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MCL coexpression mm9:2150: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0.113811116872049,0.115504473965996,0,0.0166660626832929,0,0,0.060863958254401,0,0.065166339349766,0,0,0,0.0341089992304632,0,0,0,0,0,0,0,0,0,0,0.0567608010446655,0.255078916536238,0,0,0,0.0403437855364229,0,0,0,0,0,0,0.069575824586588,0.07391661844832,0.0365927089968535,0.125501532238567,0.658758242755934,0.211652113967647,0.109909536590806,0.401868920925154,0.588277454879422,0,0,0,0.0401351934615191,0,0.0403004758485902,1.16755963425044,1.22594669871407,1.15532377395831,0,0.138149864174094,0,0,0,0.300747685623508,0.38340083633704,0.581219581800355,0.697574363411856,0.713906673440763,0.353997349823236,0.358480358027563,0.7466031920603,0.664248839623256,0.760340900366504,0,0.026094352054724,0,0.781379047399001,0.81116917967239,0.747084921506987,0.00346418817829672,0.210677485948874,0.115808975689988,0.343628054871426,0.437182801303158,1.21318941246729,0.216078752837731,0.292614554732734,0,0,0,0,0,0,0,0.0136896709040583,0.0408584913746131,0,0.0265286054151196,0.12927598703054,0,0,0.0781203800111505,0.127704386339228,0.0888439057459905,0,0,0,0,0.053266552689774,0,0,0,0,0,0,0,0.0434248407357785,0,0,0,0,0,0,0,0,0.0392389656957593,0.0303093843382358,0,0.863196602996563,0.17941127145157,0.049445620134025,0.0819907263755358,0.226594607956262,0,0.0254617646470484,0,0,0.0981262054796601,0.341339848682434,0.297878174837632,0.202956292286968,0.0988738107289339,0.0261764406050477,0.0789659333691799,0,0,0.0376102998814686,0,0,0,0,0.0812688455295622,0,0,0,0,0,0,0.0167871204147317,0,0,0,0,0,0,0,0,0,0,0,0,0.212237941162295,0.559103084447052,0,0,0,0,0.0579933038616385,0,0,0,0,0,0,0,0,0,0,0,0.0377128719094677,0,0,0,0,0,0.0133149461563917,0,0,0,0,0.10062905815985,0.0759672653810765,0.061951620540891,0.0239472982101667,0,0,0.00490454528570046,0,0.00267823191815624,0,0.068699362409361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120743992948411,0,0,0,0,0,0.0423637962789889,0,0.0300215202254984,0,0.078791710909504,0,0,0.118273614591243,0.0542622456065255,0,0,0,0,0,0,0.0570167486671882,0,0,0,0.0173307915240523,0,0,0,0,0,0.160575165238512,0.161761641244784,0.0696340502407169,0,0,0,0,0.190830968997003,0.133272039767867,0,0.0331417600494206,0.0432690494900226,0.0361136912019673,0.0489745727197172,0.059601905799195,0,0.0369370963453219,0,0,0.0368948187299337,0.0972717909123075,0,0,0,0,0,0,0,0,0,0.0258630051739685,0,0.00185331563620776,0.017244733229267,0,0,0,0,0,0.0120733318767681,0,0,0,0,0,0,0,0,0,0,0,0,0.0164562709867525,0,0,0.00619628401010455,0,0,0,0.0201939307380272,0,0,0.0755740665382788,0.110832005933986,0.1586728986839,0.30221688097591,0,0.143723087109499,0,0.0421752250554017,0,0.312442127110417,0.0822247952518535,0.0983499368221695,0.0980451111556276,0.0633084355176685,0,0,0.080732098131109,0.081154088775084,0.0405994448768039,0.430289932242721,0.793477740345894,0.63963871012588,0.258779760274981,0.155671954136335,0.119696547433277,0.249048427323574,0.252161953973214,0.206871465014209,0.274203987680086,0.260629532975024,0.211745907706985,0.172834723622132,0.198061584435595,0.248188471951338,0.229891621240312,0.127966471894565,0.21748428053425,0.14986111676545,0.288762377511597,0.266994144351056,0.250134719616833,0.151840461736226,0.246088457357252,0.256389766596569,0.200262140358192,0.162697864073649,0.17704421375361,0.253915635049001,0.193442483447008,0.202263507572545,0.165236813643555,0.253777656879814,0.247306973418072,0.109155573003225,0.452500314139682,0.093419839144866,0.185660734839627,0.118826198209831,0,0
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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000221!9.11e-13!44;CL:0000133!9.11e-13!44;CL:0000055!9.34e-13!49;CL:0002319!9.47e-13!43;CL:0000117!2.20e-12!23;CL:0000337!2.20e-12!23;CL:0000393!8.15e-08!39;CL:0000211!8.15e-08!39;CL:0000540!1.10e-07!33;CL:0000047!1.10e-07!33;CL:0000031!1.10e-07!33;CL:0000404!1.10e-07!33;CL:0002321!1.36e-07!70;CL:0000333!6.90e-07!10;CL:0000095!6.90e-07!10;CL:0000243!6.90e-07!10;CL:0000123!6.90e-07!10;CL:0000125!6.90e-07!10;CL:0000030!6.90e-07!10;CL:0000339!6.90e-07!10
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0004121!9.84e-15!95;UBERON:0000924!9.84e-15!95;UBERON:0006601!9.84e-15!95;UBERON:0002020!3.77e-14!34;UBERON:0001016!8.07e-14!75;UBERON:0001017!8.14e-13!73;UBERON:0002346!1.43e-12!64;UBERON:0003075!1.43e-12!64;UBERON:0007284!1.43e-12!64;UBERON:0001049!4.56e-12!52;UBERON:0005068!4.56e-12!52;UBERON:0006241!4.56e-12!52;UBERON:0007135!4.56e-12!52;UBERON:0010371!6.02e-12!73;UBERON:0000073!5.33e-11!54;UBERON:0003528!9.13e-11!29;UBERON:0002791!9.13e-11!29;UBERON:0001893!9.13e-11!29;UBERON:0003056!1.33e-10!49;UBERON:0000955!2.32e-09!47;UBERON:0006238!2.32e-09!47;UBERON:0003080!2.44e-09!40;UBERON:0002780!2.71e-09!39;UBERON:0001890!2.71e-09!39;UBERON:0006240!2.71e-09!39;UBERON:0002616!4.58e-09!46;UBERON:0000956!5.34e-08!21;UBERON:0001869!5.34e-08!21;UBERON:0000203!5.34e-08!21
}}
}}

Revision as of 18:00, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:75956968..75956980,-p1@BC024139
Mm9::chr16:77421914..77421929,-p@chr16:77421914..77421929
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Mm9::chr19:36994096..36994112,-p2@Fgfbp3
Mm9::chr19:36994121..36994136,-p1@Fgfbp3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
ectoderm-derived structure9.84e-1595
ectoderm9.84e-1595
presumptive ectoderm9.84e-1595
gray matter3.77e-1434
nervous system8.07e-1475
central nervous system8.14e-1373
neurectoderm1.43e-1264
neural plate1.43e-1264
presumptive neural plate1.43e-1264
neural tube4.56e-1252
neural rod4.56e-1252
future spinal cord4.56e-1252
neural keel4.56e-1252
ecto-epithelium6.02e-1273
regional part of nervous system5.33e-1154
brain grey matter9.13e-1129
regional part of telencephalon9.13e-1129
telencephalon9.13e-1129
pre-chordal neural plate1.33e-1049
brain2.32e-0947
future brain2.32e-0947
anterior neural tube2.44e-0940
regional part of forebrain2.71e-0939
forebrain2.71e-0939
future forebrain2.71e-0939
regional part of brain4.58e-0946
cerebral cortex5.34e-0821
cerebral hemisphere5.34e-0821
pallium5.34e-0821


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}