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MCL coexpression mm9:1906: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0010314!1.47e-16!92;UBERON:0000073!3.05e-12!54;UBERON:0002346!1.17e-11!64;UBERON:0003075!1.17e-11!64;UBERON:0007284!1.17e-11!64;UBERON:0004121!2.20e-11!95;UBERON:0000924!2.20e-11!95;UBERON:0006601!2.20e-11!95;UBERON:0010371!3.09e-11!73;UBERON:0001049!4.59e-11!52;UBERON:0005068!4.59e-11!52;UBERON:0006241!4.59e-11!52;UBERON:0007135!4.59e-11!52;UBERON:0001016!1.81e-10!75;UBERON:0001017!2.29e-10!73;UBERON:0002020!2.56e-10!34;UBERON:0003056!3.29e-10!49;UBERON:0003080!5.29e-09!40;UBERON:0000955!5.98e-09!47;UBERON:0006238!5.98e-09!47;UBERON:0000468!6.32e-09!333;UBERON:0002780!1.58e-08!39;UBERON:0001890!1.58e-08!39;UBERON:0006240!1.58e-08!39;UBERON:0002616!1.94e-08!46;UBERON:0003528!6.58e-08!29;UBERON:0002791!6.58e-08!29;UBERON:0001893!6.58e-08!29;UBERON:0003103!1.17e-07!43
|ontology_enrichment_uberon=UBERON:0010314!1.47e-16!92;UBERON:0000073!3.05e-12!54;UBERON:0002346!1.17e-11!64;UBERON:0003075!1.17e-11!64;UBERON:0007284!1.17e-11!64;UBERON:0004121!2.20e-11!95;UBERON:0000924!2.20e-11!95;UBERON:0006601!2.20e-11!95;UBERON:0010371!3.09e-11!73;UBERON:0001049!4.59e-11!52;UBERON:0005068!4.59e-11!52;UBERON:0006241!4.59e-11!52;UBERON:0007135!4.59e-11!52;UBERON:0001016!1.81e-10!75;UBERON:0001017!2.29e-10!73;UBERON:0002020!2.56e-10!34;UBERON:0003056!3.29e-10!49;UBERON:0003080!5.29e-09!40;UBERON:0000955!5.98e-09!47;UBERON:0006238!5.98e-09!47;UBERON:0000468!6.32e-09!333;UBERON:0002780!1.58e-08!39;UBERON:0001890!1.58e-08!39;UBERON:0006240!1.58e-08!39;UBERON:0002616!1.94e-08!46;UBERON:0003528!6.58e-08!29;UBERON:0002791!6.58e-08!29;UBERON:0001893!6.58e-08!29;UBERON:0003103!1.17e-07!43
|tfbs_overrepresentation_for_novel_motifs=0.641384,1.30284,0.612053,0.688265,0.483253,0.704257,0.803568,0.370124,0.381467,0.162942,0.755749,0.790506,0.37041,0.81685,0.502646,0,1.02248,0.473993,0.352304,0.24402,0.570433,0.197567,0.815872,0.481455,0.620553,0.846564,0.342316,0.727368,0.535752,0.290745,0.711848,1.12823,0.471365,0.318879,0.503207,0.089443,0.460474,0.786577,0.434783,0.40068,0.478558,0.717547,0.544696,0.504971,0.325217,0.675898,0.938241,0.744678,0.162985,1.3327,1.0041,0.875451,0.282443,1.2746,1.29252,0.82458,0.549352,0.776619,0.882473,0.822375,1.10737,0.885556,1.02399,0.992216,0.8366,1.03484,1.43193,1.78579,1.1025,1.63712,0.590754,0.377213,0.593145,1.32691,0.323563,0.310084,0.854076,0.926147,1.08947,1.40903,0.37865,1.04072,2.04926,0.951203,1.20828,0.11855,31.7742,0.290918,0.943446,1.94914,1.50286,1.21342,1.14153,0.490141,1.9268,0.409166,0.367176,1.14445,0.938512,0.264911,0.460566,1.12793,1.25667,1.00472,1.00361,0.717061,1.06633,0.740267,0.580757,0.57247,0.633483,1.25851,0.576517,1.79716,1.51002,0.476467,0.143825,1.65428,1.02384,4.06409,1.33244,0.970073,0.848526,0.925183,1.56496,1.09333,0.812403,1.13449,1.43038,0.493609,1.23918,0.680176,1.40022,0.839311,1.53196,12.4343,0.650785,0.719099,1.482,2.31884,1.91709,1.43673,0.861473,1.1391,2.27949,0.718046,0.941555,2.27909,0.653418,0.485304,0.79777,0.184289,1.27621,1.87995,0.838313,1.35996,0.87653,1.28473,1.54212,1.56687,3.27965,1.20739,1.09379,0.630949,0.993294,0.830321,0.459159,3.08813,0.280875
}}
}}

Revision as of 20:36, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:68996341..68996380,+p3@Ank3
Mm9::chr10:68996381..68996414,+p7@Ank3
Mm9::chr10:68996416..68996430,+p12@Ank3
Mm9::chr10:68996450..68996471,+p16@Ank3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
CNS neuron (sensu Vertebrata)4.31e-0823
neuroblast (sensu Vertebrata)4.31e-0823

Uber Anatomy
Ontology termp-valuen
structure with developmental contribution from neural crest1.47e-1692
regional part of nervous system3.05e-1254
neurectoderm1.17e-1164
neural plate1.17e-1164
presumptive neural plate1.17e-1164
ectoderm-derived structure2.20e-1195
ectoderm2.20e-1195
presumptive ectoderm2.20e-1195
ecto-epithelium3.09e-1173
neural tube4.59e-1152
neural rod4.59e-1152
future spinal cord4.59e-1152
neural keel4.59e-1152
nervous system1.81e-1075
central nervous system2.29e-1073
gray matter2.56e-1034
pre-chordal neural plate3.29e-1049
anterior neural tube5.29e-0940
brain5.98e-0947
future brain5.98e-0947
multi-cellular organism6.32e-09333
regional part of forebrain1.58e-0839
forebrain1.58e-0839
future forebrain1.58e-0839
regional part of brain1.94e-0846
brain grey matter6.58e-0829
regional part of telencephalon6.58e-0829
telencephalon6.58e-0829
compound organ1.17e-0743


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}