FFCP PHASE2:Hg19::chr1:216596783..216596796,-
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Short description: | p1@USH2A |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_USH2A_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -45bp_to_ENST00000307340, ENST00000366942, ENST00000366943, NM_007123, NM_206933, uc001hku.1, uc001hkv.2_5end |
EntrezGene: | USH2A |
HGNC: | 12601 |
UniProt: | O75445 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p1@USH2A |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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Merkel cell | 8.70e-23 | 2 |
lung fibroblast | 6.97e-12 | 1 |
keratinocyte | 1.10e-09 | 5 |
neuron associated cell | 2.60e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.60e-09 | 17 |
stratified squamous epithelial cell | 3.27e-08 | 6 |
keratin accumulating cell | 3.27e-08 | 6 |
stratified epithelial cell | 3.27e-08 | 6 |
keratinizing barrier epithelial cell | 3.27e-08 | 6 |
epithelial fate stem cell | 3.27e-08 | 6 |
Showing 1 to 10 of 12 entries
Ontology term | p-value | n |
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gland of diencephalon | 2.05e-42 | 4 |
neuroendocrine gland | 2.05e-42 | 4 |
diencephalon | 2.06e-24 | 7 |
future diencephalon | 2.06e-24 | 7 |
pineal body | 1.34e-22 | 2 |
regional part of epithalamus | 1.34e-22 | 2 |
secretory circumventricular organ | 1.34e-22 | 2 |
circumventricular organ | 1.34e-22 | 2 |
epithalamus | 1.34e-22 | 2 |
pituitary gland | 1.14e-21 | 2 |
Showing 1 to 10 of 21 entries
Ontology term | p-value | n |
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lung small cell carcinoma | 2.13e-11 | 4 |
bronchus cancer | 6.98e-07 | 7 |
bronchogenic carcinoma | 6.98e-07 | 7 |
lung cancer | 7.81e-07 | 15 |
Showing 1 to 4 of 4 entries