FFCP PHASE1:Hg19::chr14:22938665..22938688,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=12264|TSSclassifier=W|UniProt=|association_with_transcript=1bp_to_ENST00000535880_5end|description=CAGE_peak_1_at_TRDV3_5end|id=chr14:22938665..22938688,-|ontology_enrichment_celltype=CL:0000791!5.70e-21!18;CL:0000789!5.70e-21!18;CL:0002420!5.70e-21!18;CL:0002419!5.70e-21!18;CL:0000790!5.70e-21!18;CL:0000084!1.43e-13!25;CL:0000827!1.43e-13!25;CL:0000542!6.58e-13!53;CL:0000051!6.58e-13!53;CL:0000625!1.80e-12!11;CL:0000838!2.89e-12!52;CL:0000624!4.07e-09!6;CL:0000738!9.96e-07!140|ontology_enrichment_celltype_v019=CL:0000791;1.64e-14;18!CL:0000789;1.64e-14;18!CL:0002419;1.64e-14;18!CL:0000625;4.55e-14;11!CL:0000084;4.23e-10;25|ontology_enrichment_celltype_v019_2=CL:0000791,1.68e-14,18;CL:0000789,1.68e-14,18;CL:0002420,1.68e-14,18;CL:0002419,1.68e-14,18;CL:0000790,1.68e-14,18;CL:0000625,3.97e-14,11;CL:0000084,4.30e-10,25;CL:0000827,4.30e-10,25|ontology_enrichment_development_v019=CL:0000790;1.64e-14;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.73e-29!115;UBERON:0001049!3.78e-14!57;UBERON:0005068!3.78e-14!57;UBERON:0006241!3.78e-14!57;UBERON:0007135!3.78e-14!57;UBERON:0002616!2.44e-12!59;UBERON:0002780!5.97e-12!41;UBERON:0001890!5.97e-12!41;UBERON:0006240!5.97e-12!41;UBERON:0003080!1.62e-11!42;UBERON:0002020!2.46e-11!34;UBERON:0003528!2.46e-11!34;UBERON:0001893!2.51e-11!34;UBERON:0002791!1.03e-10!33;UBERON:0000955!5.52e-10!69;UBERON:0006238!5.52e-10!69;UBERON:0001869!9.86e-10!32;UBERON:0001017!3.41e-09!82;UBERON:0005743!4.29e-09!86;UBERON:0000178!9.33e-09!15;UBERON:0000179!9.33e-09!15;UBERON:0000463!9.33e-09!15;UBERON:0002619!1.14e-08!22;UBERON:0003075!1.42e-08!86;UBERON:0007284!1.42e-08!86;UBERON:0002346!1.79e-08!90;UBERON:0004177!6.38e-08!7;UBERON:0000073!1.91e-07!94;UBERON:0001016!1.91e-07!94;UBERON:0000956!2.91e-07!25;UBERON:0000203!2.91e-07!25;UBERON:0001950!4.23e-07!20;UBERON:0002370!4.40e-07!4;UBERON:0005058!4.40e-07!4;UBERON:0009113!4.40e-07!4;UBERON:0003295!4.40e-07!4;UBERON:0005562!4.40e-07!4;UBERON:0000153!4.72e-07!129;UBERON:0007811!4.72e-07!129;UBERON:0003056!8.25e-07!61|ontology_enrichment_uberon_v019=UBERON:0002370;6.20e-11;2!UBERON:0005058;6.20e-11;2!UBERON:0009113;6.20e-11;2!UBERON:0004177;4.11e-09;5!UBERON:0005057;4.11e-09;5!UBERON:0000178;2.24e-07;15!UBERON:0000179;2.24e-07;15!UBERON:0000463;2.24e-07;15!UBERON:0002390;5.09e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.77e-11,4;UBERON:0005058,3.77e-11,4;UBERON:0009113,3.77e-11,4;UBERON:0003295,3.77e-11,4;UBERON:0005562,3.77e-11,4;UBERON:0004177,1.39e-10,7;UBERON:0005057,1.39e-10,7;UBERON:0003351,1.43e-07,6;UBERON:0000178,2.37e-07,15;UBERON:0000179,2.37e-07,15;UBERON:0000463,2.37e-07,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0.393364276848904,2.68680578668049,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0.651032612147555,0,0.647787332037959,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0,0.382273228125229,0,0,0,0.590129310341499,0.786021525498329,0.822405995998037,2.50779743086017,1.30368906653436,1.4203434172042,3.89653456815823,1.89397776704795,0.883817722424512,1.32920336750173,2.70803863765016,1.15282187753108,2.08094956095805,2.79544437826249,3.31620021343018,2.89803085735052,0.444859689486181,0.535081656179426,0,0.793165398882963,1.14966148080576,1.71813722741315,1.26509846009751,1.27426165729639,0,2.85135613334512,1.95747654801105,1.15187950038977,1.24930726552346,0.710331756132051,2.46338399076314,0.201606743224732,0.267440195783507,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,0.788123040807709,2.15627574859517,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.431428401637234,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,1.52927441428475,0,0.952927101831156,0,1.29694662238543,1.08006287447623,3.17250070517708,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,1.10513566212459,0,0,0,0,0,0,0,0.394573622547734,4.7896618469388,0,0,0.371072392647405,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0.120596438625408,0,0.331737779793674,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,3.05515072466813,0,0,0,0.337005664903385,0.802577647298789,1.87411556580271,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.387956065953678,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0.314408610199332,0,0.992332043623902,0,0.243585196761792,0,0,0.2506898940227,2.14441903734423,1.31149052283922,0,0,0.366078794705889,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0,0,0,0,4.21501415226193,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0.389720617678777,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0.205116364240755,0,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.380494861163441,0.546974809018219,0.548257766857182,0,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0.109940516745429,0,0.463044948647668,1.5299169235277,0,0.490296643507811,0,0,0.297046400327086,0,0,1.03382309777839,0.515663103788617,0,0,0,0,0,0,0.573358332605805,0,0.203974470572744,0.436350690340377,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0.476128862927481,6.91101335245265,5.27635071514792,0,0,0,0.217716747896961,0,0.606168477131288,0.0717222053926763,0,0,0,0,0,2.34640942403454,0.122241444182866,0,0,1.20764276154616,0|short_description=p1@TRDV3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12264 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=1bp_to_ENST00000535880_5end | |||
|description=CAGE_peak_1_at_TRDV3_5end | |||
|id=chr14:22938665..22938688,- | |||
|ontology_enrichment_celltype=CL:0000791!5.70e-21!18;CL:0000789!5.70e-21!18;CL:0002420!5.70e-21!18;CL:0002419!5.70e-21!18;CL:0000790!5.70e-21!18;CL:0000084!1.43e-13!25;CL:0000827!1.43e-13!25;CL:0000542!6.58e-13!53;CL:0000051!6.58e-13!53;CL:0000625!1.80e-12!11;CL:0000838!2.89e-12!52;CL:0000624!4.07e-09!6;CL:0000738!9.96e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.64e-14;18!CL:0000789;1.64e-14;18!CL:0002419;1.64e-14;18!CL:0000625;4.55e-14;11!CL:0000084;4.23e-10;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.68e-14,18;CL:0000789,1.68e-14,18;CL:0002420,1.68e-14,18;CL:0002419,1.68e-14,18;CL:0000790,1.68e-14,18;CL:0000625,3.97e-14,11;CL:0000084,4.30e-10,25;CL:0000827,4.30e-10,25 | |||
|ontology_enrichment_development_v019=CL:0000790;1.64e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.73e-29!115;UBERON:0001049!3.78e-14!57;UBERON:0005068!3.78e-14!57;UBERON:0006241!3.78e-14!57;UBERON:0007135!3.78e-14!57;UBERON:0002616!2.44e-12!59;UBERON:0002780!5.97e-12!41;UBERON:0001890!5.97e-12!41;UBERON:0006240!5.97e-12!41;UBERON:0003080!1.62e-11!42;UBERON:0002020!2.46e-11!34;UBERON:0003528!2.46e-11!34;UBERON:0001893!2.51e-11!34;UBERON:0002791!1.03e-10!33;UBERON:0000955!5.52e-10!69;UBERON:0006238!5.52e-10!69;UBERON:0001869!9.86e-10!32;UBERON:0001017!3.41e-09!82;UBERON:0005743!4.29e-09!86;UBERON:0000178!9.33e-09!15;UBERON:0000179!9.33e-09!15;UBERON:0000463!9.33e-09!15;UBERON:0002619!1.14e-08!22;UBERON:0003075!1.42e-08!86;UBERON:0007284!1.42e-08!86;UBERON:0002346!1.79e-08!90;UBERON:0004177!6.38e-08!7;UBERON:0000073!1.91e-07!94;UBERON:0001016!1.91e-07!94;UBERON:0000956!2.91e-07!25;UBERON:0000203!2.91e-07!25;UBERON:0001950!4.23e-07!20;UBERON:0002370!4.40e-07!4;UBERON:0005058!4.40e-07!4;UBERON:0009113!4.40e-07!4;UBERON:0003295!4.40e-07!4;UBERON:0005562!4.40e-07!4;UBERON:0000153!4.72e-07!129;UBERON:0007811!4.72e-07!129;UBERON:0003056!8.25e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.20e-11;2!UBERON:0005058;6.20e-11;2!UBERON:0009113;6.20e-11;2!UBERON:0004177;4.11e-09;5!UBERON:0005057;4.11e-09;5!UBERON:0000178;2.24e-07;15!UBERON:0000179;2.24e-07;15!UBERON:0000463;2.24e-07;15!UBERON:0002390;5.09e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.77e-11,4;UBERON:0005058,3.77e-11,4;UBERON:0009113,3.77e-11,4;UBERON:0003295,3.77e-11,4;UBERON:0005562,3.77e-11,4;UBERON:0004177,1.39e-10,7;UBERON:0005057,1.39e-10,7;UBERON:0003351,1.43e-07,6;UBERON:0000178,2.37e-07,15;UBERON:0000179,2.37e-07,15;UBERON:0000463,2.37e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0.393364276848904,2.68680578668049,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0.651032612147555,0,0.647787332037959,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0.426730222566507,0,0.574752439954483,0.661044872784862,0,0,0,0.382273228125229,0,0,0,0.590129310341499,0.786021525498329,0.822405995998037,2.50779743086017,1.30368906653436,1.4203434172042,3.89653456815823,1.89397776704795,0.883817722424512,1.32920336750173,2.70803863765016,1.15282187753108,2.08094956095805,2.79544437826249,3.31620021343018,2.89803085735052,0.444859689486181,0.535081656179426,0,0.793165398882963,1.14966148080576,1.71813722741315,1.26509846009751,1.27426165729639,0,2.85135613334512,1.95747654801105,1.15187950038977,1.24930726552346,0.710331756132051,2.46338399076314,0.201606743224732,0.267440195783507,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.6312121671319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.448340575974109,0.788123040807709,2.15627574859517,0.641715181398742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,0.431428401637234,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.507447609232169,1.52927441428475,0,0.952927101831156,0,1.29694662238543,1.08006287447623,3.17250070517708,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,1.10513566212459,0,0,0,0,0,0,0,0.394573622547734,4.7896618469388,0,0,0.371072392647405,0,0,0,0,0,0,0,0.689486746482929,0,0,0,0.120596438625408,0,0.331737779793674,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,3.05515072466813,0,0,0,0.337005664903385,0.802577647298789,1.87411556580271,0,0,0,0,1.20990716048664,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.387956065953678,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.121499113316049,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0,0,0,0.314408610199332,0,0.992332043623902,0,0.243585196761792,0,0,0.2506898940227,2.14441903734423,1.31149052283922,0,0,0.366078794705889,0,0.573409195690071,0.110929051536852,0.124192805882767,0,0,0,0,0,4.21501415226193,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0.389720617678777,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.256916900385838,0,0.159633859057151,0.205116364240755,0,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.380494861163441,0.546974809018219,0.548257766857182,0,0,0,0,0.336283722218824,0,0,0.177404740325278,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0.109940516745429,0,0.463044948647668,1.5299169235277,0,0.490296643507811,0,0,0.297046400327086,0,0,1.03382309777839,0.515663103788617,0,0,0,0,0,0,0.573358332605805,0,0.203974470572744,0.436350690340377,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310298987585686,0,0.476128862927481,6.91101335245265,5.27635071514792,0,0,0,0.217716747896961,0,0.606168477131288,0.0717222053926763,0,0,0,0,0,2.34640942403454,0.122241444182866,0,0,1.20764276154616,0 | |||
|short_description=p1@TRDV3 | |||
}} |
Revision as of 03:51, 11 September 2013
Short description: | p1@TRDV3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TRDV3_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_ENST00000535880_5end |
EntrezGene: | NA |
HGNC: | 12264 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.68e-14 | 18 |
alpha-beta T cell | 1.68e-14 | 18 |
immature T cell | 1.68e-14 | 18 |
mature T cell | 1.68e-14 | 18 |
immature alpha-beta T cell | 1.68e-14 | 18 |
CD8-positive, alpha-beta T cell | 3.97e-14 | 11 |
T cell | 4.30e-10 | 25 |
pro-T cell | 4.30e-10 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.77e-11 | 4 |
hemolymphoid system gland | 3.77e-11 | 4 |
thymic region | 3.77e-11 | 4 |
pharyngeal gland | 3.77e-11 | 4 |
thymus primordium | 3.77e-11 | 4 |
hemopoietic organ | 1.39e-10 | 7 |
immune organ | 1.39e-10 | 7 |
pharyngeal epithelium | 1.43e-07 | 6 |
blood | 2.37e-07 | 15 |
haemolymphatic fluid | 2.37e-07 | 15 |
organism substance | 2.37e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.