FFCP PHASE1:Hg19::chr8:23700042..23700103,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6781 | |EntrezGene=6781 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11373 | |HGNC=11373 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-25bp_to_S50179_5end | |association_with_transcript=-25bp_to_S50179_5end | ||
|cluster_id=chr8:23700042..23700103,- | |||
|coexpression_cluster_id=C960 | |coexpression_cluster_id=C960 | ||
|description=CAGE_peak_4_at_STC1_5end | |description=CAGE_peak_4_at_STC1_5end | ||
|id=chr8:23700042..23700103,- | |id=chr8:23700042..23700103,- | ||
|ontology_enrichment_celltype=CL:0000055!9.38e-18!180;CL:0000680!2.04e-10!57;CL:0000056!2.04e-10!57;CL:0000355!2.04e-10!57;CL:0000393!5.91e-10!60;CL:0000211!5.91e-10!60;CL:0000187!1.60e-09!54;CL:0000192!2.12e-09!42;CL:0000514!2.12e-09!42;CL:0000359!3.30e-09!32;CL:0000183!8.50e-09!59;CL:0002539!2.11e-07!10 | |ontology_enrichment_celltype=CL:0000055!9.38e-18!180;CL:0000680!2.04e-10!57;CL:0000056!2.04e-10!57;CL:0000355!2.04e-10!57;CL:0000393!5.91e-10!60;CL:0000211!5.91e-10!60;CL:0000187!1.60e-09!54;CL:0000192!2.12e-09!42;CL:0000514!2.12e-09!42;CL:0000359!3.30e-09!32;CL:0000183!8.50e-09!59;CL:0002539!2.11e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000359;5.62e-13;32!CL:0002539;6.53e-09;10!CL:0000192;1.22e-07;43!CL:0002552;4.80e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,7.35e-13,32;CL:0000192,2.84e-10,43;CL:0000514,2.84e-10,43;CL:0000393,1.53e-09,61;CL:0000211,1.53e-09,61;CL:0000680,1.73e-09,58;CL:0000056,1.73e-09,58;CL:0000355,1.73e-09,58;CL:0002539,6.00e-09,10;CL:0000187,1.40e-08,55;CL:0002552,3.04e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000514;1.22e-07;43 | |||
|ontology_enrichment_disease=DOID:2394!3.32e-10!14;DOID:193!5.29e-09!29;DOID:120!6.88e-09!27 | |ontology_enrichment_disease=DOID:2394!3.32e-10!14;DOID:193!5.29e-09!29;DOID:120!6.88e-09!27 | ||
|ontology_enrichment_disease_v019=DOID:2394;4.69e-14;14!DOID:120;2.86e-12;27!DOID:193;4.50e-11;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,5.32e-14,14;DOID:120,2.41e-12,27;DOID:193,3.85e-11,29 | |||
|ontology_enrichment_uberon=UBERON:0002100!4.60e-12!216;UBERON:0005256!9.83e-11!143;UBERON:0004290!1.16e-10!70;UBERON:0000914!2.48e-10!83;UBERON:0002329!2.48e-10!83;UBERON:0003077!2.48e-10!83;UBERON:0003059!2.48e-10!83;UBERON:0007282!2.48e-10!83;UBERON:0009618!2.48e-10!83;UBERON:0007285!2.48e-10!83;UBERON:0000475!2.68e-10!365;UBERON:0001134!5.29e-10!61;UBERON:0002036!5.29e-10!61;UBERON:0003082!5.29e-10!61;UBERON:0002385!1.41e-09!63;UBERON:0001015!1.41e-09!63;UBERON:0000383!1.41e-09!63;UBERON:0000486!2.87e-09!82;UBERON:0001637!4.64e-09!42;UBERON:0003509!4.64e-09!42;UBERON:0004572!4.64e-09!42;UBERON:0004573!7.97e-09!33;UBERON:0004571!7.97e-09!33;UBERON:0000490!2.86e-08!138;UBERON:0001981!1.10e-07!60;UBERON:0007500!1.10e-07!60;UBERON:0004537!1.10e-07!60;UBERON:0006965!1.10e-07!60;UBERON:0004237!2.11e-07!10;UBERON:0004695!2.11e-07!10;UBERON:0002111!2.11e-07!10;UBERON:0004178!2.11e-07!10;UBERON:0000468!2.56e-07!659;UBERON:0000992!7.66e-07!13 | |ontology_enrichment_uberon=UBERON:0002100!4.60e-12!216;UBERON:0005256!9.83e-11!143;UBERON:0004290!1.16e-10!70;UBERON:0000914!2.48e-10!83;UBERON:0002329!2.48e-10!83;UBERON:0003077!2.48e-10!83;UBERON:0003059!2.48e-10!83;UBERON:0007282!2.48e-10!83;UBERON:0009618!2.48e-10!83;UBERON:0007285!2.48e-10!83;UBERON:0000475!2.68e-10!365;UBERON:0001134!5.29e-10!61;UBERON:0002036!5.29e-10!61;UBERON:0003082!5.29e-10!61;UBERON:0002385!1.41e-09!63;UBERON:0001015!1.41e-09!63;UBERON:0000383!1.41e-09!63;UBERON:0000486!2.87e-09!82;UBERON:0001637!4.64e-09!42;UBERON:0003509!4.64e-09!42;UBERON:0004572!4.64e-09!42;UBERON:0004573!7.97e-09!33;UBERON:0004571!7.97e-09!33;UBERON:0000490!2.86e-08!138;UBERON:0001981!1.10e-07!60;UBERON:0007500!1.10e-07!60;UBERON:0004537!1.10e-07!60;UBERON:0006965!1.10e-07!60;UBERON:0004237!2.11e-07!10;UBERON:0004695!2.11e-07!10;UBERON:0002111!2.11e-07!10;UBERON:0004178!2.11e-07!10;UBERON:0000468!2.56e-07!659;UBERON:0000992!7.66e-07!13 | ||
|ontology_enrichment_uberon_v019=UBERON:0004237;6.53e-09;10!UBERON:0004695;6.53e-09;10!UBERON:0002111;6.53e-09;10!UBERON:0004178;6.53e-09;10!UBERON:0000992;1.63e-08;13!UBERON:0004573;7.41e-08;33!UBERON:0004571;7.41e-08;33!UBERON:0002119;2.95e-07;4!UBERON:0003134;5.65e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,8.45e-10,71;UBERON:0003059,8.45e-10,71;UBERON:0007282,8.45e-10,71;UBERON:0004290,8.45e-10,71;UBERON:0009618,8.45e-10,71;UBERON:0007503,1.22e-09,78;UBERON:0003077,1.50e-09,72;UBERON:0007285,1.50e-09,72;UBERON:0007524,2.62e-09,73;UBERON:0001134,3.31e-09,62;UBERON:0002036,3.31e-09,62;UBERON:0003082,3.31e-09,62;UBERON:0004237,6.00e-09,10;UBERON:0004695,6.00e-09,10;UBERON:0002111,6.00e-09,10;UBERON:0004178,6.00e-09,10;UBERON:0002385,1.08e-08,64;UBERON:0001015,1.08e-08,64;UBERON:0000383,1.08e-08,64;UBERON:0000992,1.70e-08,13;UBERON:0001637,1.72e-08,42;UBERON:0003509,1.72e-08,42;UBERON:0004572,1.72e-08,42;UBERON:0000486,5.92e-08,83;UBERON:0004573,7.14e-08,33;UBERON:0004571,7.14e-08,33;UBERON:0002119,3.02e-07,4;UBERON:0005256,4.55e-07,122 | |||
|phase1_expression=0.363356758541113,2.78330681058278,2.96004248601539,3.00219895059391,0,4.36169262050184,0,6.31719873426831,0,0.982935746006035,0,0.873765488520689,0,0.618831764800233,0.331397375727916,3.36162573225888,7.23233433628772,6.57279081348636,6.34312638427659,0,0.204000691244253,0,0.286235987131057,0,0.376627918784408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0.361439152384566,2.00535164254356,4.34539556882471,0,0.486634870302636,0.189069634328136,0.443458794925128,0.175669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0.516833518338658,0.35576626268671,0,0,0.760272105718513,0,0.367663080345869,0.81014194788176,0.0892997282840798,0,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0,1.32409180813219,0.286836620748814,0.709336764396714,0.560677600142307,0,0,0,0.134710672069688,0.163461903113459,0.151357427644931,1.72852777344,0,16.544484072007,1.71141546463335,20.0261231939413,0.704606991862589,0.161872944368132,0.140450806702248,3.87892925384297,1.47401180774122,1.75653827998801,3.56400857184616,4.20353779773547,0,0,1.17835279767846,1.00094815897571,0.277064115484183,0.438977620880838,0,19.0802334811378,0.226864366320042,0,0.427114777637135,1.48352330811693,0,0.206105058476878,0,0.558350568994769,0.168776332241266,0.292311015483596,0,0.184099797284599,0.323292113637624,0,0,0.508681776931463,0,0.545492241181669,0,0.121973706129595,0.132529768321485,1.04574548582567,0.829288440122964,0.756962552626885,0.36497735907583,0,0,0,13.9310378409594,9.38443326170461,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,0,0.122988438543114,1.3725424823882,0.109750285408626,0,0,0,0,0,4.3299402607582,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,1.52394946301206,0,0,1.71072446022705,0.102827492703324,0,0,0.560655421726804,0,5.79372457985505,0.387815147273333,0,2.535908257668,0,1.04007436911366,0.514414748524284,1.41849132023278,0,0.57191197463259,0,0,1.30294473717494,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0,0,9.98458335285029,1.01346914667305,3.49309748335652,0.179060963239896,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,1.34960640891054,2.00068208423871,1.62759014219841,3.74347550755453,0.713715955188647,0.157702415033935,1.7571212248907,0.601892199455438,0,0,0,0.737476674166813,1.91143951829782,0,0.343143423810856,0,0,0,0,0,0,0,1.2276957863045,0,1.66580894032411,1.02341449813341,0.321707842287215,0,3.70103265126373,1.77561725313127,3.77784917663522,12.9813607295905,8.36714724911707,0,0.40101294060657,0,0.803701137152247,1.0925470080403,0.524497659837696,0,0.308061348417659,0,0,0.316654886678627,0,1.19065593693561,0.431831832204279,1.54227252690289,0,0,0,1.66215201785745,0,0,0,1.02580050046556,0,0,0.309123034943167,0,0,0,0,1.6068392984416,0.290012154876366,0.924291702687866,0.307007349452259,1.92971201478343,0,0,0.93749290157711,0.0890320356467374,0.165284915360978,0.192190067365106,0,0.10115778085555,0.929691098594572,3.46293581513704,2.7881490806424,1.54016790088044,0.532306030317022,7.82939692867565,2.22389062924704,0.715624433709956,1.116475108079,0,0,0,0,0.95460974377781,0,0.539617372749944,0.274537029736055,0.353437207037059,1.2130948894399,0,4.63384301862879,0,15.1102363571396,6.33900880540533,1.22849920267187,0.282810863907425,1.13008116620243,0,11.2784625791007,6.13831239355268,0.578775534266688,0,0.405820753925408,1.54911749049875,1.12678241012897,0,0,1.07001315444375,7.09522128141196,2.11107635297664,0.658589785919804,0,0,0,0,1.08890984861323,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0.284136146806413,3.10367830158997,1.48482340416319,1.84296421259539,0,0.140669416410513,2.22617410045812,0,0,0.398495976502139,0,0.251932747854276,0.102268682502155,0,0.311039587661807,0,0.358042349351218,0,1.38100767891707,0,0,0,0.0927680981618513,0,4.94812746061943,0.962059999958153,0,0,0,0.472775363535873,0.689486746482929,1.74962768029953,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0.139423744278603,0.307801034015188,0.569710279235006,0,0,0.108647371922008,2.23300811812344,0.274792780205587,1.06606955203727,0,0,0,0,0,0,0,0,0.421996129056054,9.14103725691227,0,0,0,0.176915129006678,1.22206028986725,0.296521128680622,0,0,0.067401132980677,0,0.234264445725339,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0.664653872707185,1.65495977937749,0.627865836814451,0,4.26914319044689,3.05084280628905,0,0,0,0.34945333648406,0,0.0967563312890851,0,0,0.193978032976839,0,1.80784592624426,8.77068317739206,20.268890393705,0,0.195551382734803,0.160317640503067,0,0.19980960958213,0,0,0,15.7019729807083,0.372757606696298,1.64985824231757,1.22313785466253,0.941425616810999,1.73396969981747,0.577901179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| ||
|short_description=p4@STC1 | |short_description=p4@STC1 | ||
}} | }} |
Latest revision as of 14:47, 17 September 2015
Short description: | p4@STC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_STC1_5end |
Coexpression cluster: | C960_Preadipocyte_giant_Smooth_Fibroblast_fibrous_mesenchymal_Meningeal |
Association with transcript: | -25bp_to_S50179_5end |
EntrezGene: | STC1 |
HGNC: | 11373 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 7.35e-13 | 32 |
smooth muscle cell | 2.84e-10 | 43 |
smooth muscle myoblast | 2.84e-10 | 43 |
electrically responsive cell | 1.53e-09 | 61 |
electrically active cell | 1.53e-09 | 61 |
muscle precursor cell | 1.73e-09 | 58 |
myoblast | 1.73e-09 | 58 |
multi-potent skeletal muscle stem cell | 1.73e-09 | 58 |
aortic smooth muscle cell | 6.00e-09 | 10 |
muscle cell | 1.40e-08 | 55 |
fibroblast of gingiva | 3.04e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
somite | 8.45e-10 | 71 |
presomitic mesoderm | 8.45e-10 | 71 |
presumptive segmental plate | 8.45e-10 | 71 |
dermomyotome | 8.45e-10 | 71 |
trunk paraxial mesoderm | 8.45e-10 | 71 |
epithelial vesicle | 1.22e-09 | 78 |
paraxial mesoderm | 1.50e-09 | 72 |
presumptive paraxial mesoderm | 1.50e-09 | 72 |
dense mesenchyme tissue | 2.62e-09 | 73 |
skeletal muscle tissue | 3.31e-09 | 62 |
striated muscle tissue | 3.31e-09 | 62 |
myotome | 3.31e-09 | 62 |
blood vessel smooth muscle | 6.00e-09 | 10 |
arterial system smooth muscle | 6.00e-09 | 10 |
artery smooth muscle tissue | 6.00e-09 | 10 |
aorta smooth muscle tissue | 6.00e-09 | 10 |
muscle tissue | 1.08e-08 | 64 |
musculature | 1.08e-08 | 64 |
musculature of body | 1.08e-08 | 64 |
female gonad | 1.70e-08 | 13 |
artery | 1.72e-08 | 42 |
arterial blood vessel | 1.72e-08 | 42 |
arterial system | 1.72e-08 | 42 |
multilaminar epithelium | 5.92e-08 | 83 |
systemic artery | 7.14e-08 | 33 |
systemic arterial system | 7.14e-08 | 33 |
left ovary | 3.02e-07 | 4 |
trunk mesenchyme | 4.55e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 5.32e-14 | 14 |
female reproductive organ cancer | 2.41e-12 | 27 |
reproductive organ cancer | 3.85e-11 | 29 |