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MCL coexpression mm9:1586: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000988!6.58e-25!32;CL:0002032!6.58e-25!32;CL:0000037!6.58e-25!32;CL:0000566!6.58e-25!32;CL:0000837!6.58e-25!32;CL:0002320!2.87e-18!46;CL:0000134!2.87e-18!46;CL:0002031!2.10e-17!25;CL:0000034!2.03e-15!97;CL:0000049!1.26e-14!19;CL:0000219!1.88e-14!54;CL:0000723!1.71e-13!91;CL:0000048!1.71e-13!91;CL:0002242!1.25e-12!16;CL:0000838!2.71e-12!12;CL:0000738!1.19e-11!17;CL:0002087!1.19e-11!17;CL:0000542!3.69e-11!13;CL:0000051!3.69e-11!13;CL:0000084!1.04e-10!11;CL:0000827!1.04e-10!11;CL:0000763!1.27e-10!16;CL:0002371!4.75e-09!118;CL:0000791!2.23e-08!9;CL:0000789!2.23e-08!9;CL:0002420!2.23e-08!9;CL:0002419!2.23e-08!9;CL:0000790!2.23e-08!9;CL:0000624!4.41e-07!8;CL:0000548!5.11e-07!115;CL:0000255!5.11e-07!115;CL:0000839!6.62e-07!13
|ontology_enrichment_disease=DOID:0050686!1.72e-07!6
|ontology_enrichment_uberon=UBERON:0002384!2.87e-18!46;UBERON:0002371!5.05e-07!16
}}
}}

Revision as of 17:07, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:74643393..74643404,-p@chr11:74643393..74643404
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Mm9::chr13:45487133..45487148,+p@chr13:45487133..45487148
+
Mm9::chr13:45487149..45487163,+p@chr13:45487149..45487163
+
Mm9::chr1:7078792..7078799,-p@chr1:7078792..7078799
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Mm9::chr4:125880239..125880256,+p@chr4:125880239..125880256
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen
hematopoietic cell6.58e-2532
hematopoietic oligopotent progenitor cell6.58e-2532
hematopoietic stem cell6.58e-2532
angioblastic mesenchymal cell6.58e-2532
hematopoietic multipotent progenitor cell6.58e-2532
connective tissue cell2.87e-1846
mesenchymal cell2.87e-1846
hematopoietic lineage restricted progenitor cell2.10e-1725
stem cell2.03e-1597
common myeloid progenitor1.26e-1419
motile cell1.88e-1454
somatic stem cell1.71e-1391
multi fate stem cell1.71e-1391
nucleate cell1.25e-1216
lymphoid lineage restricted progenitor cell2.71e-1212
leukocyte1.19e-1117
nongranular leukocyte1.19e-1117
lymphocyte3.69e-1113
common lymphoid progenitor3.69e-1113
T cell1.04e-1011
pro-T cell1.04e-1011
myeloid cell1.27e-1016
somatic cell4.75e-09118
mature alpha-beta T cell2.23e-089
alpha-beta T cell2.23e-089
immature T cell2.23e-089
mature T cell2.23e-089
immature alpha-beta T cell2.23e-089
CD4-positive, alpha-beta T cell4.41e-078
animal cell5.11e-07115
eukaryotic cell5.11e-07115
myeloid lineage restricted progenitor cell6.62e-0713

Uber Anatomy
Ontology termp-valuen
connective tissue2.87e-1846
bone marrow5.05e-0716

Disease
Ontology termp-valuen
organ system cancer1.72e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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