FFCP PHASE1:Hg19::chr14:22409325..22409330,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt=A2NVQ0 | |UniProt=A2NVQ0 | ||
|association_with_transcript=0bp_to_uc001wck.2,uc010ajb.1_5end | |association_with_transcript=0bp_to_uc001wck.2,uc010ajb.1_5end | ||
|cluster_id=chr14:22409325..22409330,+ | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_2_at_uc001wck.2_5end,CAGE_peak_2_at_uc010ajb.1_5end | |description=CAGE_peak_2_at_uc001wck.2_5end,CAGE_peak_2_at_uc010ajb.1_5end | ||
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|ontology_enrichment_celltype=CL:0000791!1.06e-32!18;CL:0000789!1.06e-32!18;CL:0002420!1.06e-32!18;CL:0002419!1.06e-32!18;CL:0000790!1.06e-32!18;CL:0000084!1.13e-22!25;CL:0000827!1.13e-22!25;CL:0000624!1.52e-21!6;CL:0000625!1.55e-16!11;CL:0000838!1.55e-12!52;CL:0000898!2.56e-12!3;CL:0000542!3.12e-12!53;CL:0000051!3.12e-12!53;CL:0000842!6.54e-11!3;CL:0000815!8.18e-09!2;CL:0000792!8.18e-09!2;CL:0002677!8.18e-09!2;CL:0000224!2.68e-08!4 | |ontology_enrichment_celltype=CL:0000791!1.06e-32!18;CL:0000789!1.06e-32!18;CL:0002420!1.06e-32!18;CL:0002419!1.06e-32!18;CL:0000790!1.06e-32!18;CL:0000084!1.13e-22!25;CL:0000827!1.13e-22!25;CL:0000624!1.52e-21!6;CL:0000625!1.55e-16!11;CL:0000838!1.55e-12!52;CL:0000898!2.56e-12!3;CL:0000542!3.12e-12!53;CL:0000051!3.12e-12!53;CL:0000842!6.54e-11!3;CL:0000815!8.18e-09!2;CL:0000792!8.18e-09!2;CL:0002677!8.18e-09!2;CL:0000224!2.68e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0000791;1.37e-34;18!CL:0000789;1.37e-34;18!CL:0002419;1.37e-34;18!CL:0000625;2.42e-28;11!CL:0000084;1.97e-24;25!CL:0000898;2.52e-20;3!CL:0000815;3.91e-14;2!CL:0000792;3.91e-14;2!CL:0002677;3.91e-14;2!CL:0000624;1.96e-10;6!CL:0000895;6.30e-08;1!CL:0000542;8.56e-07;53 | |ontology_enrichment_celltype_v019=CL:0000791;1.37e-34;18!CL:0000789;1.37e-34;18!CL:0002419;1.37e-34;18!CL:0000625;2.42e-28;11!CL:0000084;1.97e-24;25!CL:0000898;2.52e-20;3!CL:0000815;3.91e-14;2!CL:0000792;3.91e-14;2!CL:0002677;3.91e-14;2!CL:0000624;1.96e-10;6!CL:0000895;6.30e-08;1!CL:0000542;8.56e-07;53 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.11e-34,18;CL:0000789,1.11e-34,18;CL:0002420,1.11e-34,18;CL:0002419,1.11e-34,18;CL:0000790,1.11e-34,18;CL:0000625,1.71e-28,11;CL:0000084,1.70e-24,25;CL:0000827,1.70e-24,25;CL:0000898,2.97e-20,3;CL:0000815,3.67e-14,2;CL:0000792,3.67e-14,2;CL:0002677,3.67e-14,2;CL:0000838,7.00e-11,52;CL:0000542,1.21e-10,53;CL:0000051,1.21e-10,53;CL:0000624,2.13e-10,6;CL:0000810,7.97e-08,1;CL:0000895,7.97e-08,1;CL:0002436,7.97e-08,1;CL:0002427,7.97e-08,1;CL:0002428,7.97e-08,1;CL:0002429,7.97e-08,1;CL:0002433,7.97e-08,1;CL:0002431,7.97e-08,1;CL:0002432,7.97e-08,1 | |||
|ontology_enrichment_development_v019=CL:0000790;1.37e-34;18!CL:0002427;6.30e-08;1!CL:0000051;8.56e-07;53 | |ontology_enrichment_development_v019=CL:0000790;1.37e-34;18!CL:0002427;6.30e-08;1!CL:0000051;8.56e-07;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!4.67e-22!15;UBERON:0000179!4.67e-22!15;UBERON:0000463!4.67e-22!15;UBERON:0004177!1.69e-12!7;UBERON:0002370!8.15e-09!4;UBERON:0005058!8.15e-09!4;UBERON:0009113!8.15e-09!4;UBERON:0003295!8.15e-09!4;UBERON:0005562!8.15e-09!4 | |ontology_enrichment_uberon=UBERON:0000178!4.67e-22!15;UBERON:0000179!4.67e-22!15;UBERON:0000463!4.67e-22!15;UBERON:0004177!1.69e-12!7;UBERON:0002370!8.15e-09!4;UBERON:0005058!8.15e-09!4;UBERON:0009113!8.15e-09!4;UBERON:0003295!8.15e-09!4;UBERON:0005562!8.15e-09!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.24e-07;15!UBERON:0000179;5.24e-07;15!UBERON:0000463;5.24e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;5.24e-07;15!UBERON:0000179;5.24e-07;15!UBERON:0000463;5.24e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.07e-07,15;UBERON:0000179,6.07e-07,15;UBERON:0000463,6.07e-07,15 | |||
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| ||
|short_description=p2@uc001wck.2,p2@uc010ajb.1 | |short_description=p2@uc001wck.2,p2@uc010ajb.1 | ||
}} | }} |
Latest revision as of 04:10, 19 September 2015
Short description: | p2@uc001wck.2, p2@uc010ajb.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc001wck.2_5end, CAGE_peak_2_at_uc010ajb.1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_uc001wck.2, uc010ajb.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.11e-34 | 18 |
alpha-beta T cell | 1.11e-34 | 18 |
immature T cell | 1.11e-34 | 18 |
mature T cell | 1.11e-34 | 18 |
immature alpha-beta T cell | 1.11e-34 | 18 |
CD8-positive, alpha-beta T cell | 1.71e-28 | 11 |
T cell | 1.70e-24 | 25 |
pro-T cell | 1.70e-24 | 25 |
naive T cell | 2.97e-20 | 3 |
regulatory T cell | 3.67e-14 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 3.67e-14 | 2 |
naive regulatory T cell | 3.67e-14 | 2 |
lymphoid lineage restricted progenitor cell | 7.00e-11 | 52 |
lymphocyte | 1.21e-10 | 53 |
common lymphoid progenitor | 1.21e-10 | 53 |
CD4-positive, alpha-beta T cell | 2.13e-10 | 6 |
CD4-positive, alpha-beta thymocyte | 7.97e-08 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 7.97e-08 | 1 |
mature CD4 single-positive thymocyte | 7.97e-08 | 1 |
resting double-positive thymocyte | 7.97e-08 | 1 |
double-positive blast | 7.97e-08 | 1 |
CD69-positive double-positive thymocyte | 7.97e-08 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 7.97e-08 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 7.97e-08 | 1 |
CD24-positive, CD4 single-positive thymocyte | 7.97e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
blood | 6.07e-07 | 15 |
haemolymphatic fluid | 6.07e-07 | 15 |
organism substance | 6.07e-07 | 15 |