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MCL coexpression mm9:1933: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000181!1.10e-07!5;CL:0000417!1.10e-07!5;CL:0000668!1.10e-07!5;CL:0000412!1.10e-07!5;CL:0000182!1.10e-07!5
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0009569!2.05e-19!66;UBERON:0002107!7.51e-17!22;UBERON:0007499!7.51e-17!22;UBERON:0006925!7.51e-17!22;UBERON:0009497!7.51e-17!22;UBERON:0000015!7.51e-17!22;UBERON:0002423!7.51e-17!22;UBERON:0006235!7.51e-17!22;UBERON:0008835!7.51e-17!22;UBERON:0003894!7.51e-17!22;UBERON:0004161!7.51e-17!22;UBERON:0008836!7.51e-17!22;UBERON:0009854!7.31e-16!23;UBERON:0009856!7.31e-16!23;UBERON:0002365!8.83e-16!25;UBERON:0002330!8.83e-16!25;UBERON:0005177!2.44e-15!79;UBERON:0003914!9.57e-15!47;UBERON:0005172!4.03e-13!49;UBERON:0005173!4.03e-13!49;UBERON:0002417!4.03e-13!49;UBERON:0000916!4.03e-13!49;UBERON:0005256!1.17e-12!45;UBERON:0002100!4.59e-12!90;UBERON:0003104!9.36e-10!61;UBERON:0009142!9.36e-10!61;UBERON:0002048!8.06e-09!14;UBERON:0000117!8.06e-09!14;UBERON:0000171!8.06e-09!14;UBERON:0000170!8.06e-09!14;UBERON:0005597!8.06e-09!14;UBERON:0000118!8.06e-09!14;UBERON:0005911!1.12e-08!69;UBERON:0000466!1.31e-08!79;UBERON:0002369!1.63e-08!7;UBERON:0006858!1.63e-08!7;UBERON:0001041!2.56e-08!80;UBERON:0005153!4.10e-08!17;UBERON:0000025!4.15e-08!114;UBERON:0002368!1.15e-07!60;UBERON:0004111!1.96e-07!122;UBERON:0001048!2.23e-07!134;UBERON:0002530!2.97e-07!65;UBERON:0000475!3.62e-07!150;UBERON:0005178!8.72e-07!17;UBERON:0005181!8.72e-07!17;UBERON:0002224!8.72e-07!17;UBERON:0000915!8.72e-07!17;UBERON:0008947!8.72e-07!17;UBERON:0003258!8.72e-07!17
}}
}}

Revision as of 17:40, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:98733076..98733082,-p@chr10:98733076..98733082
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Mm9::chr1:164796556..164796563,-p12@Fmo1
Mm9::chr1:164796571..164796582,-p11@Fmo1
Mm9::chr1:164796614..164796632,-p6@Fmo1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell1.10e-075
endopolyploid cell1.10e-075
parenchymal cell1.10e-075
polyploid cell1.10e-075
hepatocyte1.10e-075

Uber Anatomy
Ontology termp-valuen
subdivision of trunk2.05e-1966
liver7.51e-1722
epithelial sac7.51e-1722
digestive gland7.51e-1722
epithelium of foregut-midgut junction7.51e-1722
anatomical boundary7.51e-1722
hepatobiliary system7.51e-1722
foregut-midgut junction7.51e-1722
hepatic diverticulum7.51e-1722
liver primordium7.51e-1722
septum transversum7.51e-1722
liver bud7.51e-1722
digestive tract diverticulum7.31e-1623
sac7.31e-1623
exocrine gland8.83e-1625
exocrine system8.83e-1625
trunk region element2.44e-1579
epithelial tube9.57e-1547
abdomen element4.03e-1349
abdominal segment element4.03e-1349
abdominal segment of trunk4.03e-1349
abdomen4.03e-1349
trunk mesenchyme1.17e-1245
trunk4.59e-1290
mesenchyme9.36e-1061
entire embryonic mesenchyme9.36e-1061
lung8.06e-0914
respiratory tube8.06e-0914
respiration organ8.06e-0914
pair of lungs8.06e-0914
lung primordium8.06e-0914
lung bud8.06e-0914
endo-epithelium1.12e-0869
immaterial anatomical entity1.31e-0879
adrenal gland1.63e-087
adrenal/interrenal gland1.63e-087
foregut2.56e-0880
epithelial bud4.10e-0817
tube4.15e-08114
endocrine gland1.15e-0760
anatomical conduit1.96e-07122
primordium2.23e-07134
gland2.97e-0765
organism subdivision3.62e-07150
thoracic cavity element8.72e-0717
thoracic segment organ8.72e-0717
thoracic cavity8.72e-0717
thoracic segment of trunk8.72e-0717
respiratory primordium8.72e-0717
endoderm of foregut8.72e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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