Coexpression cluster:C92: Difference between revisions

Latest revision as of 10:29, 17 September 2013

Full id: C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole

Phase1 CAGE Peaks

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Id	Short description
Hg19::chr10:101379080..101379085,+	p@chr10:101379080..101379085 +
Hg19::chr10:104556220..104556247,-	p@chr10:104556220..104556247 -
Hg19::chr10:104556407..104556425,+	p@chr10:104556407..104556425 +
Hg19::chr10:114594528..114594539,-	p@chr10:114594528..114594539 -
Hg19::chr10:114885446..114885465,+	p@chr10:114885446..114885465 +
Hg19::chr10:115070193..115070207,-	p@chr10:115070193..115070207 -
Hg19::chr10:115080077..115080087,-	p@chr10:115080077..115080087 -
Hg19::chr10:43609342..43609351,+	p@chr10:43609342..43609351 +
Hg19::chr10:73473819..73473836,+	p@chr10:73473819..73473836 +
Hg19::chr10:73534273..73534295,-	p@chr10:73534273..73534295 -

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Enriched pathways on this co-expression clusterSummary: Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons. Analyst: Emmanuel Dimont link to source dataset data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. Analyst: Erik Arner link to source dataset data

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GO ID	GO name	FDR corrected p-value
GO:0000267	cell fraction	4.28e-2
GO:0002029	desensitization of G-protein coupled receptor protein signaling pathway	3.31e-2
GO:0002376	immune system process	2.36e-2
GO:0004046	aminoacylase activity	3.89e-2
GO:0004871	signal transducer activity	4.97e-5
GO:0004872	receptor activity	4.93e-3
GO:0005085	guanyl-nucleotide exchange factor activity	4.98e-2
GO:0005515	protein binding	2.76e-2
GO:0005737	cytoplasm	1.89e-2
GO:0005886	plasma membrane	6.88e-3

Showing 1 to 10 of 77 entries

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Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji links to source dataset cell_data uberon_data

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Ontology term	p-value	n
monopoietic cell	1.08e-87	59
monocyte	1.08e-87	59
monoblast	1.08e-87	59
promonocyte	1.08e-87	59
intermediate monocyte	1.09e-28	9
CD14-positive, CD16-positive monocyte	1.09e-28	9
multi fate stem cell	1.10e-07	427
myeloid leukocyte	1.16e-81	72
motile cell	1.18e-09	386
nongranular leukocyte	1.49e-53	115
macrophage dendritic cell progenitor	1.70e-84	61
hematopoietic stem cell	1.99e-38	168
angioblastic mesenchymal cell	1.99e-38	168
somatic stem cell	2.04e-07	433
defensive cell	2.21e-107	48
phagocyte	2.21e-107	48
leukocyte	2.32e-50	136
myeloid lineage restricted progenitor cell	2.40e-77	66
classical monocyte	2.57e-124	42
CD14-positive, CD16-negative classical monocyte	2.57e-124	42
connective tissue cell	2.79e-11	361
stuff accumulating cell	3.03e-54	87
non-classical monocyte	3.13e-11	3
CD14-low, CD16-positive monocyte	3.13e-11	3
hematopoietic oligopotent progenitor cell	4.03e-35	161
hematopoietic multipotent progenitor cell	4.03e-35	161
stem cell	4.53e-07	441
granulocyte monocyte progenitor cell	4.84e-76	67
single nucleate cell	6.60e-10	3
mononuclear cell	6.60e-10	3
hematopoietic lineage restricted progenitor cell	7.30e-44	120
hematopoietic cell	7.61e-36	177
myeloid cell	8.80e-51	108
common myeloid progenitor	8.80e-51	108
mesenchymal cell	9.60e-12	354
basophil	9.76e-11	3

Showing 1 to 36 of 36 entries

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Ontology term	p-value	n
connective tissue	1.19e-10	371
hemolymphoid system	1.20e-80	108
immune system	1.27e-62	93
skeletal system	1.67e-47	100
lateral plate mesoderm	2.05e-35	203
bone element	2.97e-60	82
mesoderm	3.63e-19	315
mesoderm-derived structure	3.63e-19	315
presumptive mesoderm	3.63e-19	315
musculoskeletal system	4.11e-24	167
blood	5.57e-18	15
haemolymphatic fluid	5.57e-18	15
organism substance	5.57e-18	15
skeletal element	5.79e-54	90
hematopoietic system	7.66e-87	98
blood island	7.66e-87	98
bone marrow	7.87e-66	76

Showing 1 to 17 of 17 entries

Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon link to source data Novel motifs data Jaspar motifs data

Novel motifs

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Motifs	-log10(p-value)
motif22_GGMCTG	3.30
motif2_GCTGGAGG	3.20
motif19_GYTGGMC	1.99
motif169_GCCTGGCC	1.95
motif8_CCATGN	1.80
motif9_ANGGCT	1.75
motif53_ANGCTG	1.72
motif59_NCWCCARNR	1.60
motif43_CCCWGT	1.57
motif77_TCCTTGG	1.45

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JASPAR motifs

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Showing 1 to 10 of 125 entries

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ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. Analyst: Erik Arner link to source dataset data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. Analyst:NA link to data source data

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FF samples	Score
CD14-CD16+ Monocytes, donor1 CNhs13229	1.10
CD14-CD16+ Monocytes, donor2 CNhs13207	1.05
CD14-CD16+ Monocytes, donor3 CNhs13548	1.01
CD14+CD16+ Monocytes, donor2 CNhs13208	0.86
CD14+CD16+ Monocytes, donor1 CNhs13541	0.77
CD14+CD16+ Monocytes, donor3 CNhs13549	0.74
Basophils, donor1 CNhs12546	0.41
CD14+ monocytes - mock treated, donor3 CNhs13491	0.39
CD14+ monocytes - treated with Candida, donor3 CNhs13494	0.37
CD14+ monocytes - treated with Group A streptococci, donor3 CNhs13492	0.36

Showing 1 to 10 of 889 entries

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transducer activity!4.97454272835934e-05!2214;11214;3683;1524;55890;58475;165530;151306;943;4987;156;2215;11024;30817;10859;10044;8099;10287$GO:0060089!molecular transducer activity!4.97454272835934e-05!2214;11214;3683;1524;55890;58475;165530;151306;943;4987;156;2215;11024;30817;10859;10044;8099;10287$GO:0044425!membrane part!0.000885377741452317!2214;3683;1524;55890;9056;51092;58475;128346;441168;165530;151306;943;4987;91703;126364;7402;11024;1445;30817;11322;10859;7940;10287$GO:0008285!negative regulation of cell proliferation!0.0010982489843916!199;1445;943;6441;7940$GO:0019864!IgG binding!0.00389780543213328!2215;2214$GO:0050672!negative regulation of lymphocyte proliferation!0.00492500838025483!6441;7940$GO:0032945!negative regulation of mononuclear cell proliferation!0.00492500838025483!6441;7940$GO:0048523!negative regulation of cellular process!0.00492500838025483!199;10287;1445;943;6441;7940;8099;156$GO:0004872!receptor activity!0.00492500838025483!2215;2214;11024;3683;1524;55890;30817;10859;58475;165530;151306;943;4987$GO:0044464!cell part!0.00492500838025483!170463;29125;29965;1524;55890;9056;51092;58475;165530;151306;137797;1794;943;156;91703;7402;11322;8099;83874;51225;2214;11214;3683;51760;128346;441168;4987;6441;2215;126364;11024;30817;1445;10859;10044;7940;199;83541;10287;1396;6872$GO:0048519!negative regulation of biological process!0.00520183320258003!199;10287;1445;943;6441;7940;8099;156$GO:0019865!immunoglobulin binding!0.00688185411257371!2215;2214$GO:0016021!integral to membrane!0.00688185411257371!2214;3683;1524;55890;9056;51092;58475;128346;441168;165530;151306;943;4987;126364;11024;30817;11322;10859;7940$GO:0031224!intrinsic to membrane!0.00688185411257371!2214;3683;1524;55890;9056;51092;58475;128346;441168;165530;151306;943;4987;126364;11024;30817;11322;10859;7940$GO:0005886!plasma membrane!0.00688185411257371!2215;91703;2214;7402;3683;1524;55890;30817;1445;9056;151306;10287;137797;4987$GO:0051250!negative regulation of lymphocyte activation!0.00832577728169739!6441;7940$GO:0032403!protein complex binding!0.00879372966006079!2215;2214;1794$GO:0042127!regulation of cell proliferation!0.00921920829385283!199;1445;943;6441;7940$GO:0008283!cell proliferation!0.00968728738051494!199;1445;943;1396;6441;7940$GO:0030595!leukocyte chemotaxis!0.00993913319223597!1794;6441$GO:0050900!leukocyte migration!0.0173228094301686!1794;6441$GO:0042330!taxis!0.0181469423724365!1524;1794;6441$GO:0006935!chemotaxis!0.0181469423724365!1524;1794;6441$GO:0007166!cell surface receptor linked signal transduction!0.0181469423724365!29965;11024;3683;1524;55890;30817;151306;10287;4987;156$GO:0006952!defense response!0.0181469423724365!199;11024;3683;1524;6441$GO:0007165!signal transduction!0.018334818823925!29965;11214;11024;3683;1524;55890;30817;10044;58475;151306;10287;943;83874;4987;156$GO:0045554!regulation of TRAIL biosynthetic process!0.0188999696750325!943$GO:0043129!surfactant homeostasis!0.0188999696750325!6441$GO:0045553!TRAIL biosynthetic process!0.0188999696750325!943$GO:0048875!chemical homeostasis within a tissue!0.0188999696750325!6441$GO:0032639!TRAIL production!0.0188999696750325!943$GO:0045556!positive regulation of TRAIL biosynthetic process!0.0188999696750325!943$GO:0009605!response to external stimulus!0.0188999696750325!199;3683;1524;1794;6441$GO:0005737!cytoplasm!0.0188999696750325!29125;11214;55890;51760;1794;943;6441;156;91703;7402;1445;10044;11322;8099;7940;83541;10287;1396;51225$GO:0032944!regulation of mononuclear cell proliferation!0.0188999696750325!6441;7940$GO:0050670!regulation of lymphocyte proliferation!0.0188999696750325!6441;7940$GO:0006928!cell motility!0.0198542754536055!3683;1794;6441;51225$GO:0051674!localization of cell!0.0198542754536055!3683;1794;6441;51225$GO:0007626!locomotory behavior!0.0214749844586034!1524;1794;6441$GO:0002376!immune system process!0.0236206013010033!2215;2214;11024;1794;10859;6441;7940$GO:0030695!GTPase regulator activity!0.0249523236786799!11214;10287;1794;83874;10044$GO:0032943!mononuclear cell proliferation!0.0252075945113539!6441;7940$GO:0046651!lymphocyte proliferation!0.0252075945113539!6441;7940$GO:0044459!plasma membrane part!0.0260685840256939!91703;7402;3683;1524;55890;1445;9056;10287;4987$GO:0005515!protein binding!0.0276131105418551!2214;11214;3683;1524;55890;1794;943;156;91703;2215;126364;7402;1445;10859;10044;8099;7940;10287;83874;6872;51225$GO:0019807!aspartoacylase activity!0.0276131105418551!91703$GO:0047696!beta-adrenergic receptor kinase activity!0.0276131105418551!156$GO:0042035!regulation of cytokine biosynthetic process!0.0289078836085141!943;6441$GO:0007154!cell communication!0.0299010405478368!29965;11214;11024;3683;1524;55890;30817;10044;58475;151306;10287;943;83874;4987;156$GO:0016477!cell migration!0.0331147653005901!1794;6441;51225$GO:0042089!cytokine biosynthetic process!0.0331147653005901!943;6441$GO:0042107!cytokine metabolic process!0.0331147653005901!943;6441$GO:0033209!tumor necrosis factor-mediated signaling pathway!0.0331147653005901!29965$GO:0048286!alveolus development!0.0331147653005901!6441$GO:0022401!adaptation of signaling pathway!0.0331147653005901!156$GO:0008157!protein phosphatase 1 binding!0.0331147653005901!10859$GO:0002029!desensitization of G-protein coupled receptor protein signaling pathway!0.0331147653005901!156$GO:0045085!negative regulation of interleukin-2 biosynthetic process!0.0331147653005901!6441$GO:0042608!T cell receptor binding!0.0331147653005901!1794$GO:0006955!immune response!0.0344981384493859!2215;2214;11024;10859;6441;7940$GO:0051249!regulation of lymphocyte activation!0.0363072331852681!6441;7940$GO:0050865!regulation of cell activation!0.0389339002729788!6441;7940$GO:0045744!negative regulation of G-protein coupled receptor protein signaling pathway!0.0389339002729788!156$GO:0048246!macrophage chemotaxis!0.0389339002729788!6441$GO:0048247!lymphocyte chemotaxis!0.0389339002729788!1794$GO:0015051!X-opioid receptor activity!0.0389339002729788!4987$GO:0004046!aminoacylase activity!0.0389339002729788!91703$GO:0007186!G-protein coupled receptor protein signaling pathway!0.039985979963799!151306;10287;1524;55890;30817;4987;156$GO:0051329!interphase of mitotic cell cycle!0.039985979963799!6872;8099$GO:0051239!regulation of multicellular organismal process!0.0400152244196185!6441;7940;156$GO:0000267!cell fraction!0.0427906431484107!91703;11214;7402;10287;156$GO:0051325!interphase!0.0428389829493994!6872;8099$GO:0050828!regulation of liquid surface tension!0.0440488207431105!6441$GO:0042535!positive regulation of tumor necrosis factor biosynthetic process!0.0440488207431105!943$GO:0007610!behavior!0.0440488207431105!1524;1794;6441$GO:0005085!guanyl-nucleotide exchange factor 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645,0.993841,0.877183,0.630074,0.992674,0.98304,0.125198,0.289838,0.611489,0.508735,0.99638,0.977708,0.940136,0.996459,0.195506,0.623897,0.99795,0.99879,0.937586,0.878598,0.928821,0.983948,0.961394,0.999769,0.982773,0.985255,0.96075,0.783738,0.454657,0.581463,0.984241,0.834725,0.994974,0.981884,0.939835,0.819282,0.792005,0.991243,0.988434,0.806088,0.958725,0.98918,0.950222,0.617775,0.996518,0.998957,0.984012,0.999422,0.974735,0.940101,0.979028,0.983956,0.875084,0.716216,0.885773,0.770886,0.794799,0.939155,0.885528,0.974754,0.99841,0.87229,0.937951,0.983908,0.970924,0.67407,0.999045,0.988482,0.99846,0.820031,0.978781,0.677696,0.96961,0.900243,0.999584,0.361185,0.990591,0.604461,0.46151,0.965927,0.999365,0.999453,0.506738,0.943041,0.99782,0.983861,0.988637,0.883172,0.958949,0.999534,0.758042,0.342411,0.900349,0.751729,0.47992,0.830907,0.998101,0.961789,0.965593,0.993605,0.966087,0.915717,0.682798,0.917486,0.988668,0.977429,0.999926,0.784885,0.98775,0.914687,0.992976,0.994889,0.989799,0.981922,0.976801,0.995078,0.991209,0.983371,0.971295,0.998653,0.974676,0.900575,0.730299,0.999057,0.926712,0.997867,0.946792,0.999218,0.981959,0.753606,0.97164,0.744364|tfbs_overrepresentation_for_novel_motifs=0.19575,3.2023,0.174727,0.36626,0.319357,0.0559203,0.677644,1.80477,1.75189,0.186499,0.263258,0.342947,0.442715,0.210397,0.235059,1.16779,0.0241768,0.816786,1.99187,0.776311,0.174889,3.29876,0.0906946,0.884658,0.437615,0.0859679,0.854474,0.146266,0.334221,0.380272,0.29295,0.0997194,0.858482,1.26439,0.315894,0.700751,0.000418084,0.25415,1.37111,0.049739,0.0861652,0.164743,1.57477,0.30585,0.806547,0.193164,0.357072,0.154878,0.878806,0.0879261,0.0167179,0.264828,1.71673,0.0631448,0.157764,0.468542,0.0956421,0.0212374,1.59622,0.088638,0.0481408,0.0166304,0.60175,0.0585389,0.421465,0.198847,0.235069,0.251937,0.199445,0.155535,0.13701,0.393228,0.000432943,0.156201,0.0979768,0.599093,1.45237,0.572361,0.0898466,1.2043,1.10645,0.624718,0.102367,0.371751,0.0286635,1.90925e-06,0.00756922,0.952534,0.0609895,0.320252,0.333308,0.101668,0.112768,0.378978,0.00182964,1.11629,1.43813,0.303443,0.132771,0.306556,0.2013,0.0376229,0.0107679,0.3119,0.181934,0.00582135,0.0671962,0.122916,0.066037,0.0208317,0.49502,0.142406,0.793208,0.075517,0.280778,0.37487,0.00874247,0.288979,0.0997102,0.491154,0.0380465,0.124579,1.01771,0.115534,0.130222,0.574828,0.0744984,0.663018,0.184199,0.235253,0.250666,0.549015,0.761832,0.823796,0.348091,1.18086,0.504061,0.970049,0.624142,0.693127,0.358674,0.0754013,0.855844,0.50723,0.315356,0.220923,0.28023,0.553974,0.725544,0.00200407,0.981586,1.90325e-09,0.251148,1.11161,0.512878,0.17212,0.323619,0.135794,0.0663968,0.0206866,0.0749639,0.70836,0.349036,0.235673,0.763352,0.101482,0.645255,0.49611,1.9546|tfbs_overrepresentation_jaspar=MA0003.1;0.107657,MA0004.1;0.524825,MA0006.1;0.0792944,MA0007.1;0.2248,MA0009.1;0.0785646,MA0014.1;0.00604283,MA0017.1;0.527005,MA0019.1;0.136127,MA0024.1;0.0349195,MA0025.1;0.0438943,MA0027.1;1.14523,MA0028.1;0.0714498,MA0029.1;0.244941,MA0030.1;0.228152,MA0031.1;0.444217,MA0038.1;0.512162,MA0040.1;0.253759,MA0041.1;0.024857,MA0042.1;0.100111,MA0043.1;0.0173155,MA0046.1;0.0729545,MA0048.1;0.236793,MA0050.1;0.101387,MA0051.1;0.231902,MA0052.1;0.12533,MA0055.1;1.18739,MA0056.1;0,MA0057.1;0.540272,MA0058.1;1.03121,MA0059.1;0.844689,MA0060.1;0.00153203,MA0061.1;0.0515203,MA0063.1;0,MA0066.1;3.07373,MA0067.1;0.352304,MA0068.1;0.303382,MA0069.1;0.362561,MA0070.1;0.0656211,MA0071.1;1.34689,MA0072.1;1.18607,MA0073.1;0.236739,MA0074.1;0.141301,MA0076.1;0.0321883,MA0077.1;0.0600262,MA0078.1;0.512474,MA0081.1;2.41667,MA0083.1;0.0183531,MA0084.1;0.207585,MA0087.1;0.0624003,MA0088.1;2.08506,MA0089.1;0,MA0090.1;0.258322,MA0091.1;0.697148,MA0092.1;0.368299,MA0093.1;0.653873,MA0095.1;0,MA0098.1;0,MA0100.1;0.0486853,MA0101.1;0.0580521,MA0103.1;0.268655,MA0105.1;0.428085,MA0106.1;0.907238,MA0107.1;0.0220736,MA0108.2;0.00325094,MA0109.1;0,MA0111.1;0.690246,MA0113.1;0.0815544,MA0114.1;1.00911,MA0115.1;0.268062,MA0116.1;4.1658,MA0117.1;0.0999228,MA0119.1;1.66474,MA0122.1;0.116434,MA0124.1;0.0633695,MA0125.1;0.154028,MA0130.1;0,MA0131.1;0.247819,MA0132.1;0,MA0133.1;0,MA0135.1;0.44952,MA0136.1;2.0668,MA0139.1;0.0322007,MA0140.1;0.36119,MA0141.1;0.53782,MA0142.1;0.555126,MA0143.1;0.15405,MA0144.1;0.0113096,MA0145.1;0.501795,MA0146.1;1.68845,MA0147.1;0.138517,MA0148.1;0.65268,MA0149.1;4.3059,MA0062.2;0.0423768,MA0035.2;0.0915031,MA0039.2;2.4389,MA0138.2;0.72117,MA0002.2;0.324963,MA0137.2;0.00795194,MA0104.2;0.0600514,MA0047.2;0.313123,MA0112.2;2.97413,MA0065.2;2.76392,MA0150.1;0.108782,MA0151.1;0,MA0152.1;0.00269712,MA0153.1;0.0353782,MA0154.1;4.1115,MA0155.1;2.98798,MA0156.1;0.837693,MA0157.1;0.0885999,MA0158.1;0,MA0159.1;1.02096,MA0160.1;0.294889,MA0161.1;0,MA0162.1;4.81311e-06,MA0163.1;1.1909,MA0164.1;0.431322,MA0080.2;7.20307,MA0018.2;0.132752,MA0099.2;0.00932172,MA0079.2;0.00271096,MA0102.2;0.230633,MA0258.1;1.63488,MA0259.1;0.165675,MA0442.1;0}}
-|full_id=C92_CD14CD16_CD14_Eosinophils_Basophils_Neutrophils_Macrophage_Whole
-|gostat_on_coexpression_clusters=GO:0016020!membrane!9.32023741352661e-06!2214;11214;3683;1524;55890;9056;51760;51092;58475;441168;128346;165530;151306;137797;1794;943;4987;156;91703;2215;126364;7402;11024;1445;30817;11322;10044;10859;7940;10287$GO:0004871!signal transducer activity!4.97454272835934e-05!2214;11214;3683;1524;55890;58475;165530;151306;943;4987;156;2215;11024;30817;10859;10044;8099;10287$GO:0060089!molecular transducer activity!4.97454272835934e-05!2214;11214;3683;1524;55890;58475;165530;151306;943;4987;156;2215;11024;30817;10859;10044;8099;10287$GO:0044425!membrane part!0.000885377741452317!2214;3683;1524;55890;9056;51092;58475;128346;441168;165530;151306;943;4987;91703;126364;7402;11024;1445;30817;11322;10859;7940;10287$GO:0008285!negative regulation of cell proliferation!0.0010982489843916!199;1445;943;6441;7940$GO:0019864!IgG binding!0.00389780543213328!2215;2214$GO:0050672!negative regulation of lymphocyte proliferation!0.00492500838025483!6441;7940$GO:0032945!negative regulation of mononuclear cell proliferation!0.00492500838025483!6441;7940$GO:0048523!negative regulation of cellular process!0.00492500838025483!199;10287;1445;943;6441;7940;8099;156$GO:0004872!receptor activity!0.00492500838025483!2215;2214;11024;3683;1524;55890;30817;10859;58475;165530;151306;943;4987$GO:0044464!cell part!0.00492500838025483!170463;29125;29965;1524;55890;9056;51092;58475;165530;151306;137797;1794;943;156;91703;7402;11322;8099;83874;51225;2214;11214;3683;51760;128346;441168;4987;6441;2215;126364;11024;30817;1445;10859;10044;7940;199;83541;10287;1396;6872$GO:0048519!negative regulation of biological process!0.00520183320258003!199;10287;1445;943;6441;7940;8099;156$GO:0019865!immunoglobulin binding!0.00688185411257371!2215;2214$GO:0016021!integral to membrane!0.00688185411257371!2214;3683;1524;55890;9056;51092;58475;128346;441168;165530;151306;943;4987;126364;11024;30817;11322;10859;7940$GO:0031224!intrinsic to membrane!0.00688185411257371!2214;3683;1524;55890;9056;51092;58475;128346;441168;165530;151306;943;4987;126364;11024;30817;11322;10859;7940$GO:0005886!plasma membrane!0.00688185411257371!2215;91703;2214;7402;3683;1524;55890;30817;1445;9056;151306;10287;137797;4987$GO:0051250!negative regulation of lymphocyte activation!0.00832577728169739!6441;7940$GO:0032403!protein complex binding!0.00879372966006079!2215;2214;1794$GO:0042127!regulation of cell proliferation!0.00921920829385283!199;1445;943;6441;7940$GO:0008283!cell proliferation!0.00968728738051494!199;1445;943;1396;6441;7940$GO:0030595!leukocyte chemotaxis!0.00993913319223597!1794;6441$GO:0050900!leukocyte migration!0.0173228094301686!1794;6441$GO:0042330!taxis!0.0181469423724365!1524;1794;6441$GO:0006935!chemotaxis!0.0181469423724365!1524;1794;6441$GO:0007166!cell surface receptor linked signal transduction!0.0181469423724365!29965;11024;3683;1524;55890;30817;151306;10287;4987;156$GO:0006952!defense response!0.0181469423724365!199;11024;3683;1524;6441$GO:0007165!signal transduction!0.018334818823925!29965;11214;11024;3683;1524;55890;30817;10044;58475;151306;10287;943;83874;4987;156$GO:0045554!regulation of TRAIL biosynthetic process!0.0188999696750325!943$GO:0043129!surfactant homeostasis!0.0188999696750325!6441$GO:0045553!TRAIL biosynthetic process!0.0188999696750325!943$GO:0048875!chemical homeostasis within a tissue!0.0188999696750325!6441$GO:0032639!TRAIL production!0.0188999696750325!943$GO:0045556!positive regulation of TRAIL biosynthetic process!0.0188999696750325!943$GO:0009605!response to external stimulus!0.0188999696750325!199;3683;1524;1794;6441$GO:0005737!cytoplasm!0.0188999696750325!29125;11214;55890;51760;1794;943;6441;156;91703;7402;1445;10044;11322;8099;7940;83541;10287;1396;51225$GO:0032944!regulation of mononuclear cell proliferation!0.0188999696750325!6441;7940$GO:0050670!regulation of lymphocyte proliferation!0.0188999696750325!6441;7940$GO:0006928!cell motility!0.0198542754536055!3683;1794;6441;51225$GO:0051674!localization of cell!0.0198542754536055!3683;1794;6441;51225$GO:0007626!locomotory behavior!0.0214749844586034!1524;1794;6441$GO:0002376!immune system process!0.0236206013010033!2215;2214;11024;1794;10859;6441;7940$GO:0030695!GTPase regulator activity!0.0249523236786799!11214;10287;1794;83874;10044$GO:0032943!mononuclear cell proliferation!0.0252075945113539!6441;7940$GO:0046651!lymphocyte proliferation!0.0252075945113539!6441;7940$GO:0044459!plasma membrane part!0.0260685840256939!91703;7402;3683;1524;55890;1445;9056;10287;4987$GO:0005515!protein binding!0.0276131105418551!2214;11214;3683;1524;55890;1794;943;156;91703;2215;126364;7402;1445;10859;10044;8099;7940;10287;83874;6872;51225$GO:0019807!aspartoacylase activity!0.0276131105418551!91703$GO:0047696!beta-adrenergic receptor kinase activity!0.0276131105418551!156$GO:0042035!regulation of cytokine biosynthetic process!0.0289078836085141!943;6441$GO:0007154!cell communication!0.0299010405478368!29965;11214;11024;3683;1524;55890;30817;10044;58475;151306;10287;943;83874;4987;156$GO:0016477!cell migration!0.0331147653005901!1794;6441;51225$GO:0042089!cytokine biosynthetic process!0.0331147653005901!943;6441$GO:0042107!cytokine metabolic process!0.0331147653005901!943;6441$GO:0033209!tumor necrosis factor-mediated signaling pathway!0.0331147653005901!29965$GO:0048286!alveolus development!0.0331147653005901!6441$GO:0022401!adaptation of signaling pathway!0.0331147653005901!156$GO:0008157!protein phosphatase 1 binding!0.0331147653005901!10859$GO:0002029!desensitization of G-protein coupled receptor protein signaling pathway!0.0331147653005901!156$GO:0045085!negative regulation of interleukin-2 biosynthetic process!0.0331147653005901!6441$GO:0042608!T cell receptor binding!0.0331147653005901!1794$GO:0006955!immune response!0.0344981384493859!2215;2214;11024;10859;6441;7940$GO:0051249!regulation of lymphocyte activation!0.0363072331852681!6441;7940$GO:0050865!regulation of cell activation!0.0389339002729788!6441;7940$GO:0045744!negative regulation of G-protein coupled receptor protein signaling pathway!0.0389339002729788!156$GO:0048246!macrophage chemotaxis!0.0389339002729788!6441$GO:0048247!lymphocyte chemotaxis!0.0389339002729788!1794$GO:0015051!X-opioid receptor activity!0.0389339002729788!4987$GO:0004046!aminoacylase activity!0.0389339002729788!91703$GO:0007186!G-protein coupled receptor protein signaling pathway!0.039985979963799!151306;10287;1524;55890;30817;4987;156$GO:0051329!interphase of mitotic cell cycle!0.039985979963799!6872;8099$GO:0051239!regulation of multicellular organismal process!0.0400152244196185!6441;7940;156$GO:0000267!cell fraction!0.0427906431484107!91703;11214;7402;10287;156$GO:0051325!interphase!0.0428389829493994!6872;8099$GO:0050828!regulation of liquid surface tension!0.0440488207431105!6441$GO:0042535!positive regulation of tumor necrosis factor biosynthetic process!0.0440488207431105!943$GO:0007610!behavior!0.0440488207431105!1524;1794;6441$GO:0005085!guanyl-nucleotide exchange factor activity!0.0498283844727028!11214;1794;10044
-|id=C92
-}}

Motifs	-log10(p-value)
MA0080.2	7.20
MA0149.1	4.31
MA0116.1	4.17
MA0154.1	4.11
MA0066.1	3.07
MA0155.1	2.99
MA0112.2	2.97
MA0065.2	2.76
MA0039.2	2.44
MA0081.1	2.42

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Coexpression cluster:C92: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 10:29, 17 September 2013

Phase1 CAGE Peaks

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	Mozilla Cavendish skin Report a bug – Skin version: 3.0.0