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|coexpression_dpi_cluster_scores_median=0.170392729704821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0682179984609265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514985917256918,0.0419359757688424,0,0,0,0,0.0771606661507038,0.0568996784870888,0,0,0,0,0,0,0,0.206002197103771,0.313441563167376,0.40165777690794,0,0,0,0,0,0,0.141204588184303,0.330532627013832,0.499700140572398,0.428555870196111,0.135295723241145,0.323116468687679,0.391950814824183,0.457588343702056,0.608991844739305,0,0.052188704109448,0.0620577069359474,0.21995931373127,0.321774788881763,0.34774063504272,0.0459687473537346,0.193893011938994,0.115808975689988,0.332285284317888,0.539987771128504,0.423391992944096,0,0.0316393102377815,0,0,0,0,0,0,0,0,0,0,0.0572260417947564,0,0,0,0,0,0,0,0,0,0.129358133846345,0,0,0.06097065795378,0.0482820047261801,0,0,0,0,0,0,0,0,0.111524892460631,0.0825867363219064,0,0,0,0,0.0606187686764715,0.163608743054207,0.786078423011133,0.182264238536694,0.179388300989621,0,0.0043323587132837,0.0548189631213279,0,0.0978549673988937,0,0.0531247310291112,0.164294611462054,0.133578586898209,0.0609639314262262,0.104536955558926,0.179682427843873,0.0388988969149198,0.0999233952154288,0.0847792561696249,0.244629442017072,0.0703892716151147,0.0860734338295156,0.106546909924599,0,0,0.0788315948399074,0,0,0,0.0817525223528981,0.0915002620172692,0,0,0,0,0,0,0.0479619276176895,0,0,0,0,0,0,0.293478688128479,0.816695186795978,0,0,0.0839639919176933,0.165681471080581,0,0,0,0,0,0,0,0,0,0,0,0,0.0754257438189354,0.046982063026719,0,0,0.0769870445726752,0.0829315915550757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0753613107413788,0,0.0680912293502604,0.091558018055706,0,0,0.0774164737207147,0.107210932496761,0.086880916817156,0.0592510773178362,0,0,0,0,0,0,0,0,0.0914641362800683,0,0,0,0,0,0.0320964378653649,0.0873549591356574,0,0,0,0,0.215543090236368,0,0.0711694759496908,0.0655375003561515,0.00535085608641471,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0109405607221333,0.0999282245587464,0.15493316250826,0.0709019855629759,0.0712812415377886,0.0661577744756082,0.115432414129512,0,0,0,0,0.110585048185153,0.0254340553719351,0.0320178737264315,0.00504161613721413,0,0.0738741926906438,0,0.0814866010703366,0.0737896374598673,0,0,0,0,0,0,0,0.212898941335336,0.0194170112847075,0.0445418537893845,0,0,0,0.034489466458534,0,0,0,0,0.0605152268483434,0.124150966176904,0.199577904247741,0.0997909775761048,0.126427630498926,0.130999727855463,0.0531569878936061,0,0,0,0,0,0,0,0,0.0787037500278776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513085342652956,0.453517235932598,0.699861008461702,0.532488741965051,0.165657242032478,0,0.224020645200257,0.278900414858752,0.162308177550168,0.308675506925909,0.0428854115575944,0,0.127580061998599,0.0945084131504676,0.0826465040380816,0.190760324464606,0.215265017278825,0.148042814534696,0.15436648255703,0.245041507634362,0.098117166361508,0.133794275101578,0.181858668595339,0.136654657930254,0.146762969796454,0.229646547188214,0.257964079200789,0.141706336142815,0.349521849431601,0.201068050435521,0.128033729919821,0.0709598546489811,0.092873634605593,0.199037798091534,0.194418948264644,0.0982434449953899,0.129026899181439,0.122630279662904,0.18842684556126,0,0.168656579551575,0.112441925220423,0.148982201447044,0.117229416500102,0.141704700595215,0.29103573718429,0.230907198759394,0.216063761676531,0.0150529567327643,0,0
|coexpression_dpi_cluster_scores_median=0.170392729704821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0682179984609265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0514985917256918,0.0419359757688424,0,0,0,0,0.0771606661507038,0.0568996784870888,0,0,0,0,0,0,0,0.206002197103771,0.313441563167376,0.40165777690794,0,0,0,0,0,0,0.141204588184303,0.330532627013832,0.499700140572398,0.428555870196111,0.135295723241145,0.323116468687679,0.391950814824183,0.457588343702056,0.608991844739305,0,0.052188704109448,0.0620577069359474,0.21995931373127,0.321774788881763,0.34774063504272,0.0459687473537346,0.193893011938994,0.115808975689988,0.332285284317888,0.539987771128504,0.423391992944096,0,0.0316393102377815,0,0,0,0,0,0,0,0,0,0,0.0572260417947564,0,0,0,0,0,0,0,0,0,0.129358133846345,0,0,0.06097065795378,0.0482820047261801,0,0,0,0,0,0,0,0,0.111524892460631,0.0825867363219064,0,0,0,0,0.0606187686764715,0.163608743054207,0.786078423011133,0.182264238536694,0.179388300989621,0,0.0043323587132837,0.0548189631213279,0,0.0978549673988937,0,0.0531247310291112,0.164294611462054,0.133578586898209,0.0609639314262262,0.104536955558926,0.179682427843873,0.0388988969149198,0.0999233952154288,0.0847792561696249,0.244629442017072,0.0703892716151147,0.0860734338295156,0.106546909924599,0,0,0.0788315948399074,0,0,0,0.0817525223528981,0.0915002620172692,0,0,0,0,0,0,0.0479619276176895,0,0,0,0,0,0,0.293478688128479,0.816695186795978,0,0,0.0839639919176933,0.165681471080581,0,0,0,0,0,0,0,0,0,0,0,0,0.0754257438189354,0.046982063026719,0,0,0.0769870445726752,0.0829315915550757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0753613107413788,0,0.0680912293502604,0.091558018055706,0,0,0.0774164737207147,0.107210932496761,0.086880916817156,0.0592510773178362,0,0,0,0,0,0,0,0,0.0914641362800683,0,0,0,0,0,0.0320964378653649,0.0873549591356574,0,0,0,0,0.215543090236368,0,0.0711694759496908,0.0655375003561515,0.00535085608641471,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0109405607221333,0.0999282245587464,0.15493316250826,0.0709019855629759,0.0712812415377886,0.0661577744756082,0.115432414129512,0,0,0,0,0.110585048185153,0.0254340553719351,0.0320178737264315,0.00504161613721413,0,0.0738741926906438,0,0.0814866010703366,0.0737896374598673,0,0,0,0,0,0,0,0.212898941335336,0.0194170112847075,0.0445418537893845,0,0,0,0.034489466458534,0,0,0,0,0.0605152268483434,0.124150966176904,0.199577904247741,0.0997909775761048,0.126427630498926,0.130999727855463,0.0531569878936061,0,0,0,0,0,0,0,0,0.0787037500278776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.513085342652956,0.453517235932598,0.699861008461702,0.532488741965051,0.165657242032478,0,0.224020645200257,0.278900414858752,0.162308177550168,0.308675506925909,0.0428854115575944,0,0.127580061998599,0.0945084131504676,0.0826465040380816,0.190760324464606,0.215265017278825,0.148042814534696,0.15436648255703,0.245041507634362,0.098117166361508,0.133794275101578,0.181858668595339,0.136654657930254,0.146762969796454,0.229646547188214,0.257964079200789,0.141706336142815,0.349521849431601,0.201068050435521,0.128033729919821,0.0709598546489811,0.092873634605593,0.199037798091534,0.194418948264644,0.0982434449953899,0.129026899181439,0.122630279662904,0.18842684556126,0,0.168656579551575,0.112441925220423,0.148982201447044,0.117229416500102,0.141704700595215,0.29103573718429,0.230907198759394,0.216063761676531,0.0150529567327643,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000117!1.54e-13!23;CL:0000337!1.54e-13!23;CL:0000540!5.42e-09!33;CL:0000047!5.42e-09!33;CL:0000031!5.42e-09!33;CL:0000404!5.42e-09!33;CL:0000393!3.42e-07!39;CL:0000211!3.42e-07!39;CL:0000221!4.44e-07!44;CL:0000133!4.44e-07!44;CL:0002319!5.90e-07!43
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002020!1.01e-20!34;UBERON:0001049!6.40e-19!52;UBERON:0005068!6.40e-19!52;UBERON:0006241!6.40e-19!52;UBERON:0007135!6.40e-19!52;UBERON:0002346!7.88e-19!64;UBERON:0003075!7.88e-19!64;UBERON:0007284!7.88e-19!64;UBERON:0010371!2.86e-18!73;UBERON:0000073!3.16e-18!54;UBERON:0003056!3.50e-18!49;UBERON:0001017!3.22e-17!73;UBERON:0003528!5.45e-17!29;UBERON:0002791!5.45e-17!29;UBERON:0001893!5.45e-17!29;UBERON:0004121!7.33e-17!95;UBERON:0000924!7.33e-17!95;UBERON:0006601!7.33e-17!95;UBERON:0001016!9.25e-17!75;UBERON:0003080!1.58e-16!40;UBERON:0002780!1.92e-16!39;UBERON:0001890!1.92e-16!39;UBERON:0006240!1.92e-16!39;UBERON:0000955!7.37e-16!47;UBERON:0006238!7.37e-16!47;UBERON:0002616!3.11e-15!46;UBERON:0000956!1.42e-12!21;UBERON:0001869!1.42e-12!21;UBERON:0000203!1.42e-12!21;UBERON:0010314!1.36e-11!92;UBERON:0002619!1.11e-09!17
}}
}}

Revision as of 17:25, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:69660587..69660602,+p6@Klhl23
Mm9::chrX:156064971..156065008,+p21@Sh3kbp1
Mm9::chrX:162676700..162676714,+p10@Gpm6b
Mm9::chrX:162676716..162676727,+p12@Gpm6b
Mm9::chrX:162676729..162676743,+p6@Gpm6b


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)1.54e-1323
neuroblast (sensu Vertebrata)1.54e-1323
neuron5.42e-0933
neuronal stem cell5.42e-0933
neuroblast5.42e-0933
electrically signaling cell5.42e-0933
electrically responsive cell3.42e-0739
electrically active cell3.42e-0739
ectodermal cell4.44e-0744
neurectodermal cell4.44e-0744
neural cell5.90e-0743

Uber Anatomy
Ontology termp-valuen
gray matter1.01e-2034
neural tube6.40e-1952
neural rod6.40e-1952
future spinal cord6.40e-1952
neural keel6.40e-1952
neurectoderm7.88e-1964
neural plate7.88e-1964
presumptive neural plate7.88e-1964
ecto-epithelium2.86e-1873
regional part of nervous system3.16e-1854
pre-chordal neural plate3.50e-1849
central nervous system3.22e-1773
brain grey matter5.45e-1729
regional part of telencephalon5.45e-1729
telencephalon5.45e-1729
ectoderm-derived structure7.33e-1795
ectoderm7.33e-1795
presumptive ectoderm7.33e-1795
nervous system9.25e-1775
anterior neural tube1.58e-1640
regional part of forebrain1.92e-1639
forebrain1.92e-1639
future forebrain1.92e-1639
brain7.37e-1647
future brain7.37e-1647
regional part of brain3.11e-1546
cerebral cortex1.42e-1221
cerebral hemisphere1.42e-1221
pallium1.42e-1221
structure with developmental contribution from neural crest1.36e-1192
regional part of cerebral cortex1.11e-0917


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}