FFCP PHASE1:Hg19::chr13:113951532..113951594,+: Difference between revisions
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{{FFCP | 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2.652292769663,125.877214137081,184.78395871137,190.432977430309,377.381633147849,264.315640866985,283.139457749832,335.358371616816,397.342697836617,413.275912367416,264.485146469424,240.405093049322,204.480731833181,196.204434103321,217.259868666828,238.634060797887,196.029470692425,270.114220357067,180.739760652708,490.104333874233,356.616490601647,199.689956573903,108.593155949227,105.838195856588,231.973577603119,117.475802388335,233.07813301883,276.262027745903,215.238731971409,61.5171925970565,106.746563282715,227.24928598177,84.5282599606188,99.6329950830128,94.3832645251472,129.388937886398,113.404918348568,401.639494875268,36.3552644455778,119.285041494535,361.845518226642,419.862549451237,217.801302302094,160.117131247911,216.463512881497,269.522902612352,129.06070846552,279.533614460369,263.043826734285,629.613143342871,441.861028691617,203.969651668243,387.217771479264,313.421132265868,434.775588832571,89.056430461753,413.546825779735,234.581014121333,220.665345161651,347.773734998726,221.834970225765,224.367526988833,172.400196529075,221.388202379098,220.264023809105,210.613845634707,239.58493091258,91.8917679150609,480.273803766892,294.253228784852,62.0825492589461,533.663660250589,324.635312542242,184.619763498134,287.094730803927,206.94493193833,375.831942379101,72.9431141228083,361.153747875203,258.217015578984,238.163213071077,125.167277496122,154.722880031868,238.540509172712,164.814253821886,244.957870736252,137.886966796934,177.06062479927,53.5081890433496,197.346738471748,73.0022886205197,118.566253875488,61.7196866674157,284.60753447924,360.556125643684,409.895063502574,263.369931151169,349.344615362065,369.905834283747,372.723432416556,255.30239126513,120.51021285417,358.288375442289,292.394915327095,204.136163030971,247.731189644873,146.789181678652,135.31262697227,135.617567857102,286.474164540535,214.19854793908,171.009747790799,97.2869290539091,161.374563185161,152.816048998713,64.315202296076,230.52026212631,259.382345400802,307.07618250806,198.944216360924,247.354656649691,122.787481039947,394.18740196681,270.906317098302,256.129370915541,401.537772007311,265.034648703187,205.040541643949,309.61770105543,219.085682669142,149.980320479169,172.438697015023,162.134678190727,355.515194638519,402.210870322972,115.646555087604,287.875969468333,123.050894675986,239.120131912961,575.476293103964,566.165145073487,559.386144826059,147.362384207372,127.075860193778,131.639742550883,217.338196180163,174.225748233145,223.304605869673,188.532069547866,235.065521872979,280.022516013207,347.421995133229,363.773846446285,216.219257647595,204.735411058817,171.548144524432,150.46910745316,162.815464467051,273.491839121275,307.824478783368,253.857728047857,186.517149091478,215.998034017782,231.662723418345,226.209042451289,227.277925961841,135.223547227065,142.873488892336,293.997886494859,286.261949732214,239.470989154235,191.241203808397,302.253575480223,268.70051444402,117.00749969068|short_description=p1@LAMP1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=3916 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6499 | |||
|TSSclassifier=S | |||
|UniProt=P11279 | |||
|association_with_transcript=0bp_to_ENST00000332556_5end | |||
|description=CAGE_peak_1_at_LAMP1_5end | |||
|id=chr13:113951532..113951594,+ | |||
|ontology_enrichment_celltype=CL:0000222!2.43e-13!119;CL:0000115!8.41e-13!35;CL:0002371!5.67e-12!591;CL:0002078!5.87e-12!44;CL:0000055!3.41e-11!180;CL:0000144!2.18e-10!625;CL:0000220!3.40e-10!246;CL:0000213!3.60e-10!57;CL:0000215!3.60e-10!57;CL:0002321!7.90e-10!248;CL:0000057!9.22e-10!75;CL:0002139!5.28e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0000115;1.84e-11;36!CL:0002078;4.18e-09;45!CL:0002139;5.35e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.94e-14,121;CL:0000115,3.50e-13,36;CL:0002078,2.50e-12,45;CL:0000213,1.65e-10,58;CL:0000215,1.65e-10,58;CL:0002321,2.45e-10,250;CL:0000057,3.87e-10,76;CL:0002139,5.28e-08,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!6.84e-17!659;UBERON:0000467!1.93e-16!625;UBERON:0000480!2.64e-16!626;UBERON:0003914!7.51e-14!118;UBERON:0002049!9.19e-13!79;UBERON:0007798!9.19e-13!79;UBERON:0000055!7.44e-12!69;UBERON:0004872!2.15e-11!84;UBERON:0000926!2.23e-11!448;UBERON:0004120!2.23e-11!448;UBERON:0006603!2.23e-11!448;UBERON:0000923!3.38e-10!604;UBERON:0005291!3.38e-10!604;UBERON:0006598!3.38e-10!604;UBERON:0002532!3.38e-10!604;UBERON:0002050!4.46e-10!605;UBERON:0005423!4.46e-10!605;UBERON:0000477!5.34e-10!286;UBERON:0004111!1.08e-09!241;UBERON:0003081!2.16e-09!216;UBERON:0000922!2.71e-09!612;UBERON:0004535!3.02e-09!110;UBERON:0001009!3.84e-09!113;UBERON:0001981!5.13e-09!60;UBERON:0007500!5.13e-09!60;UBERON:0004537!5.13e-09!60;UBERON:0006965!5.13e-09!60;UBERON:0000062!1.07e-08!511;UBERON:0001637!1.99e-07!42;UBERON:0003509!1.99e-07!42;UBERON:0004572!1.99e-07!42;UBERON:0005256!3.32e-07!143;UBERON:0000353!4.36e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0000055;7.62e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,1.78e-13,117;UBERON:0002049,2.36e-12,78;UBERON:0007798,2.36e-12,78;UBERON:0000055,1.92e-11,68;UBERON:0000926,2.40e-11,315;UBERON:0004120,2.40e-11,315;UBERON:0006603,2.40e-11,315;UBERON:0004872,5.22e-11,83;UBERON:0004111,2.36e-09,240;UBERON:0004535,6.39e-09,109;UBERON:0001009,8.03e-09,112;UBERON:0007500,1.24e-08,59;UBERON:0001981,1.24e-08,59;UBERON:0004537,1.24e-08,59;UBERON:0006965,1.24e-08,59;UBERON:0005423,2.89e-08,581;UBERON:0003081,3.31e-08,203;UBERON:0000923,3.99e-08,560;UBERON:0010316,3.99e-08,560;UBERON:0005291,3.99e-08,560;UBERON:0006598,3.99e-08,560;UBERON:0010317,3.99e-08,560;UBERON:0002532,3.99e-08,560;UBERON:0002050,5.60e-08,564;UBERON:0000922,5.78e-08,592;UBERON:0001637,1.99e-07,42;UBERON:0003509,1.99e-07,42;UBERON:0004572,1.99e-07,42;UBERON:0000119,5.21e-07,309;UBERON:0000483,7.35e-07,306 | |||
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| |||
|short_description=p1@LAMP1 | |||
}} |
Revision as of 01:36, 11 September 2013
Short description: | p1@LAMP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LAMP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000332556_5end |
EntrezGene: | LAMP1 |
HGNC: | 6499 |
UniProt: | P11279 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.94e-14 | 121 |
endothelial cell | 3.50e-13 | 36 |
meso-epithelial cell | 2.50e-12 | 45 |
lining cell | 1.65e-10 | 58 |
barrier cell | 1.65e-10 | 58 |
embryonic cell | 2.45e-10 | 250 |
fibroblast | 3.87e-10 | 76 |
endothelial cell of vascular tree | 5.28e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 1.78e-13 | 117 |
vasculature | 2.36e-12 | 78 |
vascular system | 2.36e-12 | 78 |
vessel | 1.92e-11 | 68 |
mesoderm | 2.40e-11 | 315 |
mesoderm-derived structure | 2.40e-11 | 315 |
presumptive mesoderm | 2.40e-11 | 315 |
splanchnic layer of lateral plate mesoderm | 5.22e-11 | 83 |
anatomical conduit | 2.36e-09 | 240 |
cardiovascular system | 6.39e-09 | 109 |
circulatory system | 8.03e-09 | 112 |
epithelial tube open at both ends | 1.24e-08 | 59 |
blood vessel | 1.24e-08 | 59 |
blood vasculature | 1.24e-08 | 59 |
vascular cord | 1.24e-08 | 59 |
developing anatomical structure | 2.89e-08 | 581 |
lateral plate mesoderm | 3.31e-08 | 203 |
germ layer | 3.99e-08 | 560 |
germ layer / neural crest | 3.99e-08 | 560 |
embryonic tissue | 3.99e-08 | 560 |
presumptive structure | 3.99e-08 | 560 |
germ layer / neural crest derived structure | 3.99e-08 | 560 |
epiblast (generic) | 3.99e-08 | 560 |
embryonic structure | 5.60e-08 | 564 |
embryo | 5.78e-08 | 592 |
artery | 1.99e-07 | 42 |
arterial blood vessel | 1.99e-07 | 42 |
arterial system | 1.99e-07 | 42 |
cell layer | 5.21e-07 | 309 |
epithelium | 7.35e-07 | 306 |
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