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Coexpression cluster:C150: Difference between revisions

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{{Coexpression_clusters
{{Coexpression_clusters
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128639412800133,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30527185027771,0.598814562168438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|full_id=C150_merkel_carcinoid_nonsmall_gastrointestinal_argyrophil_pineal_small
|full_id=C150_merkel_carcinoid_nonsmall_gastrointestinal_argyrophil_pineal_small
|gostat_on_coexpression_clusters=GO:0042491!auditory receptor cell differentiation!3.448801044842e-09!222662;474;5459;2672$GO:0042490!mechanoreceptor differentiation!3.448801044842e-09!222662;474;5459;2672$GO:0060113!inner ear receptor cell differentiation!3.448801044842e-09!222662;474;5459;2672$GO:0042472!inner ear morphogenesis!3.31530321747534e-08!222662;474;5459;2672$GO:0042471!ear morphogenesis!4.75021866280329e-08!222662;474;5459;2672$GO:0048839!inner ear development!9.26960517688193e-08!222662;474;5459;2672$GO:0043583!ear development!1.20355517019841e-07!222662;474;5459;2672$GO:0007423!sensory organ development!1.97531279678092e-06!222662;474;5459;2672$GO:0048598!embryonic morphogenesis!2.40976491361931e-06!222662;474;5459;2672$GO:0006357!regulation of transcription from RNA polymerase II promoter!2.44749855030467e-05!474;5459;55502;5457;2672$GO:0032990!cell part morphogenesis!3.8893567802266e-05!222662;474;5459;5457$GO:0048858!cell projection morphogenesis!3.8893567802266e-05!222662;474;5459;5457$GO:0030030!cell projection organization and biogenesis!3.8893567802266e-05!222662;474;5459;5457$GO:0007275!multicellular organismal development!4.0111506662543e-05!222662;474;5459;55502;1748;5457;2672;1298$GO:0048731!system development!4.80974703124171e-05!222662;474;5459;55502;5457;2672;1298$GO:0032502!developmental process!4.80974703124171e-05!474;55502;1748;5457;222662;5459;23345;1298;2672$GO:0009790!embryonic development!5.21588078337726e-05!222662;474;5459;2672$GO:0048869!cellular developmental process!8.44270344712617e-05!222662;474;23345;5459;55502;5457;2672$GO:0030154!cell differentiation!8.44270344712617e-05!222662;474;23345;5459;55502;5457;2672$GO:0048513!organ development!8.44270344712617e-05!222662;474;5459;5457;2672;1298$GO:0006366!transcription from RNA polymerase II promoter!8.8279020785022e-05!474;5459;55502;5457;2672$GO:0032501!multicellular organismal process!0.000106438416945446!474;55502;1748;5457;222662;51168;5459;1298;2672$GO:0048856!anatomical structure development!0.000140090819149837!222662;474;5459;55502;5457;2672;1298$GO:0009887!organ morphogenesis!0.000200968586353601!222662;474;5459;2672$GO:0007409!axonogenesis!0.000200968586353601!474;5459;5457$GO:0048667!neuron morphogenesis during differentiation!0.000210154693008892!474;5459;5457$GO:0048812!neurite morphogenesis!0.000210154693008892!474;5459;5457$GO:0001708!cell fate specification!0.000210154693008892!474;2672$GO:0000904!cellular morphogenesis during differentiation!0.000233770238907642!474;5459;5457$GO:0050954!sensory perception of mechanical stimulus!0.000250333507452838!51168;222662;5459$GO:0007605!sensory perception of sound!0.000250333507452838!51168;222662;5459$GO:0003700!transcription factor activity!0.000250333507452838!474;5459;55502;1748;23314;5457$GO:0031175!neurite development!0.00025199268930492!474;5459;5457$GO:0050885!neuromuscular process controlling balance!0.00025199268930492!5459;5457$GO:0006355!regulation of transcription, DNA-dependent!0.000270991047338285!474;5459;55502;1748;23314;5457;81033;2672$GO:0006351!transcription, DNA-dependent!0.000308548976568433!474;5459;55502;1748;23314;5457;81033;2672$GO:0032774!RNA biosynthetic process!0.000308548976568433!474;5459;55502;1748;23314;5457;81033;2672$GO:0048666!neuron development!0.000324737421023006!474;5459;5457$GO:0050905!neuromuscular process!0.000352076630921378!5459;5457$GO:0032989!cellular structure morphogenesis!0.000352076630921378!222662;474;5459;5457$GO:0000902!cell morphogenesis!0.000352076630921378!222662;474;5459;5457$GO:0045449!regulation of transcription!0.000418666594506109!474;5459;55502;1748;23314;5457;81033;2672$GO:0009653!anatomical structure morphogenesis!0.000448975509715475!222662;474;5459;5457;2672$GO:0019219!regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.000448975509715475!474;5459;55502;1748;23314;5457;81033;2672$GO:0006350!transcription!0.000522258809055618!474;5459;55502;1748;23314;5457;81033;2672$GO:0010468!regulation of gene expression!0.000540803525951619!474;5459;55502;1748;23314;5457;81033;2672$GO:0031323!regulation of cellular metabolic process!0.000637519357924391!474;5459;55502;1748;23314;5457;81033;2672$GO:0030182!neuron differentiation!0.00064564947869513!474;5459;5457$GO:0016477!cell migration!0.000859842311100581!474;5459;5457$GO:0019222!regulation of metabolic process!0.000871800303826359!474;5459;55502;1748;23314;5457;81033;2672$GO:0016070!RNA metabolic process!0.000871800303826359!474;5459;55502;1748;23314;5457;81033;2672$GO:0048699!generation of neurons!0.000906070976962741!474;5459;5457$GO:0022008!neurogenesis!0.00111274255393528!474;5459;5457$GO:0045597!positive regulation of cell differentiation!0.00111274255393528!474;2672$GO:0007399!nervous system development!0.00124687473016944!474;5459;55502;5457$GO:0007411!axon guidance!0.00152510102005092!474;5459$GO:0003677!DNA binding!0.00193362723345703!474;5459;55502;1748;23314;5457;2672$GO:0051094!positive regulation of developmental process!0.00193362723345703!474;2672$GO:0045633!positive regulation of mechanoreceptor differentiation!0.00193362723345703!474$GO:0045609!positive regulation of auditory receptor cell differentiation!0.00193362723345703!474$GO:0019230!proprioception!0.00193362723345703!5457$GO:0051355!proprioception during equilibrioception!0.00193362723345703!5457$GO:0048934!peripheral nervous system neuron differentiation!0.00193362723345703!5457$GO:0042660!positive regulation of cell fate specification!0.00193362723345703!2672$GO:0042667!auditory receptor cell fate specification!0.00193362723345703!474$GO:0042659!regulation of cell fate specification!0.00193362723345703!2672$GO:0010453!regulation of cell fate commitment!0.00193362723345703!2672$GO:0009996!negative regulation of cell fate specification!0.00193362723345703!2672$GO:0021535!cell migration in hindbrain!0.00193362723345703!5457$GO:0010454!negative regulation of cell fate commitment!0.00193362723345703!2672$GO:0045165!cell fate commitment!0.00193362723345703!474;2672$GO:0043565!sequence-specific DNA binding!0.00201455786858099!5459;1748;23314;5457$GO:0006928!cell motility!0.00244243515136125!474;5459;5457$GO:0051674!localization of cell!0.00244243515136125!474;5459;5457$GO:0007600!sensory perception!0.00267080380076567!51168;222662;5459;5457$GO:0060088!auditory receptor cell stereocilium organization and biogenesis!0.00332701889408755!222662$GO:0045606!positive regulation of epidermal cell differentiation!0.00332701889408755!474$GO:0045684!positive regulation of epidermis development!0.00332701889408755!474$GO:0000083!G1/S-specific transcription in mitotic cell cycle!0.00332701889408755!2672$GO:0002093!auditory receptor cell morphogenesis!0.00332701889408755!222662$GO:0060117!auditory receptor cell development!0.00332701889408755!222662$GO:0031290!retinal ganglion cell axon guidance!0.00332701889408755!5459$GO:0010467!gene expression!0.00361483690152535!474;5459;55502;1748;23314;5457;81033;2672$GO:0050794!regulation of cellular process!0.00444716309051365!474;5459;55502;1748;23314;5457;81033;2672$GO:0060122!inner ear receptor stereocilium organization and biogenesis!0.00444716309051365!222662$GO:0005594!collagen type IX!0.00444716309051365!1298$GO:0042668!auditory receptor cell fate determination!0.00444716309051365!474$GO:0001967!suckling behavior!0.00444716309051365!5457$GO:0045607!regulation of auditory receptor cell differentiation!0.00444716309051365!474$GO:0031490!chromatin DNA binding!0.00444716309051365!474$GO:0060119!inner ear receptor cell development!0.00444716309051365!222662$GO:0045631!regulation of mechanoreceptor differentiation!0.00444716309051365!474$GO:0006139!nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0051878503418388!474;5459;55502;1748;23314;5457;81033;2672$GO:0007420!brain development!0.00545406274925008!474;5457$GO:0048468!cell development!0.00545406274925008!222662;474;5459;5457$GO:0048676!axon extension involved in development!0.00545406274925008!5459$GO:0050884!neuromuscular process controlling posture!0.00545406274925008!5457$GO:0004938!alpha2-adrenergic receptor activity!0.00545406274925008!151$GO:0060120!inner ear receptor cell fate commitment!0.00545406274925008!474$GO:0009912!auditory receptor cell fate commitment!0.00545406274925008!474$GO:0045595!regulation of cell differentiation!0.00552803704992555!474;2672$GO:0050877!neurological system process!0.00575868598239465!51168;222662;5459;5457$GO:0005634!nucleus!0.00594071659596121!474;55502;1748;23314;5457;5459;23345;2672$GO:0050789!regulation of biological process!0.00643815187902022!474;5459;55502;1748;23314;5457;81033;2672$GO:0005521!lamin binding!0.00764273223252338!23345$GO:0007638!mechanosensory behavior!0.00764273223252338!2672$GO:0005593!FACIT collagen!0.00764273223252338!1298$GO:0045604!regulation of epidermal cell differentiation!0.00875111188274745!474$GO:0021953!central nervous system neuron differentiation!0.00875111188274745!5457$GO:0045682!regulation of epidermis development!0.0098190445325147!474$GO:0050957!equilibrioception!0.0098190445325147!5457$GO:0003008!system process!0.0105738530424472!51168;222662;5459;5457$GO:0030934!anchoring collagen!0.0106938622956472!1298$GO:0004936!alpha-adrenergic receptor activity!0.0106938622956472!151$GO:0065007!biological regulation!0.0106938622956472!474;5459;55502;1748;23314;5457;81033;2672$GO:0007417!central nervous system development!0.0125548743887259!474;5457$GO:0050793!regulation of developmental process!0.0125548743887259!474;2672$GO:0051705!behavioral interaction between organisms!0.0138434269449018!5457$GO:0006915!apoptosis!0.0149692882000764!474;5459;5457$GO:0012501!programmed cell death!0.0151842628104173!474;5459;5457$GO:0007030!Golgi organization and biogenesis!0.0157437484703259!23345$GO:0004935!adrenoceptor activity!0.0167265920036523!151$GO:0016265!death!0.0169687109973151!474;5459;5457$GO:0008219!cell death!0.0169687109973151!474;5459;5457$GO:0007610!behavior!0.0179851279240935!5457;2672$GO:0048675!axon extension!0.0182029746793254!5459$GO:0009612!response to mechanical stimulus!0.0182029746793254!2672$GO:0048522!positive regulation of cellular process!0.0188364740872973!474;5457;2672$GO:0044464!cell part!0.0201172655834711!474;55502;94235;1748;23314;5457;51168;222662;23345;5459;151;81033;1298;2672;144453$GO:0051179!localization!0.0215191334275471!474;5459;5457;81033;1298;144453$GO:0030902!hindbrain development!0.0238460910724352!5457$GO:0048518!positive regulation of biological process!0.0244914321799594!474;5457;2672$GO:0007422!peripheral nervous system development!0.0245036542724781!5457$GO:0016043!cellular component organization and biogenesis!0.0251413212706414!222662;474;23345;5459;5457$GO:0007416!synaptogenesis!0.0251413212706414!5457$GO:0045664!regulation of neuron differentiation!0.025771456854288!474$GO:0043283!biopolymer metabolic process!0.025771456854288!474;5459;55502;1748;23314;5457;81033;2672$GO:0001709!cell fate determination!0.0284373899751289!474$GO:0003676!nucleic acid binding!0.0284373899751289!474;5459;55502;1748;23314;5457;2672$GO:0051402!neuron apoptosis!0.0290621776284089!5459$GO:0000082!G1/S transition of mitotic cell cycle!0.0326766313474467!2672$GO:0003779!actin binding!0.0339140597736452!51168;23345$GO:0001764!neuron migration!0.034100852326719!474$GO:0005834!heterotrimeric G-protein complex!0.0345575661049139!94235$GO:0007631!feeding behavior!0.0345575661049139!5457$GO:0006997!nuclear organization and biogenesis!0.0352412111652633!23345$GO:0050808!synapse organization and biogenesis!0.0359151778143829!5457$GO:0042692!muscle cell differentiation!0.0420147355717764!23345$GO:0006811!ion transport!0.0424420126752048!81033;1298;144453$GO:0009913!epidermal cell differentiation!0.044130865967173!474$GO:0019897!extrinsic to plasma membrane!0.0447240781727989!94235$GO:0005581!collagen!0.0479447883679032!1298$GO:0048730!epidermis morphogenesis!0.0485035166176686!474
|gostat_on_coexpression_clusters=GO:0042491!auditory receptor cell differentiation!3.448801044842e-09!222662;474;5459;2672$GO:0042490!mechanoreceptor differentiation!3.448801044842e-09!222662;474;5459;2672$GO:0060113!inner ear receptor cell differentiation!3.448801044842e-09!222662;474;5459;2672$GO:0042472!inner ear morphogenesis!3.31530321747534e-08!222662;474;5459;2672$GO:0042471!ear morphogenesis!4.75021866280329e-08!222662;474;5459;2672$GO:0048839!inner ear development!9.26960517688193e-08!222662;474;5459;2672$GO:0043583!ear development!1.20355517019841e-07!222662;474;5459;2672$GO:0007423!sensory organ development!1.97531279678092e-06!222662;474;5459;2672$GO:0048598!embryonic morphogenesis!2.40976491361931e-06!222662;474;5459;2672$GO:0006357!regulation of transcription from RNA polymerase II promoter!2.44749855030467e-05!474;5459;55502;5457;2672$GO:0032990!cell part morphogenesis!3.8893567802266e-05!222662;474;5459;5457$GO:0048858!cell projection morphogenesis!3.8893567802266e-05!222662;474;5459;5457$GO:0030030!cell projection organization and biogenesis!3.8893567802266e-05!222662;474;5459;5457$GO:0007275!multicellular organismal development!4.0111506662543e-05!222662;474;5459;55502;1748;5457;2672;1298$GO:0048731!system development!4.80974703124171e-05!222662;474;5459;55502;5457;2672;1298$GO:0032502!developmental process!4.80974703124171e-05!474;55502;1748;5457;222662;5459;23345;1298;2672$GO:0009790!embryonic development!5.21588078337726e-05!222662;474;5459;2672$GO:0048869!cellular developmental process!8.44270344712617e-05!222662;474;23345;5459;55502;5457;2672$GO:0030154!cell differentiation!8.44270344712617e-05!222662;474;23345;5459;55502;5457;2672$GO:0048513!organ development!8.44270344712617e-05!222662;474;5459;5457;2672;1298$GO:0006366!transcription from RNA polymerase II promoter!8.8279020785022e-05!474;5459;55502;5457;2672$GO:0032501!multicellular organismal process!0.000106438416945446!474;55502;1748;5457;222662;51168;5459;1298;2672$GO:0048856!anatomical structure development!0.000140090819149837!222662;474;5459;55502;5457;2672;1298$GO:0009887!organ morphogenesis!0.000200968586353601!222662;474;5459;2672$GO:0007409!axonogenesis!0.000200968586353601!474;5459;5457$GO:0048667!neuron morphogenesis during differentiation!0.000210154693008892!474;5459;5457$GO:0048812!neurite morphogenesis!0.000210154693008892!474;5459;5457$GO:0001708!cell fate specification!0.000210154693008892!474;2672$GO:0000904!cellular morphogenesis during differentiation!0.000233770238907642!474;5459;5457$GO:0050954!sensory perception of mechanical stimulus!0.000250333507452838!51168;222662;5459$GO:0007605!sensory perception of sound!0.000250333507452838!51168;222662;5459$GO:0003700!transcription factor activity!0.000250333507452838!474;5459;55502;1748;23314;5457$GO:0031175!neurite development!0.00025199268930492!474;5459;5457$GO:0050885!neuromuscular process controlling balance!0.00025199268930492!5459;5457$GO:0006355!regulation of transcription, DNA-dependent!0.000270991047338285!474;5459;55502;1748;23314;5457;81033;2672$GO:0006351!transcription, DNA-dependent!0.000308548976568433!474;5459;55502;1748;23314;5457;81033;2672$GO:0032774!RNA biosynthetic process!0.000308548976568433!474;5459;55502;1748;23314;5457;81033;2672$GO:0048666!neuron development!0.000324737421023006!474;5459;5457$GO:0050905!neuromuscular process!0.000352076630921378!5459;5457$GO:0032989!cellular structure morphogenesis!0.000352076630921378!222662;474;5459;5457$GO:0000902!cell morphogenesis!0.000352076630921378!222662;474;5459;5457$GO:0045449!regulation of transcription!0.000418666594506109!474;5459;55502;1748;23314;5457;81033;2672$GO:0009653!anatomical structure morphogenesis!0.000448975509715475!222662;474;5459;5457;2672$GO:0019219!regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.000448975509715475!474;5459;55502;1748;23314;5457;81033;2672$GO:0006350!transcription!0.000522258809055618!474;5459;55502;1748;23314;5457;81033;2672$GO:0010468!regulation of gene expression!0.000540803525951619!474;5459;55502;1748;23314;5457;81033;2672$GO:0031323!regulation of cellular metabolic process!0.000637519357924391!474;5459;55502;1748;23314;5457;81033;2672$GO:0030182!neuron differentiation!0.00064564947869513!474;5459;5457$GO:0016477!cell migration!0.000859842311100581!474;5459;5457$GO:0019222!regulation of metabolic process!0.000871800303826359!474;5459;55502;1748;23314;5457;81033;2672$GO:0016070!RNA metabolic process!0.000871800303826359!474;5459;55502;1748;23314;5457;81033;2672$GO:0048699!generation of neurons!0.000906070976962741!474;5459;5457$GO:0022008!neurogenesis!0.00111274255393528!474;5459;5457$GO:0045597!positive regulation of cell differentiation!0.00111274255393528!474;2672$GO:0007399!nervous system development!0.00124687473016944!474;5459;55502;5457$GO:0007411!axon guidance!0.00152510102005092!474;5459$GO:0003677!DNA binding!0.00193362723345703!474;5459;55502;1748;23314;5457;2672$GO:0051094!positive regulation of developmental process!0.00193362723345703!474;2672$GO:0045633!positive regulation of mechanoreceptor differentiation!0.00193362723345703!474$GO:0045609!positive regulation of auditory receptor cell differentiation!0.00193362723345703!474$GO:0019230!proprioception!0.00193362723345703!5457$GO:0051355!proprioception during equilibrioception!0.00193362723345703!5457$GO:0048934!peripheral nervous system neuron differentiation!0.00193362723345703!5457$GO:0042660!positive regulation of cell fate specification!0.00193362723345703!2672$GO:0042667!auditory receptor cell fate specification!0.00193362723345703!474$GO:0042659!regulation of cell fate specification!0.00193362723345703!2672$GO:0010453!regulation of cell fate commitment!0.00193362723345703!2672$GO:0009996!negative regulation of cell fate specification!0.00193362723345703!2672$GO:0021535!cell migration in hindbrain!0.00193362723345703!5457$GO:0010454!negative regulation of cell fate commitment!0.00193362723345703!2672$GO:0045165!cell fate commitment!0.00193362723345703!474;2672$GO:0043565!sequence-specific DNA binding!0.00201455786858099!5459;1748;23314;5457$GO:0006928!cell motility!0.00244243515136125!474;5459;5457$GO:0051674!localization of cell!0.00244243515136125!474;5459;5457$GO:0007600!sensory perception!0.00267080380076567!51168;222662;5459;5457$GO:0060088!auditory receptor cell stereocilium organization and biogenesis!0.00332701889408755!222662$GO:0045606!positive regulation of epidermal cell differentiation!0.00332701889408755!474$GO:0045684!positive regulation of epidermis development!0.00332701889408755!474$GO:0000083!G1/S-specific transcription in mitotic cell cycle!0.00332701889408755!2672$GO:0002093!auditory receptor cell morphogenesis!0.00332701889408755!222662$GO:0060117!auditory receptor cell development!0.00332701889408755!222662$GO:0031290!retinal ganglion cell axon guidance!0.00332701889408755!5459$GO:0010467!gene expression!0.00361483690152535!474;5459;55502;1748;23314;5457;81033;2672$GO:0050794!regulation of cellular process!0.00444716309051365!474;5459;55502;1748;23314;5457;81033;2672$GO:0060122!inner ear receptor stereocilium organization and biogenesis!0.00444716309051365!222662$GO:0005594!collagen type IX!0.00444716309051365!1298$GO:0042668!auditory receptor cell fate determination!0.00444716309051365!474$GO:0001967!suckling behavior!0.00444716309051365!5457$GO:0045607!regulation of auditory receptor cell differentiation!0.00444716309051365!474$GO:0031490!chromatin DNA binding!0.00444716309051365!474$GO:0060119!inner ear receptor cell development!0.00444716309051365!222662$GO:0045631!regulation of mechanoreceptor differentiation!0.00444716309051365!474$GO:0006139!nucleobase, nucleoside, nucleotide and nucleic acid metabolic process!0.0051878503418388!474;5459;55502;1748;23314;5457;81033;2672$GO:0007420!brain development!0.00545406274925008!474;5457$GO:0048468!cell development!0.00545406274925008!222662;474;5459;5457$GO:0048676!axon extension involved in development!0.00545406274925008!5459$GO:0050884!neuromuscular process controlling posture!0.00545406274925008!5457$GO:0004938!alpha2-adrenergic receptor activity!0.00545406274925008!151$GO:0060120!inner ear receptor cell fate commitment!0.00545406274925008!474$GO:0009912!auditory receptor cell fate commitment!0.00545406274925008!474$GO:0045595!regulation of cell differentiation!0.00552803704992555!474;2672$GO:0050877!neurological system process!0.00575868598239465!51168;222662;5459;5457$GO:0005634!nucleus!0.00594071659596121!474;55502;1748;23314;5457;5459;23345;2672$GO:0050789!regulation of biological process!0.00643815187902022!474;5459;55502;1748;23314;5457;81033;2672$GO:0005521!lamin binding!0.00764273223252338!23345$GO:0007638!mechanosensory behavior!0.00764273223252338!2672$GO:0005593!FACIT collagen!0.00764273223252338!1298$GO:0045604!regulation of epidermal cell differentiation!0.00875111188274745!474$GO:0021953!central nervous system neuron differentiation!0.00875111188274745!5457$GO:0045682!regulation of epidermis development!0.0098190445325147!474$GO:0050957!equilibrioception!0.0098190445325147!5457$GO:0003008!system process!0.0105738530424472!51168;222662;5459;5457$GO:0030934!anchoring collagen!0.0106938622956472!1298$GO:0004936!alpha-adrenergic receptor activity!0.0106938622956472!151$GO:0065007!biological regulation!0.0106938622956472!474;5459;55502;1748;23314;5457;81033;2672$GO:0007417!central nervous system development!0.0125548743887259!474;5457$GO:0050793!regulation of developmental process!0.0125548743887259!474;2672$GO:0051705!behavioral interaction between organisms!0.0138434269449018!5457$GO:0006915!apoptosis!0.0149692882000764!474;5459;5457$GO:0012501!programmed cell death!0.0151842628104173!474;5459;5457$GO:0007030!Golgi organization and biogenesis!0.0157437484703259!23345$GO:0004935!adrenoceptor activity!0.0167265920036523!151$GO:0016265!death!0.0169687109973151!474;5459;5457$GO:0008219!cell death!0.0169687109973151!474;5459;5457$GO:0007610!behavior!0.0179851279240935!5457;2672$GO:0048675!axon extension!0.0182029746793254!5459$GO:0009612!response to mechanical stimulus!0.0182029746793254!2672$GO:0048522!positive regulation of cellular process!0.0188364740872973!474;5457;2672$GO:0044464!cell part!0.0201172655834711!474;55502;94235;1748;23314;5457;51168;222662;23345;5459;151;81033;1298;2672;144453$GO:0051179!localization!0.0215191334275471!474;5459;5457;81033;1298;144453$GO:0030902!hindbrain development!0.0238460910724352!5457$GO:0048518!positive regulation of biological process!0.0244914321799594!474;5457;2672$GO:0007422!peripheral nervous system development!0.0245036542724781!5457$GO:0016043!cellular component organization and biogenesis!0.0251413212706414!222662;474;23345;5459;5457$GO:0007416!synaptogenesis!0.0251413212706414!5457$GO:0045664!regulation of neuron differentiation!0.025771456854288!474$GO:0043283!biopolymer metabolic process!0.025771456854288!474;5459;55502;1748;23314;5457;81033;2672$GO:0001709!cell fate determination!0.0284373899751289!474$GO:0003676!nucleic acid binding!0.0284373899751289!474;5459;55502;1748;23314;5457;2672$GO:0051402!neuron apoptosis!0.0290621776284089!5459$GO:0000082!G1/S transition of mitotic cell cycle!0.0326766313474467!2672$GO:0003779!actin binding!0.0339140597736452!51168;23345$GO:0001764!neuron migration!0.034100852326719!474$GO:0005834!heterotrimeric G-protein complex!0.0345575661049139!94235$GO:0007631!feeding behavior!0.0345575661049139!5457$GO:0006997!nuclear organization and biogenesis!0.0352412111652633!23345$GO:0050808!synapse organization and biogenesis!0.0359151778143829!5457$GO:0042692!muscle cell differentiation!0.0420147355717764!23345$GO:0006811!ion transport!0.0424420126752048!81033;1298;144453$GO:0009913!epidermal cell differentiation!0.044130865967173!474$GO:0019897!extrinsic to plasma membrane!0.0447240781727989!94235$GO:0005581!collagen!0.0479447883679032!1298$GO:0048730!epidermis morphogenesis!0.0485035166176686!474

Revision as of 14:05, 12 September 2012


Full id: C150_merkel_carcinoid_nonsmall_gastrointestinal_argyrophil_pineal_small



Phase1 CAGE Peaks

Hg19::chr11:31312303..31312307,-p@chr11:31312303..31312307
-
Hg19::chr11:31312513..31312524,-p@chr11:31312513..31312524
-
Hg19::chr12:54779280..54779298,-p10@ZNF385A
Hg19::chr12:54786411..54786421,-p@chr12:54786411..54786421
-
Hg19::chr12:65175253..65175283,-p@chr12:65175253..65175283
-
Hg19::chr12:660023..660044,+p@chr12:660023..660044
+
Hg19::chr12:70093235..70093242,-p6@BEST3
Hg19::chr13:79169067..79169071,-p@chr13:79169067..79169071
-
Hg19::chr13:79177629..79177636,-p4@POU4F1
Hg19::chr13:79177674..79177701,-p1@POU4F1
Hg19::chr14:106331164..106331201,-p2@IGHJ2P
Hg19::chr15:46610951..46610964,+p@chr15:46610951..46610964
+
Hg19::chr15:68114974..68114985,+p@chr15:68114974..68114985
+
Hg19::chr15:68117844..68117858,+p3@SKOR1
Hg19::chr15:68124190..68124195,-p@chr15:68124190..68124195
-
Hg19::chr16:3005195..3005202,-p@chr16:3005195..3005202
-
Hg19::chr16:53653257..53653264,-p@chr16:53653257..53653264
-
Hg19::chr16:67429759..67429769,-p@chr16:67429759..67429769
-
Hg19::chr16:70207349..70207353,-p1@ENST00000502126
p1@uc002eyi.1
Hg19::chr16:70207686..70207690,+p1@CLEC18C
Hg19::chr17:18012062..18012075,+p1@MYO15A
Hg19::chr17:48049323..48049330,+p6@DLX4
Hg19::chr17:61554829..61554849,+p@chr17:61554829..61554849
+
Hg19::chr17:61573742..61573786,+p@chr17:61573742..61573786
+
Hg19::chr17:61600483..61600515,+p2@KCNH6
Hg19::chr17:61600682..61600740,+p1@KCNH6
Hg19::chr17:61603769..61603773,+p@chr17:61603769..61603773
+
Hg19::chr18:5197501..5197504,-p3@C18orf42
Hg19::chr18:77543021..77543032,-p@chr18:77543021..77543032
-
Hg19::chr18:77543062..77543072,-p@chr18:77543062..77543072
-
Hg19::chr19:39401676..39401683,-p@chr19:39401676..39401683
-
Hg19::chr19:39402817..39402833,-p1@LOC643669
Hg19::chr19:47138167..47138185,-p1@GNG8
Hg19::chr19:47139424..47139443,-p@chr19:47139424..47139443
-
Hg19::chr19:49928618..49928665,+p@chr19:49928618..49928665
+
Hg19::chr19:49928666..49928692,+p@chr19:49928666..49928692
+
Hg19::chr19:57599766..57599777,+p@chr19:57599766..57599777
+
Hg19::chr1:155048200..155048207,+p@chr1:155048200..155048207
+
Hg19::chr1:160342039..160342041,+p@chr1:160342039..160342041
+
Hg19::chr1:17026663..17026700,-p@chr1:17026663..17026700
-
Hg19::chr1:216196797..216196801,-p@chr1:216196797..216196801
-
Hg19::chr1:216595350..216595395,-p@chr1:216595350..216595395
-
Hg19::chr1:242843433..242843446,-p@chr1:242843433..242843446
-
Hg19::chr1:40769918..40769923,-p@chr1:40769918..40769923
-
Hg19::chr1:40770344..40770353,-p29@COL9A2
Hg19::chr1:92949195..92949210,-p7@GFI1
Hg19::chr1:92949213..92949223,-p9@GFI1
Hg19::chr20:31116333..31116338,-p@chr20:31116333..31116338
-
Hg19::chr20:49727833..49727839,-p@chr20:49727833..49727839
-
Hg19::chr20:49727891..49727898,-p@chr20:49727891..49727898
-
Hg19::chr20:49727900..49727904,-p@chr20:49727900..49727904
-
Hg19::chr20:7391944..7391948,+p@chr20:7391944..7391948
+
Hg19::chr2:194367490..194367523,+p@chr2:194367490..194367523
+
Hg19::chr2:197078770..197078778,+p@chr2:197078770..197078778
+
Hg19::chr2:197080808..197080817,-p@chr2:197080808..197080817
-
Hg19::chr2:197081754..197081790,-p@chr2:197081754..197081790
-
Hg19::chr2:200325452..200325462,-p33@SATB2
Hg19::chr2:219846948..219846958,-p@chr2:219846948..219846958
-
Hg19::chr2:239149300..239149321,-p2@HES6
Hg19::chr2:96782288..96782301,-p2@ADRA2B
Hg19::chr2:96782304..96782315,-p1@ADRA2B
Hg19::chr3:181980650..181980653,-p@chr3:181980650..181980653
-
Hg19::chr3:182129789..182129798,-p@chr3:182129789..182129798
-
Hg19::chr3:182129807..182129809,-p@chr3:182129807..182129809
-
Hg19::chr3:182129895..182129901,-p@chr3:182129895..182129901
-
Hg19::chr3:182129918..182129932,-p@chr3:182129918..182129932
-
Hg19::chr3:182262882..182262922,-p@chr3:182262882..182262922
-
Hg19::chr3:192232532..192232549,-p@chr3:192232532..192232549
-
Hg19::chr3:85827683..85827691,+p@chr3:85827683..85827691
+
Hg19::chr3:85829954..85829989,-p@chr3:85829954..85829989
-
Hg19::chr4:132456095..132456124,-p@chr4:132456095..132456124
-
Hg19::chr4:173606828..173606840,-p@chr4:173606828..173606840
-
Hg19::chr4:17783004..17783015,-p3@FAM184B
Hg19::chr4:17783228..17783250,-p1@FAM184B
Hg19::chr4:6356121..6356152,-p@chr4:6356121..6356152
-
Hg19::chr4:77155662..77155702,-p@chr4:77155662..77155702
-
Hg19::chr4:94749897..94749909,+p1@ATOH1
Hg19::chr4:94750014..94750025,+p2@ATOH1
Hg19::chr4:94751839..94751843,+p@chr4:94751839..94751843
+
Hg19::chr4:94997408..94997423,-p@chr4:94997408..94997423
-
Hg19::chr5:145718398..145718410,+p1@POU4F3
Hg19::chr5:145718596..145718607,+p2@POU4F3
Hg19::chr5:145722450..145722456,+p@chr5:145722450..145722456
+
Hg19::chr5:145724630..145724641,+p@chr5:145724630..145724641
+
Hg19::chr5:145724642..145724652,+p@chr5:145724642..145724652
+
Hg19::chr5:145808948..145808956,+p@chr5:145808948..145808956
+
Hg19::chr5:168853885..168853910,-p@chr5:168853885..168853910
-
Hg19::chr5:50674304..50674338,-p@chr5:50674304..50674338
-
Hg19::chr5:63986233..63986261,+p2@FAM159B
Hg19::chr5:63986324..63986342,+p1@FAM159B
Hg19::chr5:64369050..64369067,+p@chr5:64369050..64369067
+
Hg19::chr5:64369069..64369083,+p@chr5:64369069..64369083
+
Hg19::chr5:64369097..64369105,+p@chr5:64369097..64369105
+
Hg19::chr6:112466463..112466468,+p@chr6:112466463..112466468
+
Hg19::chr6:129930311..129930322,-p@chr6:129930311..129930322
-
Hg19::chr6:129930348..129930359,-p@chr6:129930348..129930359
-
Hg19::chr6:133414003..133414011,-p@chr6:133414003..133414011
-
Hg19::chr6:152793691..152793718,-p8@SYNE1
Hg19::chr6:168502185..168502196,-p@chr6:168502185..168502196
-
Hg19::chr6:32862645..32862655,+p4@ENST00000499196
p4@uc003oci.1
Hg19::chr6:34507199..34507208,-p@chr6:34507199..34507208
-
Hg19::chr6:35773169..35773180,+p3@LHFPL5
Hg19::chr6:50807829..50807852,+p@chr6:50807829..50807852
+
Hg19::chr6:91865192..91865202,-p@chr6:91865192..91865202
-
Hg19::chr7:119914647..119914684,+p1@AB384090
Hg19::chr7:126173903..126173915,-p@chr7:126173903..126173915
-
Hg19::chr8:137528469..137528506,+p@chr8:137528469..137528506
+
Hg19::chr9:104302091..104302134,+p@chr9:104302091..104302134
+
Hg19::chr9:107573173..107573188,-p@chr9:107573173..107573188
-
Hg19::chr9:139089234..139089236,-p@chr9:139089234..139089236
-
Hg19::chr9:139096224..139096231,-p@chr9:139096224..139096231
-
Hg19::chr9:14346413..14346451,+p@chr9:14346413..14346451
+
Hg19::chr9:20236750..20236767,+p@chr9:20236750..20236767
+
Hg19::chrX:130021517..130021528,-p@chrX:130021517..130021528
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0042491auditory receptor cell differentiation3.448801044842e-09
GO:0042490mechanoreceptor differentiation3.448801044842e-09
GO:0060113inner ear receptor cell differentiation3.448801044842e-09
GO:0042472inner ear morphogenesis3.31530321747534e-08
GO:0042471ear morphogenesis4.75021866280329e-08
GO:0048839inner ear development9.26960517688193e-08
GO:0043583ear development1.20355517019841e-07
GO:0007423sensory organ development1.97531279678092e-06
GO:0048598embryonic morphogenesis2.40976491361931e-06
GO:0006357regulation of transcription from RNA polymerase II promoter2.44749855030467e-05
GO:0032990cell part morphogenesis3.8893567802266e-05
GO:0048858cell projection morphogenesis3.8893567802266e-05
GO:0030030cell projection organization and biogenesis3.8893567802266e-05
GO:0007275multicellular organismal development4.0111506662543e-05
GO:0048731system development4.80974703124171e-05
GO:0032502developmental process4.80974703124171e-05
GO:0009790embryonic development5.21588078337726e-05
GO:0048869cellular developmental process8.44270344712617e-05
GO:0030154cell differentiation8.44270344712617e-05
GO:0048513organ development8.44270344712617e-05
GO:0006366transcription from RNA polymerase II promoter8.8279020785022e-05
GO:0032501multicellular organismal process0.000106438416945446
GO:0048856anatomical structure development0.000140090819149837
GO:0009887organ morphogenesis0.000200968586353601
GO:0007409axonogenesis0.000200968586353601
GO:0048667neuron morphogenesis during differentiation0.000210154693008892
GO:0048812neurite morphogenesis0.000210154693008892
GO:0001708cell fate specification0.000210154693008892
GO:0000904cellular morphogenesis during differentiation0.000233770238907642
GO:0050954sensory perception of mechanical stimulus0.000250333507452838
GO:0007605sensory perception of sound0.000250333507452838
GO:0003700transcription factor activity0.000250333507452838
GO:0031175neurite development0.00025199268930492
GO:0050885neuromuscular process controlling balance0.00025199268930492
GO:0006355regulation of transcription, DNA-dependent0.000270991047338285
GO:0006351transcription, DNA-dependent0.000308548976568433
GO:0032774RNA biosynthetic process0.000308548976568433
GO:0048666neuron development0.000324737421023006
GO:0050905neuromuscular process0.000352076630921378
GO:0032989cellular structure morphogenesis0.000352076630921378
GO:0000902cell morphogenesis0.000352076630921378
GO:0045449regulation of transcription0.000418666594506109
GO:0009653anatomical structure morphogenesis0.000448975509715475
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.000448975509715475
GO:0006350transcription0.000522258809055618
GO:0010468regulation of gene expression0.000540803525951619
GO:0031323regulation of cellular metabolic process0.000637519357924391
GO:0030182neuron differentiation0.00064564947869513
GO:0016477cell migration0.000859842311100581
GO:0019222regulation of metabolic process0.000871800303826359
GO:0016070RNA metabolic process0.000871800303826359
GO:0048699generation of neurons0.000906070976962741
GO:0022008neurogenesis0.00111274255393528
GO:0045597positive regulation of cell differentiation0.00111274255393528
GO:0007399nervous system development0.00124687473016944
GO:0007411axon guidance0.00152510102005092
GO:0003677DNA binding0.00193362723345703
GO:0051094positive regulation of developmental process0.00193362723345703
GO:0045633positive regulation of mechanoreceptor differentiation0.00193362723345703
GO:0045609positive regulation of auditory receptor cell differentiation0.00193362723345703
GO:0019230proprioception0.00193362723345703
GO:0051355proprioception during equilibrioception0.00193362723345703
GO:0048934peripheral nervous system neuron differentiation0.00193362723345703
GO:0042660positive regulation of cell fate specification0.00193362723345703
GO:0042667auditory receptor cell fate specification0.00193362723345703
GO:0042659regulation of cell fate specification0.00193362723345703
GO:0010453regulation of cell fate commitment0.00193362723345703
GO:0009996negative regulation of cell fate specification0.00193362723345703
GO:0021535cell migration in hindbrain0.00193362723345703
GO:0010454negative regulation of cell fate commitment0.00193362723345703
GO:0045165cell fate commitment0.00193362723345703
GO:0043565sequence-specific DNA binding0.00201455786858099
GO:0006928cell motility0.00244243515136125
GO:0051674localization of cell0.00244243515136125
GO:0007600sensory perception0.00267080380076567
GO:0060088auditory receptor cell stereocilium organization and biogenesis0.00332701889408755
GO:0045606positive regulation of epidermal cell differentiation0.00332701889408755
GO:0045684positive regulation of epidermis development0.00332701889408755
GO:0000083G1/S-specific transcription in mitotic cell cycle0.00332701889408755
GO:0002093auditory receptor cell morphogenesis0.00332701889408755
GO:0060117auditory receptor cell development0.00332701889408755
GO:0031290retinal ganglion cell axon guidance0.00332701889408755
GO:0010467gene expression0.00361483690152535
GO:0050794regulation of cellular process0.00444716309051365
GO:0060122inner ear receptor stereocilium organization and biogenesis0.00444716309051365
GO:0005594collagen type IX0.00444716309051365
GO:0042668auditory receptor cell fate determination0.00444716309051365
GO:0001967suckling behavior0.00444716309051365
GO:0045607regulation of auditory receptor cell differentiation0.00444716309051365
GO:0031490chromatin DNA binding0.00444716309051365
GO:0060119inner ear receptor cell development0.00444716309051365
GO:0045631regulation of mechanoreceptor differentiation0.00444716309051365
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0051878503418388
GO:0007420brain development0.00545406274925008
GO:0048468cell development0.00545406274925008
GO:0048676axon extension involved in development0.00545406274925008
GO:0050884neuromuscular process controlling posture0.00545406274925008
GO:0004938alpha2-adrenergic receptor activity0.00545406274925008
GO:0060120inner ear receptor cell fate commitment0.00545406274925008
GO:0009912auditory receptor cell fate commitment0.00545406274925008
GO:0045595regulation of cell differentiation0.00552803704992555
GO:0050877neurological system process0.00575868598239465
GO:0005634nucleus0.00594071659596121
GO:0050789regulation of biological process0.00643815187902022
GO:0005521lamin binding0.00764273223252338
GO:0007638mechanosensory behavior0.00764273223252338
GO:0005593FACIT collagen0.00764273223252338
GO:0045604regulation of epidermal cell differentiation0.00875111188274745
GO:0021953central nervous system neuron differentiation0.00875111188274745
GO:0045682regulation of epidermis development0.0098190445325147
GO:0050957equilibrioception0.0098190445325147
GO:0003008system process0.0105738530424472
GO:0030934anchoring collagen0.0106938622956472
GO:0004936alpha-adrenergic receptor activity0.0106938622956472
GO:0065007biological regulation0.0106938622956472
GO:0007417central nervous system development0.0125548743887259
GO:0050793regulation of developmental process0.0125548743887259
GO:0051705behavioral interaction between organisms0.0138434269449018
GO:0006915apoptosis0.0149692882000764
GO:0012501programmed cell death0.0151842628104173
GO:0007030Golgi organization and biogenesis0.0157437484703259
GO:0004935adrenoceptor activity0.0167265920036523
GO:0016265death0.0169687109973151
GO:0008219cell death0.0169687109973151
GO:0007610behavior0.0179851279240935
GO:0048675axon extension0.0182029746793254
GO:0009612response to mechanical stimulus0.0182029746793254
GO:0048522positive regulation of cellular process0.0188364740872973
GO:0044464cell part0.0201172655834711
GO:0051179localization0.0215191334275471
GO:0030902hindbrain development0.0238460910724352
GO:0048518positive regulation of biological process0.0244914321799594
GO:0007422peripheral nervous system development0.0245036542724781
GO:0016043cellular component organization and biogenesis0.0251413212706414
GO:0007416synaptogenesis0.0251413212706414
GO:0045664regulation of neuron differentiation0.025771456854288
GO:0043283biopolymer metabolic process0.025771456854288
GO:0001709cell fate determination0.0284373899751289
GO:0003676nucleic acid binding0.0284373899751289
GO:0051402neuron apoptosis0.0290621776284089
GO:0000082G1/S transition of mitotic cell cycle0.0326766313474467
GO:0003779actin binding0.0339140597736452
GO:0001764neuron migration0.034100852326719
GO:0005834heterotrimeric G-protein complex0.0345575661049139
GO:0007631feeding behavior0.0345575661049139
GO:0006997nuclear organization and biogenesis0.0352412111652633
GO:0050808synapse organization and biogenesis0.0359151778143829
GO:0042692muscle cell differentiation0.0420147355717764
GO:0006811ion transport0.0424420126752048
GO:0009913epidermal cell differentiation0.044130865967173
GO:0019897extrinsic to plasma membrane0.0447240781727989
GO:0005581collagen0.0479447883679032
GO:0048730epidermis morphogenesis0.0485035166176686



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br>disease_data<br>


Uber Anatomy
Ontology termp-valuen
adult organism2.20e-27115
regional part of nervous system1.62e-2694
nervous system1.62e-2694
central nervous system2.80e-2682
neural tube1.06e-2257
neural rod1.06e-2257
future spinal cord1.06e-2257
neural keel1.06e-2257
brain7.37e-2169
future brain7.37e-2169
regional part of brain1.11e-2059
anterior neural tube2.52e-1842
regional part of forebrain5.88e-1841
forebrain5.88e-1841
future forebrain5.88e-1841
neurectoderm4.11e-1490
telencephalon4.35e-1434
gray matter4.58e-1434
brain grey matter4.58e-1434
neural plate1.08e-1386
presumptive neural plate1.08e-1386
regional part of telencephalon1.29e-1333
cerebral hemisphere2.33e-1332
ectoderm2.99e-13173
presumptive ectoderm2.99e-13173
ectoderm-derived structure8.70e-13169
regional part of cerebral cortex2.10e-1122
neocortex1.88e-1020
cerebral cortex2.53e-1025
pallium2.53e-1025
pre-chordal neural plate5.93e-1061
anterior region of body1.89e-08129
craniocervical region1.89e-08129
head4.23e-08123
Disease
Ontology termp-valuen
cell type cancer2.60e-10143
cancer2.70e-09235
disease of cellular proliferation7.22e-09239
carcinoma3.31e-08106


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
SUZ12#23512125.275345359059253.30230218822868e-060.000110399852188353



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data