MCL coexpression mm9:2709

Phase1 CAGE Peaks

	Short description
Mm9::chr11:70053296..70053362,-	p1@0610010K14Rik p1@Rnasek
Mm9::chr6:87995184..87995262,-	p1@Rab7
Mm9::chrX:71542459..71542517,+	p1@Atp6ap1

Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

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GO ID	GO name	FDR corrected p-value
GO:0005773	vacuole	0.0405662508773835
GO:0005770	late endosome	0.0492859180089742
GO:0015985	energy coupled proton transport, down electrochemical gradient	0.0492859180089742
GO:0015986	ATP synthesis coupled proton transport	0.0492859180089742
GO:0006754	ATP biosynthetic process	0.0492859180089742
GO:0006753	nucleoside phosphate metabolic process	0.0492859180089742
GO:0046933	hydrogen ion transporting ATP synthase activity, rotational mechanism	0.0492859180089742
GO:0016469	proton-transporting two-sector ATPase complex	0.0492859180089742
GO:0046961	hydrogen ion transporting ATPase activity, rotational mechanism	0.0492859180089742
GO:0046034	ATP metabolic process	0.0492859180089742
GO:0009206	purine ribonucleoside triphosphate biosynthetic process	0.0492859180089742
GO:0009201	ribonucleoside triphosphate biosynthetic process	0.0492859180089742
GO:0009145	purine nucleoside triphosphate biosynthetic process	0.0492859180089742
GO:0019829	cation-transporting ATPase activity	0.0492859180089742
GO:0009142	nucleoside triphosphate biosynthetic process	0.0492859180089742
GO:0009205	purine ribonucleoside triphosphate metabolic process	0.0492859180089742
GO:0009199	ribonucleoside triphosphate metabolic process	0.0492859180089742
GO:0009144	purine nucleoside triphosphate metabolic process	0.0492859180089742
GO:0006119	oxidative phosphorylation	0.0492859180089742
GO:0015992	proton transport	0.0492859180089742
GO:0006752	group transfer coenzyme metabolic process	0.0492859180089742
GO:0009141	nucleoside triphosphate metabolic process	0.0492859180089742
GO:0009152	purine ribonucleotide biosynthetic process	0.0492859180089742
GO:0006818	hydrogen transport	0.0492859180089742
GO:0009260	ribonucleotide biosynthetic process	0.0492859180089742
GO:0009150	purine ribonucleotide metabolic process	0.0492859180089742
GO:0006164	purine nucleotide biosynthetic process	0.0492859180089742

Relative expression of the co-expression cluster over median <br>Analyst:

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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

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Cell Type

Ontology term	p-value	n
non-terminally differentiated cell	1.98e-07	49

Uber Anatomy

Ontology term	p-value	n
nervous system	1.67e-14	75
central nervous system	1.25e-13	73
ectoderm-derived structure	4.01e-13	95
ectoderm	4.01e-13	95
presumptive ectoderm	4.01e-13	95
adult organism	2.02e-12	51
regional part of nervous system	4.67e-12	54
anatomical conduit	5.31e-12	122
neural tube	2.97e-11	52
neural rod	2.97e-11	52
future spinal cord	2.97e-11	52
neural keel	2.97e-11	52
tube	1.22e-10	114
brain	6.84e-10	47
future brain	6.84e-10	47
regional part of brain	2.00e-09	46
neurectoderm	1.46e-08	64
neural plate	1.46e-08	64
presumptive neural plate	1.46e-08	64
structure with developmental contribution from neural crest	1.47e-08	92
ecto-epithelium	1.92e-08	73
gray matter	8.34e-08	34
anterior neural tube	6.42e-07	40

TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

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Novel motifs

JASPAR motifs

Motifs	-log10(p-value)
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