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MCL coexpression mm9:81

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:11329054..11329067,+p4@Timm8a1
Mm9::chr10:117690196..117690207,+p@chr10:117690196..117690207
+
Mm9::chr10:14242869..14242871,+p1@Gm10335
Mm9::chr10:19928241..19928252,+p3@Gm6251
Mm9::chr10:38918239..38918248,+p@chr10:38918239..38918248
+
Mm9::chr10:42028226..42028231,+p@chr10:42028226..42028231
+
Mm9::chr10:69572772..69572775,+p@chr10:69572772..69572775
+
Mm9::chr11:116244019..116244031,+p1@ENSMUST00000121547
Mm9::chr11:21853106..21853115,+p1@ENSMUST00000120694
Mm9::chr11:41404512..41404517,+p1@ENSMUST00000117114
Mm9::chr11:46375506..46375508,+p1@ENSMUST00000120821
Mm9::chr11:54214454..54214478,+p2@ENSMUST00000144172
Mm9::chr11:69387321..69387335,+p@chr11:69387321..69387335
+
Mm9::chr11:69730802..69730816,+p@chr11:69730802..69730816
+
Mm9::chr11:86444564..86444566,-p1@ENSMUST00000117851
Mm9::chr11:97643691..97643713,-p1@LOC100044627
p1@Rpl23
Mm9::chr11:99793334..99793343,+p1@ENSMUST00000117567
Mm9::chr12:109951983..109951990,+p@chr12:109951983..109951990
+
Mm9::chr12:12029803..12029807,+p1@Gm4294
Mm9::chr12:48913864..48913876,+p@chr12:48913864..48913876
+
Mm9::chr13:109460770..109460775,+p1@Gm9000
Mm9::chr13:113727762..113727768,+p@chr13:113727762..113727768
+
Mm9::chr13:28349459..28349469,+p1@ENSMUST00000171255
Mm9::chr13:3298110..3298121,+p@chr13:3298110..3298121
+
Mm9::chr13:38296797..38296831,+p1@Snrnp48
Mm9::chr13:97972911..97972912,-p@chr13:97972911..97972912
-
Mm9::chr13:99586677..99586693,+p@chr13:99586677..99586693
+
Mm9::chr14:106081041..106081048,+p3@Rpl41
Mm9::chr14:65569151..65569160,+p4@Ints9
Mm9::chr14:74851342..74851343,+p@chr14:74851342..74851343
+
Mm9::chr15:102156586..102156602,+p2@Pfdn5
Mm9::chr15:102156603..102156612,+p5@Pfdn5
Mm9::chr15:102465409..102465418,+p1@ENSMUST00000038613
p1@ENSMUST00000142604
Mm9::chr15:103070873..103070884,+p1@Gm5643
Mm9::chr15:23419622..23419624,+p@chr15:23419622..23419624
+
Mm9::chr15:27566232..27566236,+p@chr15:27566232..27566236
+
Mm9::chr15:42980323..42980326,-p@chr15:42980323..42980326
-
Mm9::chr15:5066634..5066678,+p1@Gm13826
p1@Rpl37
Mm9::chr15:62717924..62717930,+p@chr15:62717924..62717930
+
Mm9::chr15:84838496..84838497,+p@chr15:84838496..84838497
+
Mm9::chr15:8864095..8864115,+p@chr15:8864095..8864115
+
Mm9::chr16:23050297..23050300,+p@chr16:23050297..23050300
+
Mm9::chr16:47212449..47212472,+p@chr16:47212449..47212472
+
Mm9::chr16:55966492..55966517,+p2@Rpl24
p2@Zbtb11
Mm9::chr17:28465521..28465536,+p1@Rpl10a
Mm9::chr17:46167589..46167592,+p@chr17:46167589..46167592
+
Mm9::chr17:71278346..71278347,+p1@Gm16519
Mm9::chr17:78890889..78890892,+p1@ENSMUST00000079363
Mm9::chr17:8358782..8358787,+p@chr17:8358782..8358787
+
Mm9::chr18:12332062..12332076,+p@chr18:12332062..12332076
+
Mm9::chr18:20841502..20841507,-p1@Gm10269
Mm9::chr18:32994963..32994967,-p@chr18:32994963..32994967
-
Mm9::chr18:35696193..35696200,+p1@ENSMUST00000081864
Mm9::chr18:35931365..35931395,+p5@Ube2d2
Mm9::chr18:47575034..47575042,-p@chr18:47575034..47575042
-
Mm9::chr18:6332585..6332607,+p3@Gm6341
p3@Rpl27
Mm9::chr19:11195841..11195860,+p@chr19:11195841..11195860
+
Mm9::chr19:11195873..11195901,+p@chr19:11195873..11195901
+
Mm9::chr19:22515503..22515521,+p@chr19:22515503..22515521
+
Mm9::chr19:23693815..23693817,+p1@ENSMUST00000104916
Mm9::chr19:24950111..24950129,+p4@Cycs
p4@Gm10053
Mm9::chr19:28817068..28817078,-p1@Gm5623
Mm9::chr19:42234118..42234125,+p@chr19:42234118..42234125
+
Mm9::chr19:6057925..6057958,+p1@Fau
Mm9::chr19:9041665..9041698,+p2@Eef1g
Mm9::chr19:9290828..9290835,+p1@ENSMUST00000073056
Mm9::chr1:158296168..158296175,+p1@Gm2000
p2@Rpl35
Mm9::chr1:39424745..39424776,+p1@Gm10191
p1@Gm13004
p1@Gm7689
p1@Gm8759
p1@LOC100505081
p1@LOC638399
p1@Rpl31
Mm9::chr1:60760757..60760764,+p1@ENSMUST00000122226
Mm9::chr1:7058444..7058445,+p@chr1:7058444..7058445
+
Mm9::chr1:72134390..72134394,+p@chr1:72134390..72134394
+
Mm9::chr1:72506032..72506037,+p1@ENSMUST00000146593
Mm9::chr1:88423263..88423297,+p1@Gm15466
p1@Ptma
Mm9::chr1:97395158..97395184,+p1@ENSMUST00000117288
Mm9::chr2:121544241..121544245,+p1@ENSMUST00000118165
Mm9::chr2:126736110..126736112,+p@chr2:126736110..126736112
+
Mm9::chr2:143681350..143681356,+p1@ENSMUST00000120038
Mm9::chr2:153651786..153651801,+p1@ENSMUST00000167274
Mm9::chr2:155505556..155505559,+p@chr2:155505556..155505559
+
Mm9::chr2:23057456..23057462,+p1@ENSMUST00000117205
Mm9::chr2:26890177..26890188,+p1@ENSMUST00000119562
Mm9::chr2:34420490..34420497,+p1@ENSMUST00000119822
Mm9::chr2:35282065..35282069,+p@chr2:35282065..35282069
+
Mm9::chr2:40411202..40411213,+p1@ENSMUST00000118928
Mm9::chr2:60173499..60173502,+p@chr2:60173499..60173502
+
Mm9::chr2:70297002..70297013,+p1@ENSMUST00000140507
Mm9::chr3:116547461..116547465,+p@chr3:116547461..116547465
+
Mm9::chr3:127215729..127215735,+p@chr3:127215729..127215735
+
Mm9::chr3:28704420..28704443,+p1@Rpl22l1
Mm9::chr3:59235156..59235161,+p@chr3:59235156..59235161
+
Mm9::chr3:89075829..89075830,+p@chr3:89075829..89075830
+
Mm9::chr3:93081986..93081994,+p1@ENSMUST00000122125
Mm9::chr3:95426158..95426169,+p1@ENSMUST00000074353
Mm9::chr4:115324924..115324925,+p1@ENSMUST00000119777
Mm9::chr4:132782458..132782461,+p@chr4:132782458..132782461
+
Mm9::chr4:151699940..151699985,+p1@LOC100504863
p1@Rpl22
Mm9::chr4:3297134..3297135,+p@chr4:3297134..3297135
+
Mm9::chr4:33051742..33051793,+p1@ENSMUST00000077575
Mm9::chr4:83243182..83243191,+p@chr4:83243182..83243191
+
Mm9::chr5:104411950..104411954,+p@chr5:104411950..104411954
+
Mm9::chr5:108946150..108946160,+p1@ENSMUST00000089781
Mm9::chr5:113307063..113307067,+p@chr5:113307063..113307067
+
Mm9::chr5:116009514..116009528,+p1@Rplp0
Mm9::chr5:124972650..124972655,+p@chr5:124972650..124972655
+
Mm9::chr5:138042787..138042788,+p@chr5:138042787..138042788
+
Mm9::chr5:147889121..147889161,+p1@Polr1d
Mm9::chr5:23356408..23356425,+p1@2700038G22Rik
p1@Snord93
Mm9::chr5:3236381..3236387,+p1@ENSMUST00000078810
Mm9::chr5:34101982..34101985,+p1@ENSMUST00000080166
p1@ENSMUST00000131139
Mm9::chr5:41733335..41733337,+p@chr5:41733335..41733337
+
Mm9::chr5:72438366..72438378,+p1@ENSMUST00000118662
Mm9::chr6:122645989..122645994,+p1@ENSMUST00000079261
Mm9::chr6:126940558..126940603,+p@chr6:126940558..126940603
+
Mm9::chr6:136810374..136810377,+p@chr6:136810374..136810377
+
Mm9::chr6:82902731..82902737,+p@chr6:82902731..82902737
+
Mm9::chr6:85026173..85026178,+p1@ENSMUST00000119728
Mm9::chr6:85839303..85839305,+p@chr6:85839303..85839305
+
Mm9::chr6:99720519..99720522,+p@chr6:99720519..99720522
+
Mm9::chr7:115006474..115006481,+p1@ENSMUST00000084759
Mm9::chr7:137145719..137145723,+p@chr7:137145719..137145723
+
Mm9::chr7:16531406..16531418,-p3@Gltscr2
Mm9::chr7:17305274..17305289,-p@chr7:17305274..17305289
-
Mm9::chr7:20497151..20497154,+p1@ENSMUST00000162324
Mm9::chr7:25647447..25647456,+p3@ENSMUST00000052897
Mm9::chr7:29135759..29135781,+p1@LOC100505015
p1@Rps16
Mm9::chr7:3655627..3655653,+p1@Rps9
Mm9::chr7:46843895..46843915,+p2@Gm2058
Mm9::chr8:126377691..126377694,+p1@ENSMUST00000118982
Mm9::chr8:19784715..19784746,+p1@ENSMUST00000081370
p2@uc009lat.1
Mm9::chr8:5639514..5639535,+p2@ENSMUST00000051687
Mm9::chr8:89571588..89571613,+p2@Gm12270
p2@Gm15483
p2@Gm6834
p2@Rps13
Mm9::chr9:119705758..119705760,+p@chr9:119705758..119705760
+
Mm9::chr9:120036897..120036911,+p1@LOC100505031
p1@LOC636901
p1@Rpsa
Mm9::chr9:123840094..123840116,+p@chr9:123840094..123840116
+
Mm9::chr9:31885816..31885825,+p@chr9:31885816..31885825
+
Mm9::chr9:40295247..40295270,+p@chr9:40295247..40295270
+
Mm9::chr9:48258361..48258369,+p4@Gm5616
p4@LOC100045968
p4@LOC100505330
p4@Nhp2l1
Mm9::chr9:48258396..48258425,+p3@Gm5616
p3@LOC100045968
p3@LOC100505330
p3@Nhp2l1
Mm9::chr9:70700352..70700381,+p1@ENSMUST00000105101
Mm9::chr9:71908703..71908704,+p1@ENSMUST00000086799
Mm9::chr9:96805814..96805823,+p@chr9:96805814..96805823
+
Mm9::chrX:124795796..124795836,+p1@ENSMUST00000121299
Mm9::chrX:137331841..137331853,+p1@ENSMUST00000117257
Mm9::chrX:138495327..138495342,+p1@ENSMUST00000121026
Mm9::chrX:151939481..151939490,-p1@ENSMUST00000121482
Mm9::chrX:153956515..153956532,-p@chrX:153956515..153956532
-
Mm9::chrX:154587757..154587760,+p1@ENSMUST00000120024
Mm9::chrX:154686705..154686706,+p1@ENSMUST00000118644
Mm9::chrX:159004741..159004750,+p1@ENSMUST00000073637
Mm9::chrX:43809518..43809524,-p1@Gm4987
Mm9::chrX:48374047..48374057,+p@chrX:48374047..48374057
+
Mm9::chrX:50125940..50125951,-p1@ENSMUST00000119571
Mm9::chrX:7624314..7624331,+p1@ENSMUST00000119726
Mm9::chrX:99384649..99384677,-p1@Rps4x


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0003735structural constituent of ribosome1.68709826044685e-16
GO:0005840ribosome1.68709826044685e-16
GO:0006412translation7.53213649444514e-14
GO:0030529ribonucleoprotein complex5.60202646732735e-12
GO:0009059macromolecule biosynthetic process5.82599771196891e-12
GO:0044249cellular biosynthetic process1.22556080151665e-10
GO:0009058biosynthetic process3.61849484968386e-09
GO:0032991macromolecular complex5.29861511206671e-09
GO:0044267cellular protein metabolic process2.06866238834972e-07
GO:0044260cellular macromolecule metabolic process2.29040418915371e-07
GO:0019538protein metabolic process2.92839328884756e-07
GO:0043232intracellular non-membrane-bound organelle6.23995002846423e-07
GO:0043228non-membrane-bound organelle6.23995002846423e-07
GO:0044444cytoplasmic part1.1078293146103e-06
GO:0033279ribosomal subunit6.96199056526569e-06
GO:0010467gene expression2.28080486478423e-05
GO:0019843rRNA binding2.28080486478423e-05
GO:0044445cytosolic part3.10537298367029e-05
GO:0015935small ribosomal subunit4.65684013540712e-05
GO:0005737cytoplasm6.79317585104317e-05
GO:0005830cytosolic ribosome (sensu Eukaryota)0.000177379526168898
GO:0043170macromolecule metabolic process0.000622853057704488
GO:0005843cytosolic small ribosomal subunit (sensu Eukaryota)0.000935290174700948
GO:0005829cytosol0.00339831371243851
GO:0044424intracellular part0.00339831371243851
GO:0044238primary metabolic process0.00502003776117627
GO:0044237cellular metabolic process0.00510549783614348
GO:0005622intracellular0.00524475172124167
GO:0006414translational elongation0.00827087314633101
GO:0043284biopolymer biosynthetic process0.0158794550471434
GO:0043229intracellular organelle0.0241137530171598
GO:0043226organelle0.0241137530171598
GO:0043234protein complex0.0241137530171598
GO:0048875chemical homeostasis within a tissue0.0241137530171598
GO:0042719mitochondrial intermembrane space protein transporter complex0.0241137530171598
GO:0007007inner mitochondrial membrane organization and biogenesis0.0241137530171598
GO:0045039protein import into mitochondrial inner membrane0.0241137530171598
GO:0001938positive regulation of endothelial cell proliferation0.0241137530171598
GO:0043129surfactant homeostasis0.0241137530171598
GO:0043681protein import into mitochondrion0.0241137530171598
GO:0005853eukaryotic translation elongation factor 1 complex0.0293925209401559
GO:0001936regulation of endothelial cell proliferation0.0344142695780648
GO:0042254ribosome biogenesis and assembly0.0383060962032322
GO:0006626protein targeting to mitochondrion0.0383060962032322
GO:0001935endothelial cell proliferation0.0427844513644846
GO:0010464regulation of mesenchymal cell proliferation0.0432979155665769
GO:0005842cytosolic large ribosomal subunit (sensu Eukaryota)0.0432979155665769
GO:0002053positive regulation of mesenchymal cell proliferation0.0432979155665769
GO:0010463mesenchymal cell proliferation0.0432979155665769
GO:0016272prefoldin complex0.0432979155665769



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic cell9.63e-1832
hematopoietic oligopotent progenitor cell9.63e-1832
hematopoietic stem cell9.63e-1832
angioblastic mesenchymal cell9.63e-1832
hematopoietic multipotent progenitor cell9.63e-1832
somatic cell4.12e-17118
connective tissue cell3.60e-1646
mesenchymal cell3.60e-1646
animal cell6.29e-16115
eukaryotic cell6.29e-16115
motile cell4.53e-1554
hematopoietic lineage restricted progenitor cell1.06e-1425
stem cell1.92e-1297
lymphoid lineage restricted progenitor cell2.18e-1112
T cell1.66e-1011
pro-T cell1.66e-1011
lymphocyte2.01e-1013
common lymphoid progenitor2.01e-1013
leukocyte2.71e-1017
nongranular leukocyte2.71e-1017
somatic stem cell1.44e-0991
multi fate stem cell1.44e-0991
nucleate cell1.82e-0916
mature alpha-beta T cell3.10e-099
alpha-beta T cell3.10e-099
immature T cell3.10e-099
mature T cell3.10e-099
immature alpha-beta T cell3.10e-099
common myeloid progenitor9.67e-0919
CD4-positive, alpha-beta T cell2.23e-088
epithelial cell5.01e-0825
myeloid cell5.96e-0716
endo-epithelial cell8.13e-0715
thymocyte9.38e-076
double negative thymocyte9.38e-076
naive T cell9.38e-076
double-positive, alpha-beta thymocyte9.38e-076
CD4-positive, alpha-beta thymocyte9.38e-076
naive thymus-derived CD4-positive, alpha-beta T cell9.38e-076
DN4 thymocyte9.38e-076
DN1 thymic pro-T cell9.38e-076
DN2 thymocyte9.38e-076
DN3 thymocyte9.38e-076
immature single positive thymocyte9.38e-076
early T lineage precursor9.38e-076
mature CD4 single-positive thymocyte9.38e-076
resting double-positive thymocyte9.38e-076
double-positive blast9.38e-076
CD69-positive double-positive thymocyte9.38e-076
CD69-positive, CD4-positive single-positive thymocyte9.38e-076
CD4-positive, CD8-intermediate double-positive thymocyte9.38e-076
CD24-positive, CD4 single-positive thymocyte9.38e-076

Uber Anatomy
Ontology termp-valuen
connective tissue3.60e-1646
hemolymphoid system2.54e-1148
immune system2.54e-1148
hematopoietic system2.14e-1045
blood island2.14e-1045
unilaminar epithelium5.50e-0766
mucosa8.81e-0715


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.17.14479e-11
MA0004.10.0275
MA0006.10.0614004
MA0007.10.0215143
MA0009.10.115206
MA0014.17.37842e-07
MA0017.11.22952
MA0019.10.344528
MA0024.10.221199
MA0025.10.100139
MA0027.11.2451
MA0028.10.341183
MA0029.10.380917
MA0030.10.203233
MA0031.10.327637
MA0038.10.841474
MA0040.12.1757
MA0041.16.21971
MA0042.14.19488
MA0043.10.190366
MA0046.10.140744
MA0048.17.17569e-05
MA0050.10.404777
MA0051.10.165162
MA0052.10.560666
MA0055.15.81685e-06
MA0056.10
MA0057.10.0208512
MA0058.10.0474858
MA0059.11.17785
MA0060.10.13345
MA0061.10.000213024
MA0063.10
MA0066.10.138472
MA0067.10.153392
MA0068.10.223231
MA0069.10.129725
MA0070.11.23859
MA0071.10.562963
MA0072.10.117053
MA0073.15.81954e-05
MA0074.10.0448002
MA0076.10.207459
MA0077.10.764604
MA0078.10.36167
MA0081.10.317757
MA0083.10.422421
MA0084.10.96242
MA0087.10.991428
MA0088.19.55692e-05
MA0089.10
MA0090.10.121925
MA0091.11.29049
MA0092.10.122426
MA0093.10.0296421
MA0095.10
MA0098.10
MA0100.10.161096
MA0101.10.00674834
MA0103.10.183909
MA0105.16.36058e-05
MA0106.11.0931
MA0107.10.000350278
MA0108.20.617364
MA0109.10
MA0111.10.0439714
MA0113.10.18345
MA0114.10.231502
MA0115.10.428384
MA0116.10.0355028
MA0117.10.0429412
MA0119.10.0171194
MA0122.10.719527
MA0124.10.79396
MA0125.10.093345
MA0130.10
MA0131.10.53454
MA0132.10
MA0133.10
MA0135.19.28135
MA0136.10.214491
MA0139.10.297597
MA0140.10.160917
MA0141.10.106301
MA0142.10.782987
MA0143.10.537312
MA0144.10.178308
MA0145.10.000222947
MA0146.12.85159e-07
MA0147.10.159351
MA0148.10.331579
MA0149.13.08969
MA0062.20.0604547
MA0035.20.422762
MA0039.22.35621e-11
MA0138.20.0259515
MA0002.20.065219
MA0137.21.09635
MA0104.20.0955832
MA0047.20.418043
MA0112.20.00159964
MA0065.20.0745978
MA0150.10.0474263
MA0151.10
MA0152.10.609516
MA0153.10.882914
MA0154.10.00272966
MA0155.10.00769442
MA0156.10.0867389
MA0157.10.675622
MA0158.10
MA0159.10.572088
MA0160.10.0763697
MA0161.10
MA0162.12.54832e-07
MA0163.15.13594e-05
MA0164.10.718216
MA0080.20.00953916
MA0018.20.233404
MA0099.20.0749813
MA0079.24.82164e-17
MA0102.20.40788
MA0258.10.0566479
MA0259.10.0189341
MA0442.10
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