.17359181049618e-08!GO:0006752;group transfer coenzyme metabolic process;6.44055094434671e-08!GO:0006754;ATP biosynthetic process;8.77096628837206e-08!GO:0006753;nucleoside phosphate metabolic process;8.77096628837206e-08!GO:0046034;ATP metabolic process;8.77096628837206e-08!GO:0005643;nuclear pore;1.14464438812067e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.19634674404519e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.43111478286365e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.44686710937792e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.29471238986665e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.29471238986665e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.29471238986665e-07!GO:0000139;Golgi membrane;2.33686833373108e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.71622648804646e-07!GO:0007049;cell cycle;2.88028748428428e-07!GO:0043038;amino acid activation;3.65655147689035e-07!GO:0006418;tRNA aminoacylation for protein translation;3.65655147689035e-07!GO:0043039;tRNA aminoacylation;3.65655147689035e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.98704726661114e-07!GO:0032446;protein modification by small protein conjugation;5.17883775796397e-07!GO:0048523;negative regulation of cellular process;5.22372288960119e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.86150061498111e-07!GO:0016740;transferase activity;8.32706163041427e-07!GO:0009117;nucleotide metabolic process;8.39517224530204e-07!GO:0016567;protein ubiquitination;8.64818570092749e-07!GO:0009060;aerobic respiration;1.04292487234695e-06!GO:0006916;anti-apoptosis;1.05256326398924e-06!GO:0050657;nucleic acid transport;1.13740327291237e-06!GO:0051236;establishment of RNA localization;1.13740327291237e-06!GO:0050658;RNA transport;1.13740327291237e-06!GO:0043069;negative regulation of programmed cell death;1.20259875440999e-06!GO:0006403;RNA localization;1.28308780292948e-06!GO:0045259;proton-transporting ATP synthase complex;1.36433026258094e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.61006101809411e-06!GO:0050794;regulation of cellular process;1.707171095297e-06!GO:0016887;ATPase activity;1.75511620022329e-06!GO:0005525;GTP binding;1.94091613417431e-06!GO:0043066;negative regulation of apoptosis;1.96801549669703e-06!GO:0005524;ATP binding;1.99477079291102e-06!GO:0042623;ATPase activity, coupled;2.15053749877771e-06!GO:0045333;cellular respiration;2.16462889080441e-06!GO:0016787;hydrolase activity;2.51690659557107e-06!GO:0005770;late endosome;2.73289878425876e-06!GO:0016779;nucleotidyltransferase activity;2.7428837211744e-06!GO:0032559;adenyl ribonucleotide binding;2.7572826204533e-06!GO:0006281;DNA repair;3.09706691883936e-06!GO:0046930;pore complex;3.73023142197709e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.91859189734515e-06!GO:0000314;organellar small ribosomal subunit;3.91859189734515e-06!GO:0005763;mitochondrial small ribosomal subunit;3.91859189734515e-06!GO:0008654;phospholipid biosynthetic process;3.92996998258831e-06!GO:0006613;cotranslational protein targeting to membrane;3.94341615303966e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;3.98859293012025e-06!GO:0030554;adenyl nucleotide binding;4.18654332704987e-06!GO:0016491;oxidoreductase activity;4.47645761071138e-06!GO:0005762;mitochondrial large ribosomal subunit;5.15201331151829e-06!GO:0000315;organellar large ribosomal subunit;5.15201331151829e-06!GO:0048519;negative regulation of biological process;6.07343802289167e-06!GO:0008026;ATP-dependent helicase activity;7.32962403289356e-06!GO:0045454;cell redox homeostasis;7.40257591203363e-06!GO:0009719;response to endogenous stimulus;7.50855871055385e-06!GO:0006323;DNA packaging;9.17115072369833e-06!GO:0031988;membrane-bound vesicle;9.35730656461019e-06!GO:0000074;regulation of progression through cell cycle;1.1416331825892e-05!GO:0044440;endosomal part;1.15226537256968e-05!GO:0010008;endosome membrane;1.15226537256968e-05!GO:0051726;regulation of cell cycle;1.15839271373745e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.15839271373745e-05!GO:0043623;cellular protein complex assembly;1.67001944379308e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.70560064656287e-05!GO:0003899;DNA-directed RNA polymerase activity;1.73905365894895e-05!GO:0004386;helicase activity;2.39526610614219e-05!GO:0005773;vacuole;2.40350900344949e-05!GO:0005788;endoplasmic reticulum lumen;2.46704161785036e-05!GO:0016853;isomerase activity;2.47592446289569e-05!GO:0005798;Golgi-associated vesicle;2.87299699316215e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.08339198639607e-05!GO:0051170;nuclear import;3.21452911811705e-05!GO:0019843;rRNA binding;3.21645418109681e-05!GO:0032561;guanyl ribonucleotide binding;3.64047877515899e-05!GO:0019001;guanyl nucleotide binding;3.64047877515899e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.64047877515899e-05!GO:0051028;mRNA transport;3.64047877515899e-05!GO:0005667;transcription factor complex;3.89029015276304e-05!GO:0043021;ribonucleoprotein binding;4.39927218179139e-05!GO:0006793;phosphorus metabolic process;4.39927218179139e-05!GO:0006796;phosphate metabolic process;4.39927218179139e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.56520346383619e-05!GO:0006099;tricarboxylic acid cycle;4.60011251637612e-05!GO:0046356;acetyl-CoA catabolic process;4.60011251637612e-05!GO:0016859;cis-trans isomerase activity;4.60289505378496e-05!GO:0006612;protein targeting to membrane;4.92691972724349e-05!GO:0000151;ubiquitin ligase complex;4.93394358019332e-05!GO:0008033;tRNA processing;5.20206234871412e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.5925572603057e-05!GO:0000245;spliceosome assembly;5.67794096469864e-05!GO:0006606;protein import into nucleus;6.71704083609998e-05!GO:0016564;transcription repressor activity;7.62525777600765e-05!GO:0043566;structure-specific DNA binding;7.75843720631607e-05!GO:0009109;coenzyme catabolic process;7.9626121652698e-05!GO:0006084;acetyl-CoA metabolic process;8.20773175223273e-05!GO:0006626;protein targeting to mitochondrion;8.20773175223273e-05!GO:0051187;cofactor catabolic process;8.7613621629493e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;9.15365822516622e-05!GO:0043681;protein import into mitochondrion;9.56867249500976e-05!GO:0003724;RNA helicase activity;0.000102696679829138!GO:0033116;ER-Golgi intermediate compartment membrane;0.000103065704477773!GO:0030216;keratinocyte differentiation;0.00011054192156847!GO:0006091;generation of precursor metabolites and energy;0.000128115762811803!GO:0001533;cornified envelope;0.000129427238922192!GO:0042802;identical protein binding;0.000129427238922192!GO:0051276;chromosome organization and biogenesis;0.000130368197235145!GO:0007006;mitochondrial membrane organization and biogenesis;0.000140449797767112!GO:0006839;mitochondrial transport;0.000145398139543227!GO:0022402;cell cycle process;0.000145443591321087!GO:0051427;hormone receptor binding;0.000146271085970803!GO:0031968;organelle outer membrane;0.000147058623325806!GO:0009967;positive regulation of signal transduction;0.00015136135254287!GO:0004298;threonine endopeptidase activity;0.000155129342879647!GO:0048471;perinuclear region of cytoplasm;0.000159816010635998!GO:0000323;lytic vacuole;0.000171939440949948!GO:0005764;lysosome;0.000171939440949948!GO:0005769;early endosome;0.000172998170183227!GO:0003714;transcription corepressor activity;0.00017868590399607!GO:0031982;vesicle;0.000202736296550003!GO:0008610;lipid biosynthetic process;0.000211464591618889!GO:0019867;outer membrane;0.000218983168807857!GO:0065004;protein-DNA complex assembly;0.000223237910816617!GO:0045786;negative regulation of progression through cell cycle;0.000238756539015093!GO:0051789;response to protein stimulus;0.000241731835609784!GO:0006986;response to unfolded protein;0.000241731835609784!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000253952975118684!GO:0005741;mitochondrial outer membrane;0.000254047016421131!GO:0035257;nuclear hormone receptor binding;0.000256234848018939!GO:0016568;chromatin modification;0.000260125099987714!GO:0046489;phosphoinositide biosynthetic process;0.000263630873995327!GO:0007264;small GTPase mediated signal transduction;0.0002736183385329!GO:0046474;glycerophospholipid biosynthetic process;0.000290091655703439!GO:0051168;nuclear export;0.000313016833120155!GO:0007243;protein kinase cascade;0.000314449513811927!GO:0031324;negative regulation of cellular metabolic process;0.000328591366837513!GO:0031252;leading edge;0.000328591366837513!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000336106173098054!GO:0003713;transcription coactivator activity;0.00035627451852511!GO:0004576;oligosaccharyl transferase activity;0.000366152608599792!GO:0003697;single-stranded DNA binding;0.0003671725600034!GO:0030176;integral to endoplasmic reticulum membrane;0.000371642773628108!GO:0031410;cytoplasmic vesicle;0.000382599193306915!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000428517273222773!GO:0030118;clathrin coat;0.00043258081032447!GO:0008250;oligosaccharyl transferase complex;0.000440952255410787!GO:0009892;negative regulation of metabolic process;0.000446360054722631!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000482780300354493!GO:0031072;heat shock protein binding;0.000499809497257265!GO:0016126;sterol biosynthetic process;0.000510971089477538!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000510971089477538!GO:0046467;membrane lipid biosynthetic process;0.000566190703976461!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000600293915651929!GO:0019222;regulation of metabolic process;0.000600778657497217!GO:0005885;Arp2/3 protein complex;0.000683908806579895!GO:0016310;phosphorylation;0.000699180664194919!GO:0000049;tRNA binding;0.000712696722619503!GO:0050789;regulation of biological process;0.000761828398947591!GO:0009165;nucleotide biosynthetic process;0.000773527922092548!GO:0065009;regulation of a molecular function;0.000776567739311125!GO:0030880;RNA polymerase complex;0.000870525058315986!GO:0005905;coated pit;0.000873824428742478!GO:0030658;transport vesicle membrane;0.000965154408214155!GO:0016044;membrane organization and biogenesis;0.000969642462538768!GO:0030867;rough endoplasmic reticulum membrane;0.000993947890825105!GO:0048500;signal recognition particle;0.00102951881849569!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00105177534889096!GO:0016197;endosome transport;0.0011995973568518!GO:0048522;positive regulation of cellular process;0.00122631475873712!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0012618626127709!GO:0051920;peroxiredoxin activity;0.00126643854361993!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00128045751669013!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00128045751669013!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00128045751669013!GO:0006260;DNA replication;0.00145539106525466!GO:0030132;clathrin coat of coated pit;0.00146023240070533!GO:0044452;nucleolar part;0.00152965473993693!GO:0006650;glycerophospholipid metabolic process;0.00155440415805441!GO:0030119;AP-type membrane coat adaptor complex;0.00156754045842063!GO:0006333;chromatin assembly or disassembly;0.00159747487472322!GO:0006383;transcription from RNA polymerase III promoter;0.00161264743304593!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00177093193740744!GO:0006082;organic acid metabolic process;0.00177908617074083!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00182428195621847!GO:0000428;DNA-directed RNA polymerase complex;0.00182428195621847!GO:0030133;transport vesicle;0.0019073537083808!GO:0006891;intra-Golgi vesicle-mediated transport;0.00191216040861574!GO:0015992;proton transport;0.00196470065289989!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00196470065289989!GO:0019752;carboxylic acid metabolic process;0.00198711596373052!GO:0005048;signal sequence binding;0.00203565588775336!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00204455437970856!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00204455437970856!GO:0030384;phosphoinositide metabolic process;0.00207960873112217!GO:0022890;inorganic cation transmembrane transporter activity;0.0020877393508582!GO:0008186;RNA-dependent ATPase activity;0.00212540920675777!GO:0030660;Golgi-associated vesicle membrane;0.00212540920675777!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00214128812050644!GO:0015399;primary active transmembrane transporter activity;0.00214128812050644!GO:0006818;hydrogen transport;0.00217026964702459!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00223401590798796!GO:0045047;protein targeting to ER;0.00223401590798796!GO:0008637;apoptotic mitochondrial changes;0.00227024254661967!GO:0051252;regulation of RNA metabolic process;0.00256439737077397!GO:0018196;peptidyl-asparagine modification;0.00260074481953911!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00260074481953911!GO:0006506;GPI anchor biosynthetic process;0.00260074481953911!GO:0050662;coenzyme binding;0.00262440859722752!GO:0043065;positive regulation of apoptosis;0.0026607576405298!GO:0030663;COPI coated vesicle membrane;0.0026607576405298!GO:0030126;COPI vesicle coat;0.0026607576405298!GO:0051098;regulation of binding;0.00275918428094299!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00275918428094299!GO:0008312;7S RNA binding;0.00284674560408873!GO:0030131;clathrin adaptor complex;0.00287287590000923!GO:0005791;rough endoplasmic reticulum;0.00287287590000923!GO:0016563;transcription activator activity;0.00297420865268199!GO:0007398;ectoderm development;0.00300338191038002!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0031436823661261!GO:0003690;double-stranded DNA binding;0.00322598247668818!GO:0015980;energy derivation by oxidation of organic compounds;0.00322598247668818!GO:0006414;translational elongation;0.00323678290477343!GO:0048037;cofactor binding;0.00323678290477343!GO:0043068;positive regulation of programmed cell death;0.00332916758486589!GO:0006402;mRNA catabolic process;0.00332916758486589!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00340760082836214!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00347055633618538!GO:0043488;regulation of mRNA stability;0.00354385353732158!GO:0043487;regulation of RNA stability;0.00354385353732158!GO:0030125;clathrin vesicle coat;0.00375493468843363!GO:0030665;clathrin coated vesicle membrane;0.00375493468843363!GO:0003729;mRNA binding;0.00375493468843363!GO:0016481;negative regulation of transcription;0.00379032378190185!GO:0006505;GPI anchor metabolic process;0.00398608408368463!GO:0006417;regulation of translation;0.00406688323455769!GO:0005684;U2-dependent spliceosome;0.00423124136359628!GO:0051128;regulation of cellular component organization and biogenesis;0.00427297361852686!GO:0051087;chaperone binding;0.0042958849184857!GO:0000785;chromatin;0.00443322723346771!GO:0006643;membrane lipid metabolic process;0.00446668760875475!GO:0006497;protein amino acid lipidation;0.0045800314079024!GO:0019899;enzyme binding;0.00481306912395403!GO:0030503;regulation of cell redox homeostasis;0.00485995046157762!GO:0000059;protein import into nucleus, docking;0.00487347949041975!GO:0016272;prefoldin complex;0.00492546687524263!GO:0008632;apoptotic program;0.00523339150243436!GO:0016251;general RNA polymerase II transcription factor activity;0.00532341624647607!GO:0004004;ATP-dependent RNA helicase activity;0.00533897154395894!GO:0030031;cell projection biogenesis;0.00537602734710319!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00555600669849815!GO:0008652;amino acid biosynthetic process;0.00569163349366998!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00581127885835566!GO:0015002;heme-copper terminal oxidase activity;0.00581127885835566!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00581127885835566!GO:0004129;cytochrome-c oxidase activity;0.00581127885835566!GO:0048487;beta-tubulin binding;0.00586395548625611!GO:0006695;cholesterol biosynthetic process;0.00615453631305728!GO:0030659;cytoplasmic vesicle membrane;0.00623019060566287!GO:0006611;protein export from nucleus;0.00638610360771686!GO:0030833;regulation of actin filament polymerization;0.00652413899605318!GO:0042158;lipoprotein biosynthetic process;0.00669301239339068!GO:0001726;ruffle;0.00671424693733301!GO:0043022;ribosome binding;0.0073655593316577!GO:0003711;transcription elongation regulator activity;0.00748071878510816!GO:0048468;cell development;0.00755591752261611!GO:0006520;amino acid metabolic process;0.00780610317250709!GO:0048144;fibroblast proliferation;0.00790183613008523!GO:0048145;regulation of fibroblast proliferation;0.00790183613008523!GO:0000096;sulfur amino acid metabolic process;0.00814405302520589!GO:0030134;ER to Golgi transport vesicle;0.00814405302520589!GO:0030137;COPI-coated vesicle;0.00850125503408129!GO:0044255;cellular lipid metabolic process;0.00862524750220272!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00897758714341607!GO:0030127;COPII vesicle coat;0.00937650612274152!GO:0012507;ER to Golgi transport vesicle membrane;0.00937650612274152!GO:0006354;RNA elongation;0.00941747941668229!GO:0006401;RNA catabolic process;0.00948737382655209!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00948737382655209!GO:0001836;release of cytochrome c from mitochondria;0.00951321099256762!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0100725990394246!GO:0007034;vacuolar transport;0.0102624631719167!GO:0015631;tubulin binding;0.0105092718750504!GO:0008544;epidermis development;0.0105092718750504!GO:0046483;heterocycle metabolic process;0.0105202441194081!GO:0008234;cysteine-type peptidase activity;0.0106766963430276!GO:0051287;NAD binding;0.0106886033222759!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0111981513979416!GO:0005758;mitochondrial intermembrane space;0.011233378409126!GO:0046983;protein dimerization activity;0.0113828429190662!GO:0048146;positive regulation of fibroblast proliferation;0.0115661677831678!GO:0008180;signalosome;0.0115773507642199!GO:0000278;mitotic cell cycle;0.0116556346514825!GO:0005813;centrosome;0.0117274797456133!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0117274797456133!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0119061703275699!GO:0010257;NADH dehydrogenase complex assembly;0.0119061703275699!GO:0033108;mitochondrial respiratory chain complex assembly;0.0119061703275699!GO:0045045;secretory pathway;0.0122181412749276!GO:0006749;glutathione metabolic process;0.0125540115938042!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0131363067153297!GO:0006334;nucleosome assembly;0.0131718492276374!GO:0030036;actin cytoskeleton organization and biogenesis;0.0132627827538056!GO:0016791;phosphoric monoester hydrolase activity;0.0132627827538056!GO:0006984;ER-nuclear signaling pathway;0.0133285298011071!GO:0006595;polyamine metabolic process;0.0134785290911871!GO:0031902;late endosome membrane;0.0135386393311895!GO:0003746;translation elongation factor activity;0.0139159399309733!GO:0006644;phospholipid metabolic process;0.0139857291094442!GO:0016363;nuclear matrix;0.0141528454991582!GO:0044433;cytoplasmic vesicle part;0.0144069825182968!GO:0031301;integral to organelle membrane;0.0144930342697546!GO:0005149;interleukin-1 receptor binding;0.014872576403637!GO:0006352;transcription initiation;0.01490604505054!GO:0031970;organelle envelope lumen;0.0153915650199419!GO:0022884;macromolecule transmembrane transporter activity;0.0153915650199419!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0153915650199419!GO:0031497;chromatin assembly;0.0154920685573393!GO:0009889;regulation of biosynthetic process;0.015575794110349!GO:0030057;desmosome;0.0157388508660141!GO:0030433;ER-associated protein catabolic process;0.0157388508660141!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0157388508660141!GO:0008320;protein transmembrane transporter activity;0.0161835825555374!GO:0006917;induction of apoptosis;0.0167524510158057!GO:0046966;thyroid hormone receptor binding;0.0169553720506026!GO:0006509;membrane protein ectodomain proteolysis;0.0169823977696187!GO:0033619;membrane protein proteolysis;0.0169823977696187!GO:0051540;metal cluster binding;0.0169823977696187!GO:0051536;iron-sulfur cluster binding;0.0169823977696187!GO:0004850;uridine phosphorylase activity;0.0172524180936647!GO:0008092;cytoskeletal protein binding;0.0176262917718812!GO:0051101;regulation of DNA binding;0.0176606397080664!GO:0005774;vacuolar membrane;0.0180165294808145!GO:0031326;regulation of cellular biosynthetic process;0.0180427174323351!GO:0008139;nuclear localization sequence binding;0.0189001050095499!GO:0012506;vesicle membrane;0.0198810161678413!GO:0048518;positive regulation of biological process;0.0199714279052629!GO:0031529;ruffle organization and biogenesis;0.0200615631249016!GO:0005694;chromosome;0.0206569219689189!GO:0043624;cellular protein complex disassembly;0.0206569219689189!GO:0006118;electron transport;0.0207178963251541!GO:0008168;methyltransferase activity;0.0207480023986801!GO:0006979;response to oxidative stress;0.0207646476201296!GO:0016741;transferase activity, transferring one-carbon groups;0.0209301205208761!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0213468907717407!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0215128498579485!GO:0045039;protein import into mitochondrial inner membrane;0.0215128498579485!GO:0012502;induction of programmed cell death;0.0217026315418361!GO:0032984;macromolecular complex disassembly;0.0217026315418361!GO:0006405;RNA export from nucleus;0.0229661740013352!GO:0009451;RNA modification;0.0233845740076519!GO:0016311;dephosphorylation;0.023586074003961!GO:0035258;steroid hormone receptor binding;0.0238024239755917!GO:0005832;chaperonin-containing T-complex;0.023938145807038!GO:0006892;post-Golgi vesicle-mediated transport;0.0239396346852713!GO:0017166;vinculin binding;0.0240862472309287!GO:0046519;sphingoid metabolic process;0.0241761771077341!GO:0045893;positive regulation of transcription, DNA-dependent;0.0242735831061086!GO:0030041;actin filament polymerization;0.0249426343196206!GO:0043492;ATPase activity, coupled to movement of substances;0.0250315586790747!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0260094594313994!GO:0000287;magnesium ion binding;0.0273411187497586!GO:0004518;nuclease activity;0.0285206293099078!GO:0032507;maintenance of cellular protein localization;0.0286365300860226!GO:0004680;casein kinase activity;0.0288516695721082!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0293591769385287!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0296805490294108!GO:0000339;RNA cap binding;0.029873032534016!GO:0009166;nucleotide catabolic process;0.0307288872772678!GO:0008097;5S rRNA binding;0.0312525406623796!GO:0003756;protein disulfide isomerase activity;0.0312525406623796!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0312525406623796!GO:0008287;protein serine/threonine phosphatase complex;0.0312876153818865!GO:0006289;nucleotide-excision repair;0.0317211852716881!GO:0045334;clathrin-coated endocytic vesicle;0.0319847910542648!GO:0050790;regulation of catalytic activity;0.0321028283728377!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0328283419779081!GO:0031323;regulation of cellular metabolic process;0.0332893301867037!GO:0005815;microtubule organizing center;0.0333433394761476!GO:0005869;dynactin complex;0.0334295209239642!GO:0022406;membrane docking;0.0338488291682807!GO:0048278;vesicle docking;0.0338488291682807!GO:0008361;regulation of cell size;0.0339337493737769!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0340225709970063!GO:0004721;phosphoprotein phosphatase activity;0.034224725058202!GO:0000209;protein polyubiquitination;0.0344922244604239!GO:0030521;androgen receptor signaling pathway;0.0350468397463514!GO:0030029;actin filament-based process;0.0352351568206222!GO:0006740;NADPH regeneration;0.0355306300673851!GO:0006098;pentose-phosphate shunt;0.0355306300673851!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0356761330020212!GO:0030145;manganese ion binding;0.0360160453913042!GO:0031625;ubiquitin protein ligase binding;0.0362239468847258!GO:0035035;histone acetyltransferase binding;0.0365680546571724!GO:0003684;damaged DNA binding;0.0370865412983124!GO:0043241;protein complex disassembly;0.037745096005852!GO:0006518;peptide metabolic process;0.037745096005852!GO:0044437;vacuolar part;0.0390280031968003!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0392076197747755!GO:0006733;oxidoreduction coenzyme metabolic process;0.0392076197747755!GO:0005637;nuclear inner membrane;0.0392076197747755!GO:0007040;lysosome organization and biogenesis;0.0392576741407472!GO:0045947;negative regulation of translational initiation;0.0393327978926692!GO:0000178;exosome (RNase complex);0.0399568783044617!GO:0007032;endosome organization and biogenesis;0.0402894829348314!GO:0022411;cellular component disassembly;0.0403295983913473!GO:0016125;sterol metabolic process;0.0403382033983253!GO:0005784;translocon complex;0.041557866384495!GO:0030032;lamellipodium biogenesis;0.041557866384495!GO:0045892;negative regulation of transcription, DNA-dependent;0.041557866384495!GO:0007050;cell cycle arrest;0.042866361227676!GO:0009112;nucleobase metabolic process;0.0428858195966015!GO:0006672;ceramide metabolic process;0.0429237717689146!GO:0006767;water-soluble vitamin metabolic process;0.0436626186943593!GO:0008426;protein kinase C inhibitor activity;0.0436626186943593!GO:0055092;sterol homeostasis;0.0437289461776283!GO:0042632;cholesterol homeostasis;0.0437289461776283!GO:0007041;lysosomal transport;0.0442044936780643!GO:0030128;clathrin coat of endocytic vesicle;0.0444475902184764!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0444475902184764!GO:0030122;AP-2 adaptor complex;0.0444475902184764!GO:0016408;C-acyltransferase activity;0.0444986556911349!GO:0065007;biological regulation;0.0444986556911349!GO:0006904;vesicle docking during exocytosis;0.0453773467083838!GO:0017134;fibroblast growth factor binding;0.0459133517976306!GO:0008415;acyltransferase activity;0.0459239812077337!GO:0044262;cellular carbohydrate metabolic process;0.0459553220074357!GO:0009116;nucleoside metabolic process;0.0459553220074357!GO:0007004;telomere maintenance via telomerase;0.0464067246167033!GO:0032594;protein transport within lipid bilayer;0.0464067246167033!GO:0032907;transforming growth factor-beta3 production;0.0464067246167033!GO:0032596;protein transport into lipid raft;0.0464067246167033!GO:0032910;regulation of transforming growth factor-beta3 production;0.0464067246167033!GO:0032595;B cell receptor transport within lipid bilayer;0.0464067246167033!GO:0033606;chemokine receptor transport within lipid bilayer;0.0464067246167033!GO:0032600;chemokine receptor transport out of lipid raft;0.0464067246167033!GO:0032599;protein transport out of lipid raft;0.0464067246167033!GO:0032597;B cell receptor transport into lipid raft;0.0464067246167033!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0464067246167033!GO:0043154;negative regulation of caspase activity;0.0466982727573171!GO:0030911;TPR domain binding;0.0470401112308498!GO:0031371;ubiquitin conjugating enzyme complex;0.0475439517673313!GO:0006144;purine base metabolic process;0.0476780046889565!GO:0005669;transcription factor TFIID complex;0.0481885503648246!GO:0051539;4 iron, 4 sulfur cluster binding;0.0487315249963269!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0491404674791509!GO:0051881;regulation of mitochondrial membrane potential;0.0492057729953419!GO:0007176;regulation of epidermal growth factor receptor activity;0.0493870670746754!GO:0030968;unfolded protein response;0.0493870670746754!GO:0005765;lysosomal membrane;0.0495132387149228!GO:0045941;positive regulation of transcription;0.0497015812830692!GO:0008213;protein amino acid alkylation;0.0497453913121224!GO:0006479;protein amino acid methylation;0.0497453913121224 | |||
|sample_id=12226 | |sample_id=12226 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=nasal cavity | |sample_tissue=nasal cavity | ||
|top_motifs=ZEB1:2.24526959467;VSX1,2:2.18868796568;TBX4,5:2.12809181792;TP53:2.0026823865;SNAI1..3:1.96143184304;MYOD1:1.48497768442;ADNP_IRX_SIX_ZHX:1.43920024776;CRX:1.35437135408;PPARG:1.22160600364;NANOG:1.20694881922;PDX1:1.18004885877;bHLH_family:1.11826392423;NKX2-3_NKX2-5:1.05504987074;ELK1,4_GABP{A,B1}:1.01521901895;NKX2-1,4:1.01407053803;POU1F1:0.971313852992;HIF1A:0.933817715046;TBP:0.891002014286;NR5A1,2:0.889816832406;LMO2:0.857303458282;SP1:0.8434117732;STAT5{A,B}:0.81921398108;ONECUT1,2:0.761072009811;HLF:0.670857713075;ZNF148:0.670094334411;FOXM1:0.652787126012;ATF4:0.6218727863;ARID5B:0.599958521765;CEBPA,B_DDIT3:0.567490187041;FOX{F1,F2,J1}:0.563857595131;FOX{I1,J2}:0.544736635073;FOS_FOS{B,L1}_JUN{B,D}:0.523451476124;FOXQ1:0.498427243931;PAX4:0.495261975886;IKZF1:0.492477350635;NKX2-2,8:0.489960402305;FOSL2:0.485597753875;GLI1..3:0.479718322411;ALX1:0.477790033128;CDC5L:0.473375819131;TEF:0.466680169416;TEAD1:0.448421302129;NFIL3:0.433358520317;HOX{A6,A7,B6,B7}:0.398337846425;LHX3,4:0.385162391049;RBPJ:0.373412456834;TFCP2:0.340293308203;BACH2:0.319741365075;HOX{A4,D4}:0.307861172237;HAND1,2:0.295786804911;ATF5_CREB3:0.292001907766;AIRE:0.264992282516;XCPE1{core}:0.240786449573;PAX8:0.236970936693;RORA:0.209108377278;SOX17:0.205485997725;NFE2:0.194845230349;GFI1B:0.190757464089;FOXL1:0.182044606768;FOXN1:0.141238016437;HOX{A5,B5}:0.133121593266;ZNF423:0.122726321035;NR6A1:0.112186082217;ATF2:0.106267667439;PAX2:0.0893426074146;OCT4_SOX2{dimer}:0.0834742227363;POU6F1:0.0584440477113;NKX3-2:0.0552033351121;CDX1,2,4:0.0500817005235;ZNF143:0.0489991898882;NRF1:0.0327886594267;TLX2:0.0181275884687;PAX1,9:0.0139938828884;JUN:0.0102425000346;SREBF1,2:-0.00442773477073;TLX1..3_NFIC{dimer}:-0.0298052492179;POU2F1..3:-0.0454798414548;T:-0.0551211763116;LEF1_TCF7_TCF7L1,2:-0.0761004171607;TFAP2{A,C}:-0.0806262860234;PBX1:-0.0832670204812;ELF1,2,4:-0.0882542820715;CREB1:-0.0905944998398;MAFB:-0.103431501754;PRRX1,2:-0.112648885951;MTF1:-0.12666271383;GTF2A1,2:-0.153753203108;NR1H4:-0.161900654325;HNF1A:-0.167947832492;IRF7:-0.177860908231;GZF1:-0.192089529308;NKX6-1,2:-0.194487197659;ATF6:-0.198331173037;EBF1:-0.200144698837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20088530382;CUX2:-0.228162482371;EN1,2:-0.228180627349;NFKB1_REL_RELA:-0.232250483214;AHR_ARNT_ARNT2:-0.239027667596;ESR1:-0.248930764682;PAX5:-0.266900950366;HNF4A_NR2F1,2:-0.269081313846;GATA6:-0.270098664931;SOX2:-0.283285769063;ZFP161:-0.283602020001;NFIX:-0.29952239196;MAZ:-0.324781388333;ZIC1..3:-0.325565239092;ZNF238:-0.336142182449;AR:-0.348342990964;NKX3-1:-0.357743419478;SRF:-0.358143035796;FOXA2:-0.363181073538;POU5F1:-0.368626096171;NHLH1,2:-0.386229340278;RFX2..5_RFXANK_RFXAP:-0.386989272441;SOX5:-0.387022710835;TAL1_TCF{3,4,12}:-0.40311081584;MEF2{A,B,C,D}:-0.436643120842;HOXA9_MEIS1:-0.446441326779;SPIB:-0.45973117492;PAX6:-0.489445411681;SPI1:-0.497904379004;ETS1,2:-0.498199328408;YY1:-0.5121069124;FOXO1,3,4:-0.512740621488;REST:-0.513562539551;MED-1{core}:-0.51540696979;MYBL2:-0.529808502473;TFAP2B:-0.544200482112;POU3F1..4:-0.546057721214;PITX1..3:-0.550457385407;ALX4:-0.551784868999;RREB1:-0.5606750285;FOXP1:-0.561739768233;NFY{A,B,C}:-0.564490096758;ZBTB16:-0.591735371025;ZNF384:-0.595288994021;UFEwm:-0.598252512208;HMX1:-0.616853437927;GFI1:-0.629052481142;NFE2L2:-0.637798686964;KLF4:-0.64392533365;TFAP4:-0.660607232555;HES1:-0.663277316488;RUNX1..3:-0.66378522388;STAT2,4,6:-0.664237468438;SOX{8,9,10}:-0.664956201853;GTF2I:-0.667828677638;STAT1,3:-0.671516153961;TGIF1:-0.672551941939;RXRA_VDR{dimer}:-0.675544058803;BREu{core}:-0.676043937526;SMAD1..7,9:-0.698945934494;MYFfamily:-0.700164755781;RFX1:-0.705139581647;BPTF:-0.706547208435;ZBTB6:-0.711318835989;EVI1:-0.725433353834;MTE{core}:-0.731030669824;HSF1,2:-0.749508214558;EP300:-0.750401227631;MYB:-0.772078404544;TFDP1:-0.794293274701;EGR1..3:-0.795913522878;FOX{D1,D2}:-0.796101202471;HIC1:-0.80482118779;HMGA1,2:-0.832685988905;PRDM1:-0.838824927154;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.849584593431;NR3C1:-0.87761033113;PATZ1:-0.877987174;GCM1,2:-0.921938998131;NFATC1..3:-0.95845109393;SPZ1:-0.970796298144;RXR{A,B,G}:-0.973064329048;IKZF2:-0.980391900825;ESRRA:-1.01865010684;E2F1..5:-1.06033279295;TOPORS:-1.06722551041;NFE2L1:-1.06910594449;FOXP3:-1.06918395894;XBP1:-1.08438011665;DBP:-1.12110044909;DMAP1_NCOR{1,2}_SMARC:-1.17149474793;FOXD3:-1.17475021178;PAX3,7:-1.18922049409;IRF1,2:-1.21428083001;MZF1:-1.27316005881;NANOG{mouse}:-1.40343945541;HBP1_HMGB_SSRP1_UBTF:-1.55894655117;GATA4:-1.80639206183 | |top_motifs=ZEB1:2.24526959467;VSX1,2:2.18868796568;TBX4,5:2.12809181792;TP53:2.0026823865;SNAI1..3:1.96143184304;MYOD1:1.48497768442;ADNP_IRX_SIX_ZHX:1.43920024776;CRX:1.35437135408;PPARG:1.22160600364;NANOG:1.20694881922;PDX1:1.18004885877;bHLH_family:1.11826392423;NKX2-3_NKX2-5:1.05504987074;ELK1,4_GABP{A,B1}:1.01521901895;NKX2-1,4:1.01407053803;POU1F1:0.971313852992;HIF1A:0.933817715046;TBP:0.891002014286;NR5A1,2:0.889816832406;LMO2:0.857303458282;SP1:0.8434117732;STAT5{A,B}:0.81921398108;ONECUT1,2:0.761072009811;HLF:0.670857713075;ZNF148:0.670094334411;FOXM1:0.652787126012;ATF4:0.6218727863;ARID5B:0.599958521765;CEBPA,B_DDIT3:0.567490187041;FOX{F1,F2,J1}:0.563857595131;FOX{I1,J2}:0.544736635073;FOS_FOS{B,L1}_JUN{B,D}:0.523451476124;FOXQ1:0.498427243931;PAX4:0.495261975886;IKZF1:0.492477350635;NKX2-2,8:0.489960402305;FOSL2:0.485597753875;GLI1..3:0.479718322411;ALX1:0.477790033128;CDC5L:0.473375819131;TEF:0.466680169416;TEAD1:0.448421302129;NFIL3:0.433358520317;HOX{A6,A7,B6,B7}:0.398337846425;LHX3,4:0.385162391049;RBPJ:0.373412456834;TFCP2:0.340293308203;BACH2:0.319741365075;HOX{A4,D4}:0.307861172237;HAND1,2:0.295786804911;ATF5_CREB3:0.292001907766;AIRE:0.264992282516;XCPE1{core}:0.240786449573;PAX8:0.236970936693;RORA:0.209108377278;SOX17:0.205485997725;NFE2:0.194845230349;GFI1B:0.190757464089;FOXL1:0.182044606768;FOXN1:0.141238016437;HOX{A5,B5}:0.133121593266;ZNF423:0.122726321035;NR6A1:0.112186082217;ATF2:0.106267667439;PAX2:0.0893426074146;OCT4_SOX2{dimer}:0.0834742227363;POU6F1:0.0584440477113;NKX3-2:0.0552033351121;CDX1,2,4:0.0500817005235;ZNF143:0.0489991898882;NRF1:0.0327886594267;TLX2:0.0181275884687;PAX1,9:0.0139938828884;JUN:0.0102425000346;SREBF1,2:-0.00442773477073;TLX1..3_NFIC{dimer}:-0.0298052492179;POU2F1..3:-0.0454798414548;T:-0.0551211763116;LEF1_TCF7_TCF7L1,2:-0.0761004171607;TFAP2{A,C}:-0.0806262860234;PBX1:-0.0832670204812;ELF1,2,4:-0.0882542820715;CREB1:-0.0905944998398;MAFB:-0.103431501754;PRRX1,2:-0.112648885951;MTF1:-0.12666271383;GTF2A1,2:-0.153753203108;NR1H4:-0.161900654325;HNF1A:-0.167947832492;IRF7:-0.177860908231;GZF1:-0.192089529308;NKX6-1,2:-0.194487197659;ATF6:-0.198331173037;EBF1:-0.200144698837;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.20088530382;CUX2:-0.228162482371;EN1,2:-0.228180627349;NFKB1_REL_RELA:-0.232250483214;AHR_ARNT_ARNT2:-0.239027667596;ESR1:-0.248930764682;PAX5:-0.266900950366;HNF4A_NR2F1,2:-0.269081313846;GATA6:-0.270098664931;SOX2:-0.283285769063;ZFP161:-0.283602020001;NFIX:-0.29952239196;MAZ:-0.324781388333;ZIC1..3:-0.325565239092;ZNF238:-0.336142182449;AR:-0.348342990964;NKX3-1:-0.357743419478;SRF:-0.358143035796;FOXA2:-0.363181073538;POU5F1:-0.368626096171;NHLH1,2:-0.386229340278;RFX2..5_RFXANK_RFXAP:-0.386989272441;SOX5:-0.387022710835;TAL1_TCF{3,4,12}:-0.40311081584;MEF2{A,B,C,D}:-0.436643120842;HOXA9_MEIS1:-0.446441326779;SPIB:-0.45973117492;PAX6:-0.489445411681;SPI1:-0.497904379004;ETS1,2:-0.498199328408;YY1:-0.5121069124;FOXO1,3,4:-0.512740621488;REST:-0.513562539551;MED-1{core}:-0.51540696979;MYBL2:-0.529808502473;TFAP2B:-0.544200482112;POU3F1..4:-0.546057721214;PITX1..3:-0.550457385407;ALX4:-0.551784868999;RREB1:-0.5606750285;FOXP1:-0.561739768233;NFY{A,B,C}:-0.564490096758;ZBTB16:-0.591735371025;ZNF384:-0.595288994021;UFEwm:-0.598252512208;HMX1:-0.616853437927;GFI1:-0.629052481142;NFE2L2:-0.637798686964;KLF4:-0.64392533365;TFAP4:-0.660607232555;HES1:-0.663277316488;RUNX1..3:-0.66378522388;STAT2,4,6:-0.664237468438;SOX{8,9,10}:-0.664956201853;GTF2I:-0.667828677638;STAT1,3:-0.671516153961;TGIF1:-0.672551941939;RXRA_VDR{dimer}:-0.675544058803;BREu{core}:-0.676043937526;SMAD1..7,9:-0.698945934494;MYFfamily:-0.700164755781;RFX1:-0.705139581647;BPTF:-0.706547208435;ZBTB6:-0.711318835989;EVI1:-0.725433353834;MTE{core}:-0.731030669824;HSF1,2:-0.749508214558;EP300:-0.750401227631;MYB:-0.772078404544;TFDP1:-0.794293274701;EGR1..3:-0.795913522878;FOX{D1,D2}:-0.796101202471;HIC1:-0.80482118779;HMGA1,2:-0.832685988905;PRDM1:-0.838824927154;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.849584593431;NR3C1:-0.87761033113;PATZ1:-0.877987174;GCM1,2:-0.921938998131;NFATC1..3:-0.95845109393;SPZ1:-0.970796298144;RXR{A,B,G}:-0.973064329048;IKZF2:-0.980391900825;ESRRA:-1.01865010684;E2F1..5:-1.06033279295;TOPORS:-1.06722551041;NFE2L1:-1.06910594449;FOXP3:-1.06918395894;XBP1:-1.08438011665;DBP:-1.12110044909;DMAP1_NCOR{1,2}_SMARC:-1.17149474793;FOXD3:-1.17475021178;PAX3,7:-1.18922049409;IRF1,2:-1.21428083001;MZF1:-1.27316005881;NANOG{mouse}:-1.40343945541;HBP1_HMGB_SSRP1_UBTF:-1.55894655117;GATA4:-1.80639206183 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12226-129F3;search_select_hide=table117:FF:12226-129F3 | |||
}} | }} | ||
Latest revision as of 18:35, 4 June 2020
| Name: | nasal epithelial cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12589,CNhs12554 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
No results for this sample
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12589
library id: CNhs12554This sample isn't target for the analysis
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12589
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.374 |
| 10 | 10 | 0.843 |
| 100 | 100 | 0.774 |
| 101 | 101 | 0.242 |
| 102 | 102 | 0.257 |
| 103 | 103 | 0.242 |
| 104 | 104 | 0.7 |
| 105 | 105 | 0.0151 |
| 106 | 106 | 0.637 |
| 107 | 107 | 0.766 |
| 108 | 108 | 0.218 |
| 109 | 109 | 5.01831e-4 |
| 11 | 11 | 0.285 |
| 110 | 110 | 0.144 |
| 111 | 111 | 0.137 |
| 112 | 112 | 0.346 |
| 113 | 113 | 0.0666 |
| 114 | 114 | 0.401 |
| 115 | 115 | 0.614 |
| 116 | 116 | 0.52 |
| 117 | 117 | 0.216 |
| 118 | 118 | 0.917 |
| 119 | 119 | 0.537 |
| 12 | 12 | 0.6 |
| 120 | 120 | 0.187 |
| 121 | 121 | 0.536 |
| 122 | 122 | 0.0147 |
| 123 | 123 | 0.958 |
| 124 | 124 | 0.175 |
| 125 | 125 | 0.589 |
| 126 | 126 | 0.167 |
| 127 | 127 | 0.102 |
| 128 | 128 | 0.912 |
| 129 | 129 | 0.498 |
| 13 | 13 | 0.0056 |
| 130 | 130 | 0.458 |
| 131 | 131 | 0.652 |
| 132 | 132 | 0.783 |
| 133 | 133 | 0.0041 |
| 134 | 134 | 0.518 |
| 135 | 135 | 0.996 |
| 136 | 136 | 0.0707 |
| 137 | 137 | 0.23 |
| 138 | 138 | 0.508 |
| 139 | 139 | 0.11 |
| 14 | 14 | 0.599 |
| 140 | 140 | 0.274 |
| 141 | 141 | 0.784 |
| 142 | 142 | 0.355 |
| 143 | 143 | 0.576 |
| 144 | 144 | 0.0675 |
| 145 | 145 | 0.303 |
| 146 | 146 | 0.0118 |
| 147 | 147 | 0.706 |
| 148 | 148 | 0.0616 |
| 149 | 149 | 0.868 |
| 15 | 15 | 0.295 |
| 150 | 150 | 0.772 |
| 151 | 151 | 0.438 |
| 152 | 152 | 0.0665 |
| 153 | 153 | 0.183 |
| 154 | 154 | 0.899 |
| 155 | 155 | 0.819 |
| 156 | 156 | 0.914 |
| 157 | 157 | 0.83 |
| 158 | 158 | 0.956 |
| 159 | 159 | 0.323 |
| 16 | 16 | 0.102 |
| 160 | 160 | 0.932 |
| 161 | 161 | 0.893 |
| 162 | 162 | 0.891 |
| 163 | 163 | 0.537 |
| 164 | 164 | 0.0882 |
| 165 | 165 | 0.971 |
| 166 | 166 | 0.441 |
| 167 | 167 | 0.78 |
| 168 | 168 | 0.753 |
| 169 | 169 | 0.173 |
| 17 | 17 | 0.244 |
| 18 | 18 | 0.0951 |
| 19 | 19 | 0.697 |
| 2 | 2 | 0.733 |
| 20 | 20 | 0.245 |
| 21 | 21 | 0.828 |
| 22 | 22 | 0.526 |
| 23 | 23 | 0.481 |
| 24 | 24 | 0.11 |
| 25 | 25 | 0.875 |
| 26 | 26 | 0.453 |
| 27 | 27 | 0.658 |
| 28 | 28 | 0.549 |
| 29 | 29 | 0.149 |
| 3 | 3 | 0.49 |
| 30 | 30 | 0.316 |
| 31 | 31 | 0.856 |
| 32 | 32 | 0.137 |
| 33 | 33 | 0.154 |
| 34 | 34 | 0.507 |
| 35 | 35 | 0.261 |
| 36 | 36 | 0.207 |
| 37 | 37 | 0.179 |
| 38 | 38 | 0.335 |
| 39 | 39 | 0.536 |
| 4 | 4 | 0.615 |
| 40 | 40 | 0.00611 |
| 41 | 41 | 0.244 |
| 42 | 42 | 0.473 |
| 43 | 43 | 0.415 |
| 44 | 44 | 0.835 |
| 45 | 45 | 0.256 |
| 46 | 46 | 0.848 |
| 47 | 47 | 0.255 |
| 48 | 48 | 0.251 |
| 49 | 49 | 0.648 |
| 5 | 5 | 0.89 |
| 50 | 50 | 0.47 |
| 51 | 51 | 0.932 |
| 52 | 52 | 0.552 |
| 53 | 53 | 0.554 |
| 54 | 54 | 0.723 |
| 55 | 55 | 0.981 |
| 56 | 56 | 0.557 |
| 57 | 57 | 0.15 |
| 58 | 58 | 0.878 |
| 59 | 59 | 0.506 |
| 6 | 6 | 0.49 |
| 60 | 60 | 0.308 |
| 61 | 61 | 0.25 |
| 62 | 62 | 0.77 |
| 63 | 63 | 0.139 |
| 64 | 64 | 0.302 |
| 65 | 65 | 0.341 |
| 66 | 66 | 0.559 |
| 67 | 67 | 0.5 |
| 68 | 68 | 0.0397 |
| 69 | 69 | 0.343 |
| 7 | 7 | 0.189 |
| 70 | 70 | 0.0032 |
| 71 | 71 | 0.572 |
| 72 | 72 | 0.17 |
| 73 | 73 | 0.00971 |
| 74 | 74 | 0.0895 |
| 75 | 75 | 0.162 |
| 76 | 76 | 0.393 |
| 77 | 77 | 0.171 |
| 78 | 78 | 0.00643 |
| 79 | 79 | 0.0888 |
| 8 | 8 | 0.671 |
| 80 | 80 | 0.621 |
| 81 | 81 | 0.516 |
| 82 | 82 | 0.781 |
| 83 | 83 | 0.486 |
| 84 | 84 | 0.8 |
| 85 | 85 | 0.429 |
| 86 | 86 | 0.806 |
| 87 | 87 | 0.00983 |
| 88 | 88 | 0.872 |
| 89 | 89 | 0.0298 |
| 9 | 9 | 0.656 |
| 90 | 90 | 0.709 |
| 91 | 91 | 0.631 |
| 92 | 92 | 0.491 |
| 93 | 93 | 0.375 |
| 94 | 94 | 0.736 |
| 95 | 95 | 0.0135 |
| 96 | 96 | 0.424 |
| 97 | 97 | 0.787 |
| 98 | 98 | 0.581 |
| 99 | 99 | 0.432 |
library id: CNhs12554This sample isn't target for the analysis
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12589
library id: CNhs12554
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000197 (receptor cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000710 (neurecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0000098 (sensory epithelial cell)
0002167 (olfactory epithelial cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0104976 (human nasal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
