Personal tools

MCL coexpression mm9:3676: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 3: Line 3:
|coexpression_dpi_cluster_scores_median=-0.0613093531898391,-0.1792397770908,-0.0191184517221424,-0.181981218013818,-0.181981218013818,0.144391091257061,-0.0880609662276609,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.1792397770908,-0.126177045865435,-0.181981218013818,0.0434175815033661,-0.181981218013818,-0.181981218013818,0.0389678817437284,-0.0895432897139293,-0.1792397770908,-0.132059446848922,-0.0263590458011283,-0.181981218013818,-0.1792397770908,-0.1792397770908,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.374280816416229,0.18535180649078,0.301134240629797,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.120603922343707,-0.0765876845372036,-0.0434415573123675,-0.15092502038214,0.451226475432469,0.81832847516577,1.00241469822352,0.147073830387905,-0.0149788915299353,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.660675928437134,0.567747243083506,0.484433322974172,0.0782626072680852,0.00242370515917173,0.173597259040848,-0.0298674469223731,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.1792397770908,0.162867025620405,0.452225646859615,0.305693292712942,0.236331885288889,0.132858164508077,0.0868196828075437,0.0400729639664923,0.0282475558066588,0.077035715367045,-0.1792397770908,-0.0794692063241008,0.126433690295511,0.104432072235919,-0.0126292215129704,-0.0995183409078332,0.000123259838902989,0.0134296866731604,0.145485044368302,0.103334641576631,0.211267997730296,0.148224175180125,0.108186888296345,-0.181981218013818,-0.150341907776037,0.968248012894592,0.542468284263411,0.300880079619305,1.04499970290079,1.10117838245708,0.831803111531895,0.399947944088668,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.118718460011246,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.342076200830791,0.396309330166004,0.556558923836172,0.390938352876512,-0.0932033140147358,0.382916546577618,-0.112503554453591,-0.120123124414693,-0.118070323184361,0.0226185662324297,0.000961184660325132,0.195021158296091,-0.181981218013818,-0.165643617876696,-0.181981218013818,-0.116862237929311,-0.181981218013818,-0.181981218013818,0.274979302224749,0.192222162188983,0.14379462718952,-0.0027414409230189,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.129462059300663,0.307130226896565,-0.127834722290257,0.531659133743096,0.502480993329075,0.169569331430901,0.239461250891407,-0.0308353589796006,0.0308204046739016,0.0783350547240186,0.600194752857121,0,0.0850856344431488,0.144721882646477,0.201659708475813,0.218144497139871,0.387832267146291,0.215824589078646,0.305104383362589,-0.0263003158367346,0.0159174108659801,0.0521799830026319,-0.0213626797159036,0.142751557893153,-0.172373111644515,-0.0527102515397767,-0.0364527568682172,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.309247520349108,0.538552933464641,0.68421229028036,0.878303412673779,0.928168765791546,0.797783419125478,0.69645512001726,0.736865639968035,0.903283772030464,0.543275364280613,0.484619783747208,0.366454826367418,0.283248041069163,0.515532270754081,0.368237587363259,0.478403152387878,0.223462337027835,-0.181981218013818,-0.148262616051727,-0.181981218013818,-0.0162997469332373,0.0458722981576848,-0.0994496701617771,0.00574256589674488,-0.0712396651683169,-0.1792397770908,-0.115767532306289,0.0647912050469215,-0.0365010917271205,-0.0389888597294742,-0.1792397770908,0.0350851157429339,0.0214389380526777,-0.156743333501363,-0.0157819987366121,-0.181981218013818,-0.0308522698754126,0.019927570293555,0.0332733938788484,-0.0233114896258727,-0.00815964515242723,-0.0193728236363714,-0.128706453949703,0.90491325317555,-0.1792397770908,-0.0352518765073303,0.00868632700480243,0.133912858359511,0.114058377695766,0.232562896412596,0.217651207370407,0.181936686464244,0.450955351532764,0.801468807724302,0.524559391563612,0.730605688291226,0.952480985779694,1.01914227803315,0.954288254995762,-0.105611890299747,-0.181981218013818,-0.00911716715483102,-0.0550416866743665,-0.0148469469570728,-0.00516131127153768,-0.111409435158586,-0.0361414704379801,-0.118409515158791,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.123308862589745,-0.181981218013818,-0.181981218013818,-0.1792397770908,-0.181981218013818,0.238708596041515,0.133552009683863,-0.181981218013818,-0.181981218013818,0.528467210227437,0.629923279586638,0.417682196668391,0.350919946183993,0.298631878546578,0.111903520571722,0.644713465256546,0.59661447607514,0.413252965586739,0.23683571049776,0.564433227117195,0.00664129859086815,0.0386513805455793,0.116832734739743,0.184899400042662,0.162807437016493,-0.0645208807639714,0.109238700543304,0.0962801911251897,0.222369332040844,0.30479292528614,0.323351521177213,0.442143678662369,0.365583555959405,0.310551794158854,0.454687994804493,0.207020960663834,0.00833262794418671,-0.129149322459051,-0.133034769614405,-0.111079232450843,-0.11069997647603,-0.141202144726451,0.0493654145272675,0.370987866194774,0.248522204347577,0.232340146735405,-0.115697697914977,-0.181981218013818,-0.156547162641883,-0.181981218013818,-0.1792397770908,0.0202306227410285,0.216353331087612,-0.0543122806502433,0.307030369988145,0.457599173399856,0.061918070064064,0.00744646261602505,0.195997386134389,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.0618665776850088,-0.0626144613090867,-0.0310571430426138,-0.001895522895691,-0.0302509052425139,-0.0962046719145243,0.106726307433553,0.0962431757798919,0.0502098785290439,0.0678747722340129,0.374098220621674,-0.181981218013818,-0.181981218013818,-0.1792397770908,-0.102071370234682,-0.181981218013818,-0.11418300695021,0.0212786358919002,-0.036033443804777,0.210369361060329,0.0547455304797023,-0.072055237443116,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.1792397770908,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.192257945556143,0.218953751431501,0.056718720605067,0.0364255763997024,-0.00316954070941561,0.519330332267529,0.446306909020224,0.255119360008359,0.163769254658363,0.463972549913056,0.499912690130964,0.521321769921758,0.681609087827268,0.595051479086806,0.573564592341947,-0.100067214245646,0.0744867755163685,-0.113523133114573,-0.00715859444171979,0.0584462549544042,-0.0426800445635725,-0.0195241985131058,-0.0141387844628717,0.179394870099639,0.0630602896205437,0.0636394917070607,-0.040226150075568,-0.0438156111762397,0.0131502845531176,0.0457064435285569,0.0612441782869079,-0.00286102786647646,-0.105373822584678,-0.0321201012483685,-0.0639516999265484,0.044808988844948,-0.0500574319386111,-0.061051685490068,0.0588951274038431,0.0872234558084726,0,0.00800961259384692,0.0706798886631006,0.0458162395047043,0.147563834004807,-0.0133246384622434,0.0561936162036751,0.0777230327355901,0.0671398662372076,-0.040276517418603,-0.00418555697442063,0.0516674216685946,0.0368239845857316,-0.105964329854828,-0.1792397770908,-0.0886756612589121
|coexpression_dpi_cluster_scores_median=-0.0613093531898391,-0.1792397770908,-0.0191184517221424,-0.181981218013818,-0.181981218013818,0.144391091257061,-0.0880609662276609,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.1792397770908,-0.126177045865435,-0.181981218013818,0.0434175815033661,-0.181981218013818,-0.181981218013818,0.0389678817437284,-0.0895432897139293,-0.1792397770908,-0.132059446848922,-0.0263590458011283,-0.181981218013818,-0.1792397770908,-0.1792397770908,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.374280816416229,0.18535180649078,0.301134240629797,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.120603922343707,-0.0765876845372036,-0.0434415573123675,-0.15092502038214,0.451226475432469,0.81832847516577,1.00241469822352,0.147073830387905,-0.0149788915299353,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.660675928437134,0.567747243083506,0.484433322974172,0.0782626072680852,0.00242370515917173,0.173597259040848,-0.0298674469223731,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.1792397770908,0.162867025620405,0.452225646859615,0.305693292712942,0.236331885288889,0.132858164508077,0.0868196828075437,0.0400729639664923,0.0282475558066588,0.077035715367045,-0.1792397770908,-0.0794692063241008,0.126433690295511,0.104432072235919,-0.0126292215129704,-0.0995183409078332,0.000123259838902989,0.0134296866731604,0.145485044368302,0.103334641576631,0.211267997730296,0.148224175180125,0.108186888296345,-0.181981218013818,-0.150341907776037,0.968248012894592,0.542468284263411,0.300880079619305,1.04499970290079,1.10117838245708,0.831803111531895,0.399947944088668,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.118718460011246,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.342076200830791,0.396309330166004,0.556558923836172,0.390938352876512,-0.0932033140147358,0.382916546577618,-0.112503554453591,-0.120123124414693,-0.118070323184361,0.0226185662324297,0.000961184660325132,0.195021158296091,-0.181981218013818,-0.165643617876696,-0.181981218013818,-0.116862237929311,-0.181981218013818,-0.181981218013818,0.274979302224749,0.192222162188983,0.14379462718952,-0.0027414409230189,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.129462059300663,0.307130226896565,-0.127834722290257,0.531659133743096,0.502480993329075,0.169569331430901,0.239461250891407,-0.0308353589796006,0.0308204046739016,0.0783350547240186,0.600194752857121,0,0.0850856344431488,0.144721882646477,0.201659708475813,0.218144497139871,0.387832267146291,0.215824589078646,0.305104383362589,-0.0263003158367346,0.0159174108659801,0.0521799830026319,-0.0213626797159036,0.142751557893153,-0.172373111644515,-0.0527102515397767,-0.0364527568682172,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.309247520349108,0.538552933464641,0.68421229028036,0.878303412673779,0.928168765791546,0.797783419125478,0.69645512001726,0.736865639968035,0.903283772030464,0.543275364280613,0.484619783747208,0.366454826367418,0.283248041069163,0.515532270754081,0.368237587363259,0.478403152387878,0.223462337027835,-0.181981218013818,-0.148262616051727,-0.181981218013818,-0.0162997469332373,0.0458722981576848,-0.0994496701617771,0.00574256589674488,-0.0712396651683169,-0.1792397770908,-0.115767532306289,0.0647912050469215,-0.0365010917271205,-0.0389888597294742,-0.1792397770908,0.0350851157429339,0.0214389380526777,-0.156743333501363,-0.0157819987366121,-0.181981218013818,-0.0308522698754126,0.019927570293555,0.0332733938788484,-0.0233114896258727,-0.00815964515242723,-0.0193728236363714,-0.128706453949703,0.90491325317555,-0.1792397770908,-0.0352518765073303,0.00868632700480243,0.133912858359511,0.114058377695766,0.232562896412596,0.217651207370407,0.181936686464244,0.450955351532764,0.801468807724302,0.524559391563612,0.730605688291226,0.952480985779694,1.01914227803315,0.954288254995762,-0.105611890299747,-0.181981218013818,-0.00911716715483102,-0.0550416866743665,-0.0148469469570728,-0.00516131127153768,-0.111409435158586,-0.0361414704379801,-0.118409515158791,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.123308862589745,-0.181981218013818,-0.181981218013818,-0.1792397770908,-0.181981218013818,0.238708596041515,0.133552009683863,-0.181981218013818,-0.181981218013818,0.528467210227437,0.629923279586638,0.417682196668391,0.350919946183993,0.298631878546578,0.111903520571722,0.644713465256546,0.59661447607514,0.413252965586739,0.23683571049776,0.564433227117195,0.00664129859086815,0.0386513805455793,0.116832734739743,0.184899400042662,0.162807437016493,-0.0645208807639714,0.109238700543304,0.0962801911251897,0.222369332040844,0.30479292528614,0.323351521177213,0.442143678662369,0.365583555959405,0.310551794158854,0.454687994804493,0.207020960663834,0.00833262794418671,-0.129149322459051,-0.133034769614405,-0.111079232450843,-0.11069997647603,-0.141202144726451,0.0493654145272675,0.370987866194774,0.248522204347577,0.232340146735405,-0.115697697914977,-0.181981218013818,-0.156547162641883,-0.181981218013818,-0.1792397770908,0.0202306227410285,0.216353331087612,-0.0543122806502433,0.307030369988145,0.457599173399856,0.061918070064064,0.00744646261602505,0.195997386134389,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.0618665776850088,-0.0626144613090867,-0.0310571430426138,-0.001895522895691,-0.0302509052425139,-0.0962046719145243,0.106726307433553,0.0962431757798919,0.0502098785290439,0.0678747722340129,0.374098220621674,-0.181981218013818,-0.181981218013818,-0.1792397770908,-0.102071370234682,-0.181981218013818,-0.11418300695021,0.0212786358919002,-0.036033443804777,0.210369361060329,0.0547455304797023,-0.072055237443116,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.181981218013818,-0.1792397770908,-0.181981218013818,-0.181981218013818,-0.181981218013818,0.192257945556143,0.218953751431501,0.056718720605067,0.0364255763997024,-0.00316954070941561,0.519330332267529,0.446306909020224,0.255119360008359,0.163769254658363,0.463972549913056,0.499912690130964,0.521321769921758,0.681609087827268,0.595051479086806,0.573564592341947,-0.100067214245646,0.0744867755163685,-0.113523133114573,-0.00715859444171979,0.0584462549544042,-0.0426800445635725,-0.0195241985131058,-0.0141387844628717,0.179394870099639,0.0630602896205437,0.0636394917070607,-0.040226150075568,-0.0438156111762397,0.0131502845531176,0.0457064435285569,0.0612441782869079,-0.00286102786647646,-0.105373822584678,-0.0321201012483685,-0.0639516999265484,0.044808988844948,-0.0500574319386111,-0.061051685490068,0.0588951274038431,0.0872234558084726,0,0.00800961259384692,0.0706798886631006,0.0458162395047043,0.147563834004807,-0.0133246384622434,0.0561936162036751,0.0777230327355901,0.0671398662372076,-0.040276517418603,-0.00418555697442063,0.0516674216685946,0.0368239845857316,-0.105964329854828,-0.1792397770908,-0.0886756612589121
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!1.15e-16!92;UBERON:0004111!2.57e-16!122;UBERON:0000025!6.49e-16!114;UBERON:0003914!3.18e-15!47;UBERON:0007100!1.95e-10!18;UBERON:0000948!1.95e-10!18;UBERON:0005498!1.95e-10!18;UBERON:0004140!1.95e-10!18;UBERON:0009881!1.95e-10!18;UBERON:0004141!1.95e-10!18;UBERON:0003084!1.95e-10!18;UBERON:0007005!1.95e-10!18;UBERON:0004139!1.95e-10!18;UBERON:0004291!1.95e-10!18;UBERON:0001017!2.45e-10!73;UBERON:0002346!1.56e-09!64;UBERON:0003075!1.56e-09!64;UBERON:0007284!1.56e-09!64;UBERON:0001016!2.01e-09!75;UBERON:0004872!2.75e-09!33;UBERON:0004535!5.45e-09!23;UBERON:0001009!5.45e-09!23;UBERON:0000477!8.03e-09!244;UBERON:0000468!9.02e-09!333;UBERON:0009854!1.39e-08!23;UBERON:0009856!1.39e-08!23;UBERON:0002107!2.58e-08!22;UBERON:0007499!2.58e-08!22;UBERON:0006925!2.58e-08!22;UBERON:0009497!2.58e-08!22;UBERON:0000015!2.58e-08!22;UBERON:0002423!2.58e-08!22;UBERON:0006235!2.58e-08!22;UBERON:0008835!2.58e-08!22;UBERON:0003894!2.58e-08!22;UBERON:0004161!2.58e-08!22;UBERON:0008836!2.58e-08!22;UBERON:0004121!3.48e-08!95;UBERON:0000924!3.48e-08!95;UBERON:0006601!3.48e-08!95;UBERON:0000956!1.82e-07!21;UBERON:0001869!1.82e-07!21;UBERON:0000203!1.82e-07!21;UBERON:0003103!4.22e-07!43;UBERON:0002365!4.54e-07!25;UBERON:0002330!4.54e-07!25;UBERON:0003056!6.81e-07!49;UBERON:0002020!8.35e-07!34
}}
}}

Revision as of 20:27, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr8:46713271..46713287,+p12@Sorbs2
Mm9::chr8:46713300..46713329,+p6@Sorbs2
Mm9::chr8:46713330..46713355,+p13@Sorbs2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest1.15e-1692
anatomical conduit2.57e-16122
tube6.49e-16114
epithelial tube3.18e-1547
primary circulatory organ1.95e-1018
heart1.95e-1018
primitive heart tube1.95e-1018
primary heart field1.95e-1018
anterior lateral plate mesoderm1.95e-1018
heart tube1.95e-1018
heart primordium1.95e-1018
cardiac mesoderm1.95e-1018
cardiogenic plate1.95e-1018
heart rudiment1.95e-1018
central nervous system2.45e-1073
neurectoderm1.56e-0964
neural plate1.56e-0964
presumptive neural plate1.56e-0964
nervous system2.01e-0975
splanchnic layer of lateral plate mesoderm2.75e-0933
cardiovascular system5.45e-0923
circulatory system5.45e-0923
anatomical cluster8.03e-09244
multi-cellular organism9.02e-09333
digestive tract diverticulum1.39e-0823
sac1.39e-0823
liver2.58e-0822
epithelial sac2.58e-0822
digestive gland2.58e-0822
epithelium of foregut-midgut junction2.58e-0822
anatomical boundary2.58e-0822
hepatobiliary system2.58e-0822
foregut-midgut junction2.58e-0822
hepatic diverticulum2.58e-0822
liver primordium2.58e-0822
septum transversum2.58e-0822
liver bud2.58e-0822
ectoderm-derived structure3.48e-0895
ectoderm3.48e-0895
presumptive ectoderm3.48e-0895
cerebral cortex1.82e-0721
cerebral hemisphere1.82e-0721
pallium1.82e-0721
compound organ4.22e-0743
exocrine gland4.54e-0725
exocrine system4.54e-0725
pre-chordal neural plate6.81e-0749
gray matter8.35e-0734


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:3676&oldid=2156039"