FFCP PHASE1:Hg19::chr10:20115897..20115911,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:20115897..20115911,+ | |||
|coexpression_cluster_id=C7 | |coexpression_cluster_id=C7 | ||
|description=CAGE_peak_at_chr10:20115897..20115911,+ | |description=CAGE_peak_at_chr10:20115897..20115911,+ | ||
|id=chr10:20115897..20115911,+ | |id=chr10:20115897..20115911,+ | ||
|ontology_enrichment_celltype=CL:0002057!5.33e-123!42;CL:0000860!4.03e-114!45;CL:0002194!2.84e-81!63;CL:0000576!2.84e-81!63;CL:0000040!2.84e-81!63;CL:0000559!2.84e-81!63;CL:0000766!7.82e-81!76;CL:0002009!1.70e-78!65;CL:0000839!3.07e-72!70;CL:0000557!4.31e-71!71;CL:0000763!1.37e-51!112;CL:0000049!1.37e-51!112;CL:0002087!7.54e-50!119;CL:0000738!8.34e-50!140;CL:0002031!1.16e-40!124;CL:0000037!1.88e-38!172;CL:0000566!1.88e-38!172;CL:0000988!1.02e-35!182;CL:0002032!5.31e-35!165;CL:0000837!5.31e-35!165;CL:0002393!1.95e-21!9;CL:0002397!1.95e-21!9;CL:0000134!1.55e-12!358;CL:0002320!4.45e-12!365;CL:0000767!3.19e-11!3;CL:0000219!1.84e-10!390;CL:0000842!2.55e-10!3;CL:0000048!1.54e-08!430;CL:0000723!2.88e-08!436;CL:0000034!6.47e-08!444;CL:0000224!7.58e-08!4;CL:0000094!4.28e-07!8 | |ontology_enrichment_celltype=CL:0002057!5.33e-123!42;CL:0000860!4.03e-114!45;CL:0002194!2.84e-81!63;CL:0000576!2.84e-81!63;CL:0000040!2.84e-81!63;CL:0000559!2.84e-81!63;CL:0000766!7.82e-81!76;CL:0002009!1.70e-78!65;CL:0000839!3.07e-72!70;CL:0000557!4.31e-71!71;CL:0000763!1.37e-51!112;CL:0000049!1.37e-51!112;CL:0002087!7.54e-50!119;CL:0000738!8.34e-50!140;CL:0002031!1.16e-40!124;CL:0000037!1.88e-38!172;CL:0000566!1.88e-38!172;CL:0000988!1.02e-35!182;CL:0002032!5.31e-35!165;CL:0000837!5.31e-35!165;CL:0002393!1.95e-21!9;CL:0002397!1.95e-21!9;CL:0000134!1.55e-12!358;CL:0002320!4.45e-12!365;CL:0000767!3.19e-11!3;CL:0000219!1.84e-10!390;CL:0000842!2.55e-10!3;CL:0000048!1.54e-08!430;CL:0000723!2.88e-08!436;CL:0000034!6.47e-08!444;CL:0000224!7.58e-08!4;CL:0000094!4.28e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.56e-136;33!CL:0002057;3.56e-136;33!CL:0000473;3.34e-92;39!CL:0000234;3.34e-92;39!CL:0000576;1.22e-61;48!CL:0000766;8.60e-40;69!CL:0000767;4.96e-20;3!CL:0000763;3.02e-18;100!CL:0002087;4.89e-14;104!CL:0000738;1.59e-10;136!CL:0000094;7.58e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.55e-111,42;CL:0002057,1.55e-111,42;CL:0000473,4.84e-97,48;CL:0000234,4.84e-97,48;CL:0000766,1.23e-77,72;CL:0002194,9.72e-77,59;CL:0000576,9.72e-77,59;CL:0000040,9.72e-77,59;CL:0000559,9.72e-77,59;CL:0002009,4.06e-74,61;CL:0000839,2.99e-68,66;CL:0000557,3.52e-67,67;CL:0000763,1.81e-50,108;CL:0000049,1.81e-50,108;CL:0000738,3.43e-39,136;CL:0002087,1.78e-37,115;CL:0002031,9.80e-36,120;CL:0002032,2.09e-32,161;CL:0000837,2.09e-32,161;CL:0000037,7.25e-31,168;CL:0000988,4.62e-29,177;CL:0000767,2.73e-20,3;CL:0000134,4.30e-12,354;CL:0002320,9.24e-12,361;CL:0000219,1.38e-10,386;CL:0000048,3.78e-09,427;CL:0000723,5.97e-09,433;CL:0000034,1.08e-08,441;CL:0000094,6.11e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.40e-81;42!CL:0000049;2.26e-17;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.57e-63!102;UBERON:0003061!5.57e-63!102;UBERON:0002371!4.83e-62!80;UBERON:0001474!4.75e-57!86;UBERON:0002193!2.05e-56!112;UBERON:0004765!3.87e-47!101;UBERON:0001434!3.87e-47!101;UBERON:0002405!3.34e-40!115;UBERON:0003081!2.39e-25!216;UBERON:0002204!1.39e-24!167;UBERON:0002384!1.88e-11!375;UBERON:0000926!2.95e-08!448;UBERON:0004120!2.95e-08!448;UBERON:0006603!2.95e-08!448;UBERON:0000178!3.33e-07!15;UBERON:0000179!3.33e-07!15;UBERON:0000463!3.33e-07!15 | |ontology_enrichment_uberon=UBERON:0002390!5.57e-63!102;UBERON:0003061!5.57e-63!102;UBERON:0002371!4.83e-62!80;UBERON:0001474!4.75e-57!86;UBERON:0002193!2.05e-56!112;UBERON:0004765!3.87e-47!101;UBERON:0001434!3.87e-47!101;UBERON:0002405!3.34e-40!115;UBERON:0003081!2.39e-25!216;UBERON:0002204!1.39e-24!167;UBERON:0002384!1.88e-11!375;UBERON:0000926!2.95e-08!448;UBERON:0004120!2.95e-08!448;UBERON:0006603!2.95e-08!448;UBERON:0000178!3.33e-07!15;UBERON:0000179!3.33e-07!15;UBERON:0000463!3.33e-07!15 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.51e-59,76;UBERON:0001474,3.24e-54,82;UBERON:0004765,4.79e-49,90;UBERON:0002405,2.47e-47,93;UBERON:0002390,1.04e-44,98;UBERON:0003061,1.04e-44,98;UBERON:0001434,9.85e-44,100;UBERON:0002193,3.50e-40,108;UBERON:0002204,2.05e-24,167;UBERON:0003081,2.93e-19,203;UBERON:0002384,2.63e-11,371;UBERON:0000926,1.09e-10,315;UBERON:0004120,1.09e-10,315;UBERON:0006603,1.09e-10,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.53531759238885,1.85779347979291,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.651032612147555,0,0,0,1.30858414901608,1.13362783106643,1.4555043671269,5.11343881192506,2.87817521615278,4.33588919253145,2.01384674625505,4.86705342405291,6.85798466676897,4.82643953031266,2.5819387343353,4.06279459783025,3.20011977222428,1.36453075028923,5.8428105955722,2.44867113896722,1.92557416245656,1.91801137739712,0.659702600373432,2.19410023383795,1.27867425159808,0.290209238628584,1.13477044938228,1.86846674698672,5.7787193009051,4.69334626578181,9.77349801173025,0,0.368277635987565,2.21523671208619,0.845021145247767,0.212604299965044,0.838634582033504,1.01095768031846,0.901061357049038,0.32145117339416,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0.411362273086194,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,1.53531759238885,1.85779347979291,0,0,0,0,0,0,0.553995408531877,0.200544447470142,0.651032612147555,0,0,0,1.30858414901608,1.13362783106643,1.4555043671269,5.11343881192506,2.87817521615278,4.33588919253145,2.01384674625505,4.86705342405291,6.85798466676897,4.82643953031266,2.5819387343353,4.06279459783025,3.20011977222428,1.36453075028923,5.8428105955722,2.44867113896722,1.92557416245656,1.91801137739712,0.659702600373432,2.19410023383795,1.27867425159808,0.290209238628584,1.13477044938228,1.86846674698672,5.7787193009051,4.69334626578181,9.77349801173025,0,0.368277635987565,2.21523671208619,0.845021145247767,0.212604299965044,0.838634582033504,1.01095768031846,0.901061357049038,0.32145117339416,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.862856803274467,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0.411362273086194,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.665756774185513,0,0 | ||
|short_description=p@chr10:20115897..20115911,+ | |short_description=p@chr10:20115897..20115911,+ | ||
}} | }} |
Latest revision as of 12:28, 23 July 2015
Short description: | p@chr10:20115897..20115911, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:20115897..20115911, + |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.55e-111 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.55e-111 | 42 |
defensive cell | 4.84e-97 | 48 |
phagocyte | 4.84e-97 | 48 |
myeloid leukocyte | 1.23e-77 | 72 |
monopoietic cell | 9.72e-77 | 59 |
monocyte | 9.72e-77 | 59 |
monoblast | 9.72e-77 | 59 |
promonocyte | 9.72e-77 | 59 |
macrophage dendritic cell progenitor | 4.06e-74 | 61 |
myeloid lineage restricted progenitor cell | 2.99e-68 | 66 |
granulocyte monocyte progenitor cell | 3.52e-67 | 67 |
myeloid cell | 1.81e-50 | 108 |
common myeloid progenitor | 1.81e-50 | 108 |
leukocyte | 3.43e-39 | 136 |
nongranular leukocyte | 1.78e-37 | 115 |
hematopoietic lineage restricted progenitor cell | 9.80e-36 | 120 |
hematopoietic oligopotent progenitor cell | 2.09e-32 | 161 |
hematopoietic multipotent progenitor cell | 2.09e-32 | 161 |
hematopoietic stem cell | 7.25e-31 | 168 |
hematopoietic cell | 4.62e-29 | 177 |
basophil | 2.73e-20 | 3 |
mesenchymal cell | 4.30e-12 | 354 |
connective tissue cell | 9.24e-12 | 361 |
motile cell | 1.38e-10 | 386 |
multi fate stem cell | 3.78e-09 | 427 |
somatic stem cell | 5.97e-09 | 433 |
stem cell | 1.08e-08 | 441 |
granulocyte | 6.11e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.51e-59 | 76 |
bone element | 3.24e-54 | 82 |
skeletal element | 4.79e-49 | 90 |
immune system | 2.47e-47 | 93 |
hematopoietic system | 1.04e-44 | 98 |
blood island | 1.04e-44 | 98 |
skeletal system | 9.85e-44 | 100 |
hemolymphoid system | 3.50e-40 | 108 |
musculoskeletal system | 2.05e-24 | 167 |
lateral plate mesoderm | 2.93e-19 | 203 |
connective tissue | 2.63e-11 | 371 |
mesoderm | 1.09e-10 | 315 |
mesoderm-derived structure | 1.09e-10 | 315 |
presumptive mesoderm | 1.09e-10 | 315 |