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UBERON:0001004

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Name:respiratory system
Namespace:FANTOM
Definition:"Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system]
Xrefs:
links:

AAO:0000541
BTO:0000203
EFO:0000804
EHDAA2:0001604
EHDAA:2203
EMAPA:16727
EV:0100036
FMA:7158
GAID:78
[1]
[ 200px-Respiratory_system_complete_en.svg.png 200px-Respiratory_system_complete_en.svg.png]
MA:0000327
MAT:0000030
MESH:A.04
MIAA:0000030
ncithesaurus:Respiratory_System
OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA
SCTID:278197002
TAO:0000272
VHOG:0000202
XAO:0000117

ZFA:0000272
Synonyms: "apparatus respiratorius" EXACT []
"apparatus respiratorius " RELATED [BTO:0000203]
"Atmungssystem" RELATED [BTO:0000203]
"respiratory system" EXACT []
"systema respiratorium" RELATED LATIN [Wikipedia:Respiratory_system]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272
Subset: functional_classification
uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000467(anatomical system)
disjoint_from:UBERON:0001007(digestive system),UBERON:0001008(renal system),UBERON:0001009(circulatory system),UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system)



Children

disjoint from:UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system)
part of:UBERON:0000004 (olfactory apparatus),UBERON:0000065 (respiratory tract),UBERON:0000171 (respiration organ),UBERON:0001005 (respiratory airway),UBERON:0001042 (chordate pharynx),UBERON:0001103 (diaphragm),UBERON:0001825 (paranasal sinus),UBERON:0003469 (respiratory system artery),UBERON:0003504 (respiratory system blood vessel),UBERON:0003643 (respiratory system arterial blood vessel),UBERON:0003831 (respiratory system muscle),UBERON:0004225 (respiratory system smooth muscle),UBERON:0004785 (respiratory system mucosa),UBERON:0004807 (respiratory system epithelium),UBERON:0004830 (respiratory system skeletal muscle),UBERON:0004903 (bronchoalveolar duct junction)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001004 (respiratory system), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.75e-39FFCP PHASE1:Mm9::chr2:26212358..26212425,-#_4f841e863c09055763712acac43eb819p@chr2:26212358..26212425, -
1.75e-39FFCP PHASE2:Mm9::chr2:26212358..26212425,-#_4f841e863c09055763712acac43eb819p@chr2:26212358..26212425, -
6.87e-38FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_b80633d4a4f18f740684cefc904d5d43p2@ALDH3A1
6.87e-38FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_b80633d4a4f18f740684cefc904d5d43p2@ALDH3A1
3.62e-36FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_90f848660a33c0b6e32e095049e920b3p4@uc009bpa.1
3.62e-36FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_90f848660a33c0b6e32e095049e920b3p4@uc009bpa.1
5.83e-36FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_3b5b4fa891ee5c5126760f7560b71237p8@uc009bpa.1
5.83e-36FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_3b5b4fa891ee5c5126760f7560b71237p8@uc009bpa.1
1.54e-34FFCP PHASE2:Mm9::chr6:41485075..41485096,+#_56127415c5639172962772b0c9b478fdp1@ENSMUST00000103288, p1@uc009bpl.1
1.54e-34FFCP PHASE1:Mm9::chr6:41485075..41485096,+#_56127415c5639172962772b0c9b478fdp1@ENSMUST00000103288, p1@uc009bpl.1
2.37e-34FFCP PHASE2:Mm9::chr11:52095797..52095809,-#_0e6db7152fbf0ccc34ad5e1271f30bb1p5@Tcf7
2.37e-34FFCP PHASE1:Mm9::chr11:52095797..52095809,-#_0e6db7152fbf0ccc34ad5e1271f30bb1p5@Tcf7
2.86e-34FFCP PHASE2:Hg19::chr17:19651598..19651620,-#_f8d8943866d2d27db87fe2e3d2f41b11p1@ALDH3A1
2.86e-34FFCP PHASE1:Hg19::chr17:19651598..19651620,-#_f8d8943866d2d27db87fe2e3d2f41b11p1@ALDH3A1
3.22e-34FFCP PHASE1:Mm9::chr6:124838183..124838199,-#_9c9f9d5cb9bb20fea98297b606d29550p2@Cd4
3.22e-34FFCP PHASE2:Mm9::chr6:124838183..124838199,-#_9c9f9d5cb9bb20fea98297b606d29550p2@Cd4
4.88e-34FFCP PHASE1:Mm9::chr12:108361918..108361930,-#_97b4c85e61c72d50ecb79bc6d2e45444p@chr12:108361918..108361930, -
4.88e-34FFCP PHASE2:Mm9::chr12:108361918..108361930,-#_97b4c85e61c72d50ecb79bc6d2e45444p@chr12:108361918..108361930, -
4.88e-34FFCP PHASE2:Mm9::chr6:41491752..41491776,-#_97b4c85e61c72d50ecb79bc6d2e45444p@chr6:41491752..41491776, -
4.88e-34FFCP PHASE1:Mm9::chr6:41491752..41491776,-#_97b4c85e61c72d50ecb79bc6d2e45444p@chr6:41491752..41491776, -
5.45e-34FFCP PHASE1:Mm9::chr6:33991787..33991793,-#_e358035bdc4f8e478730ee586d91e6e6p@chr6:33991787..33991793, -
5.45e-34FFCP PHASE2:Mm9::chr6:33991787..33991793,-#_e358035bdc4f8e478730ee586d91e6e6p@chr6:33991787..33991793, -
4.58e-33FFCP PHASE2:Mm9::chr6:41483173..41483188,+#_86791a9f0c8c1bcbb7cd44a705df83f9p2@ENSMUST00000103283
4.58e-33FFCP PHASE1:Mm9::chr6:41483173..41483188,+#_86791a9f0c8c1bcbb7cd44a705df83f9p2@ENSMUST00000103283
5.19e-33FFCP PHASE2:Mm9::chr6:41484803..41484826,+#_74658944c200768506b08ba24029b0e7p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
5.19e-33FFCP PHASE1:Mm9::chr6:41484803..41484826,+#_74658944c200768506b08ba24029b0e7p1@ENSMUST00000103287, p1@uc009bpi.1, p1@uc009bpj.1
1.75e-32FFCP PHASE2:Mm9::chr6:41494001..41494028,+#_b66872afbb21b75a924b913185b81228p@chr6:41494001..41494028, +
1.75e-32FFCP PHASE1:Mm9::chr6:41494001..41494028,+#_b66872afbb21b75a924b913185b81228p@chr6:41494001..41494028, +
2.21e-32FFCP PHASE2:Mm9::chr7:25692688..25692751,+#_5f3e2f7659130c24b4399fbaad676968p5@Arhgef1
2.21e-32FFCP PHASE1:Mm9::chr7:25692688..25692751,+#_5f3e2f7659130c24b4399fbaad676968p5@Arhgef1
2.32e-32FFCP PHASE2:Mm9::chr9:44807434..44807445,-#_1285009a5b9a41854e1875d2d22a6d95p@chr9:44807434..44807445, -
2.32e-32FFCP PHASE1:Mm9::chr9:44807434..44807445,-#_1285009a5b9a41854e1875d2d22a6d95p@chr9:44807434..44807445, -
2.56e-32FFCP PHASE2:Mm9::chr6:41484314..41484337,+#_a81d898ad2cbb75ddaeaab967ddd564ap1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
2.56e-32FFCP PHASE1:Mm9::chr6:41484314..41484337,+#_a81d898ad2cbb75ddaeaab967ddd564ap1@ENSMUST00000103286, p1@uc009bpg.1, p1@uc009bph.1
2.6e-32FFCP PHASE1:Mm9::chr12:74842928..74842966,+#_8e46d406dbb1dae1c94046508e4a47adp@chr12:74842928..74842966, +
2.6e-32FFCP PHASE2:Mm9::chr12:74842928..74842966,+#_8e46d406dbb1dae1c94046508e4a47adp@chr12:74842928..74842966, +
2.94e-32FFCP PHASE1:Mm9::chr2:11093788..11093799,+#_3c614ab6c4ce2b7433a27dbc638a41f9p11@Prkcq
2.94e-32FFCP PHASE2:Mm9::chr2:11093788..11093799,+#_3c614ab6c4ce2b7433a27dbc638a41f9p11@Prkcq
3.0e-32FFCP PHASE2:Mm9::chr6:41493801..41493826,+#_2f3ea996a06ceec1564af4158fc17672p1@ENSMUST00000103298, p1@uc009bpy.1
3.0e-32FFCP PHASE1:Mm9::chr6:41493801..41493826,+#_2f3ea996a06ceec1564af4158fc17672p1@ENSMUST00000103298, p1@uc009bpy.1
3.55e-32FFCP PHASE2:Mm9::chr14:54791784..54791787,+#_dc33cc3a81f38c1fd3404b09b246d4c0p@chr14:54791784..54791787, +
3.55e-32FFCP PHASE1:Mm9::chr14:54791784..54791787,+#_dc33cc3a81f38c1fd3404b09b246d4c0p@chr14:54791784..54791787, +
3.64e-32FFCP PHASE2:Mm9::chr6:41492605..41492621,+#_55102f4c04d6717bc9336670db2fc91ep@chr6:41492605..41492621, +
3.64e-32FFCP PHASE1:Mm9::chr6:41492605..41492621,+#_55102f4c04d6717bc9336670db2fc91ep@chr6:41492605..41492621, +
4.3e-32FFCP PHASE1:Mm9::chr9:44809185..44809215,-#_2fe5fa914704c7e3b5ec5ae829cce4eap@chr9:44809185..44809215, -
4.3e-32FFCP PHASE2:Mm9::chr9:44809185..44809215,-#_2fe5fa914704c7e3b5ec5ae829cce4eap@chr9:44809185..44809215, -
4.87e-32FFCP PHASE2:Mm9::chr6:40997465..40997489,+#_2e0b4a899dcfb150dff95650fabee0a3p1@ENSMUST00000103263
4.87e-32FFCP PHASE1:Mm9::chr6:40997465..40997489,+#_2e0b4a899dcfb150dff95650fabee0a3p1@ENSMUST00000103263
5.15e-32FFCP PHASE2:Mm9::chr9:44793518..44793537,+#_28b4a91ae5c5d621345f149d0caebac4p@chr9:44793518..44793537, +
5.15e-32FFCP PHASE1:Mm9::chr9:44793518..44793537,+#_28b4a91ae5c5d621345f149d0caebac4p@chr9:44793518..44793537, +
5.94e-32FFCP PHASE2:Mm9::chr6:41071548..41071565,+#_ef577a5497d0b19988ae2bef7b13f204p@chr6:41071548..41071565, +
5.94e-32FFCP PHASE1:Mm9::chr6:41071548..41071565,+#_ef577a5497d0b19988ae2bef7b13f204+, p@chr6:41071548..41071565
7.75e-32FFCP PHASE2:Mm9::chr6:41483853..41483880,+#_bc7dd5ac3ee8bbc4e823aba330094d72p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1
7.75e-32FFCP PHASE1:Mm9::chr6:41483853..41483880,+#_bc7dd5ac3ee8bbc4e823aba330094d72p1@ENSMUST00000103284, p1@uc009bpb.1, p1@uc009bpc.1, p1@uc009bpd.1, p1@uc009bpe.1
1.06e-31FFCP PHASE1:Mm9::chr10:28388454..28388458,+#_d32e588b6475e5af0f9d3b41bc46a2bbp5@Themis
1.06e-31FFCP PHASE2:Mm9::chr10:28388454..28388458,+#_d32e588b6475e5af0f9d3b41bc46a2bbp5@Themis
1.15e-31FFCP PHASE2:Mm9::chr6:41482920..41482933,+#_e4afc4233e08434d23a50ae9f2fe8bb0p5@uc009bpa.1
1.15e-31FFCP PHASE1:Mm9::chr6:41482920..41482933,+#_e4afc4233e08434d23a50ae9f2fe8bb0p5@uc009bpa.1
1.36e-31FFCP PHASE2:Mm9::chr6:40997323..40997349,+#_76624de75a53a110ad30f9fdacd421d5p2@uc009bnp.1, p2@uc012eki.1
1.36e-31FFCP PHASE1:Mm9::chr6:40997323..40997349,+#_76624de75a53a110ad30f9fdacd421d5p2@uc009bnp.1, p2@uc012eki.1
1.4e-30FFCP PHASE1:Mm9::chr14:61328148..61328173,+#_e242cf8a0c7b67b8ddbc58f8d0d94c48p@chr14:61328148..61328173, +
1.4e-30FFCP PHASE2:Mm9::chr14:61328148..61328173,+#_e242cf8a0c7b67b8ddbc58f8d0d94c48p@chr14:61328148..61328173, +
1.77e-30FFCP PHASE2:Mm9::chr6:41128981..41128995,+#_c04166a4ebecaeb6710653795ad96da9p1@uc012ekr.1
1.77e-30FFCP PHASE1:Mm9::chr6:41128981..41128995,+#_c04166a4ebecaeb6710653795ad96da9p1@uc012ekr.1
2.01e-30FFCP PHASE2:Mm9::chr6:40841675..40841691,+#_74bba1fc34402356d5a982dbacf7b775p2@1810009J06Rik
2.01e-30FFCP PHASE1:Mm9::chr6:40841675..40841691,+#_74bba1fc34402356d5a982dbacf7b775p2@1810009J06Rik
2.38e-30FFCP PHASE2:Mm9::chr11:52067405..52067434,-#_9135f8347180318b24be7fd50f4c0f46-, p@chr11:52067405..52067434
2.38e-30FFCP PHASE1:Mm9::chr11:52067405..52067434,-#_9135f8347180318b24be7fd50f4c0f46p@chr11:52067405..52067434, -
2.41e-30FFCP PHASE2:Hg19::chr14:37131058..37131139,+#_7c2d2a81ae0617205273b4cc77d25fd9p1@PAX9
2.41e-30FFCP PHASE1:Hg19::chr14:37131058..37131139,+#_7c2d2a81ae0617205273b4cc77d25fd9p1@PAX9
2.49e-30FFCP PHASE2:Mm9::chr6:41066036..41066054,+#_176eaeb53a334fced44f289d2b0a10bfp1@uc012ekk.1
2.49e-30FFCP PHASE1:Mm9::chr6:41066036..41066054,+#_176eaeb53a334fced44f289d2b0a10bfp1@uc012ekk.1
2.71e-30FFCP PHASE2:Mm9::chr6:41009432..41009454,+#_9f16aa5101eb60b9d19aa5512cba1ffep1@ENSMUST00000103265
2.71e-30FFCP PHASE2:Mm9::chr6:41491943..41491953,+#_9f16aa5101eb60b9d19aa5512cba1ffep3@uc009bpo.1, p3@uc009bpp.1
2.71e-30FFCP PHASE1:Mm9::chr6:41009432..41009454,+#_9f16aa5101eb60b9d19aa5512cba1ffep1@ENSMUST00000103265
2.71e-30FFCP PHASE1:Mm9::chr6:41491943..41491953,+#_9f16aa5101eb60b9d19aa5512cba1ffep3@uc009bpo.1, p3@uc009bpp.1
2.77e-30FFCP PHASE2:Mm9::chr7:133512043..133512060,-#_edab2b5e7f9d9a417196f37cfafe48d2p@chr7:133512043..133512060, -
2.77e-30FFCP PHASE1:Mm9::chr7:133512043..133512060,-#_edab2b5e7f9d9a417196f37cfafe48d2p@chr7:133512043..133512060, -
3.2e-30FFCP PHASE2:Mm9::chr6:41483016..41483036,+#_df750dd8c72a8c49ae0594517decb629p2@uc009bpa.1
3.2e-30FFCP PHASE1:Mm9::chr6:41483016..41483036,+#_df750dd8c72a8c49ae0594517decb629p2@uc009bpa.1
3.45e-30FFCP PHASE2:Mm9::chrX:39855684..39855699,+#_af92e727164e468a3bda30d00743f6e7p2@Sh2d1a
3.45e-30FFCP PHASE1:Mm9::chrX:39855684..39855699,+#_af92e727164e468a3bda30d00743f6e7p2@Sh2d1a
3.95e-30FFCP PHASE2:Mm9::chr16:48772258..48772270,-#_09fb907181798c7bdc25840b9c09896cp5@Trat1
3.95e-30FFCP PHASE1:Mm9::chr16:48772258..48772270,-#_09fb907181798c7bdc25840b9c09896cp5@Trat1
4.08e-30FFCP PHASE1:Mm9::chr7:137789187..137789206,+#_61d87707485f6e3b82d2d8ad9a4fa762p@chr7:137789187..137789206, +
4.08e-30FFCP PHASE2:Mm9::chr7:137789187..137789206,+#_61d87707485f6e3b82d2d8ad9a4fa762p@chr7:137789187..137789206, +
4.47e-30FFCP PHASE2:Mm9::chr7:133512935..133512936,-#_5b936b4cd8d41d26c1baa9eb4a568db4p8@Lat
4.47e-30FFCP PHASE1:Mm9::chr4:125978325..125978339,-#_5b936b4cd8d41d26c1baa9eb4a568db4p@chr4:125978325..125978339, -
4.47e-30FFCP PHASE2:Mm9::chr11:87627824..87627837,-#_5b936b4cd8d41d26c1baa9eb4a568db4p@chr11:87627824..87627837, -
4.47e-30FFCP PHASE1:Mm9::chr11:87627824..87627837,-#_5b936b4cd8d41d26c1baa9eb4a568db4p@chr11:87627824..87627837, -
4.47e-30FFCP PHASE2:Mm9::chr6:41483146..41483158,+#_5b936b4cd8d41d26c1baa9eb4a568db4p6@uc009bpa.1
4.47e-30FFCP PHASE1:Mm9::chr6:41483146..41483158,+#_5b936b4cd8d41d26c1baa9eb4a568db4p6@uc009bpa.1
4.47e-30FFCP PHASE1:Mm9::chr7:133512935..133512936,-#_5b936b4cd8d41d26c1baa9eb4a568db4p8@Lat
4.47e-30FFCP PHASE2:Mm9::chr4:125978325..125978339,-#_5b936b4cd8d41d26c1baa9eb4a568db4p@chr4:125978325..125978339, -
4.51e-30FFCP PHASE2:Mm9::chr6:41497343..41497377,+#_094255b2f66a3b7b7f8ee251bd6c58a6p@chr6:41497343..41497377, +
4.51e-30FFCP PHASE1:Mm9::chr6:41497343..41497377,+#_094255b2f66a3b7b7f8ee251bd6c58a6p@chr6:41497343..41497377, +
4.54e-30FFCP PHASE2:Mm9::chr14:54794540..54794554,+#_926377efd4c0c43d3ae4f2cbeb539755p@chr14:54794540..54794554, +
4.54e-30FFCP PHASE1:Mm9::chr14:54794540..54794554,+#_926377efd4c0c43d3ae4f2cbeb539755p@chr14:54794540..54794554, +
4.7e-30FFCP PHASE2:Mm9::chr6:41128837..41128859,+#_59102399d06d06428e4f8e1a7ce62bd6p2@Gm5409
4.7e-30FFCP PHASE1:Mm9::chr6:41128837..41128859,+#_59102399d06d06428e4f8e1a7ce62bd6p2@Gm5409










Property "Property value" (as page type) with input value "UBPROP:0000001 "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.