FFCP PHASE1:Hg19::chr16:81668601..81668624,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C14|description=CAGE_peak_at_chr16:81668601..81668624,+|id=chr16:81668601..81668624,+|ontology_enrichment_celltype=CL:0000763!1.72e-21!112;CL:0000049!1.72e-21!112;CL:0000037!7.87e-16!172;CL:0000566!7.87e-16!172;CL:0002032!7.50e-15!165;CL:0000837!7.50e-15!165;CL:0000988!7.38e-14!182;CL:0000094!2.38e-08!8;CL:0000766!3.03e-08!76;CL:0000738!5.03e-08!140;CL:0000453!5.65e-08!5;CL:0000990!7.33e-07!8|ontology_enrichment_celltype_v019=CL:0000094;2.34e-19;8!CL:0000453;8.89e-18;5!CL:0000081;8.34e-14;11!CL:0000775;9.90e-11;3!CL:0000767;1.66e-10;3!CL:0000226;1.99e-10;3!CL:0000842;1.99e-10;3!CL:0000990;1.04e-09;8!CL:0001014;1.81e-08;2!CL:0001016;1.81e-08;2!CL:0000764;6.30e-08;2!CL:0000558;6.30e-08;2!CL:0000451;7.13e-08;10|ontology_enrichment_celltype_v019_2=CL:0000763,7.99e-22,108;CL:0000049,7.99e-22,108;CL:0000094,1.71e-19,8;CL:0000453,8.33e-18,5;CL:0000037,8.72e-17,168;CL:0000988,1.72e-15,177;CL:0002032,2.66e-14,161;CL:0000837,2.66e-14,161;CL:0000081,6.69e-14,11;CL:0000775,7.71e-11,3;CL:0000767,1.46e-10,3;CL:0000226,1.66e-10,3;CL:0000842,1.66e-10,3;CL:0000990,1.00e-09,8;CL:0001014,1.82e-08,2;CL:0001016,1.82e-08,2;CL:0000764,6.64e-08,2;CL:0000765,6.64e-08,2;CL:0000050,6.64e-08,2;CL:0000038,6.64e-08,2;CL:0000558,6.64e-08,2;CL:0000547,6.64e-08,2;CL:0000549,6.64e-08,2;CL:0000550,6.64e-08,2;CL:0000552,6.64e-08,2;CL:0000451,6.93e-08,10|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:8692!7.79e-09!31;DOID:1036!4.75e-08!8|ontology_enrichment_disease_v019=DOID:8692;6.19e-18;31!DOID:1036;6.32e-15;8!DOID:1240;8.79e-11;39!DOID:2531;5.01e-07;51!DOID:0060083;5.01e-07;51|ontology_enrichment_disease_v019_2=DOID:8692,2.69e-18,31;DOID:1036,5.75e-15,8;DOID:1240,7.42e-14,39;DOID:2531,7.80e-10,51;DOID:0060083,7.80e-10,51|ontology_enrichment_uberon=UBERON:0007023!3.84e-14!115;UBERON:0000178!9.17e-13!15;UBERON:0000179!9.17e-13!15;UBERON:0000463!9.17e-13!15;UBERON:0002390!6.83e-11!102;UBERON:0003061!6.83e-11!102;UBERON:0002193!2.26e-09!112|ontology_enrichment_uberon_v019=UBERON:0000178;5.35e-32;15!UBERON:0000179;5.35e-32;15!UBERON:0000463;5.35e-32;15!UBERON:0002390;1.43e-17;32!UBERON:0002193;2.57e-09;42|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.58e-32,15;UBERON:0000179,4.58e-32,15;UBERON:0000463,4.58e-32,15;UBERON:0002390,5.65e-08,98;UBERON:0003061,5.65e-08,98;UBERON:0002193,7.53e-07,108|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.93364276848904,2.30297638858328,1.39334510984468,0,0,0,0,0,0,0.553995408531877,0,0,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0.697287110717054,0.411167888021826,1.23882548358041,0.28769239232215,0.256160706529101,0,0,0.645484683583826,0,1.69418105588344,1.09162460023138,0.449446968890169,0,0.962787081228281,0.639337125799041,0,0.199463657621632,0,0,0,0.622822248995575,0.251248665256743,0,0,0,0.368277635987565,0,0.211255286311942,0,0,0.112328631146495,0,0,0,0,0,1.75996244461323,0.546138611262131,0,0,0.400395987036012,2.29900975981793,0.661044872784862,0,0.569212969109448,0,0,1.32171328579026,3.92355994087075,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0.26591592103773,0.238490624305342,0,0,0.596287222100115,0,0.347140501607594,0,0.419499436209906,0,0.208994966536811,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0.949265659568129,0.366403487860815,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0.134710672069688,0.163461903113459,0.605429710579726,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.232387885739037,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.60967095213783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.414656231081544,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0,0,1.49801404789436,2.99161459204025,11.603634376209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68798433959754,1.50999940573032,2.24127871387233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,5.26223703950243,3.13722541229881,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,41.6107039570379,25.2330278356984,23.9251818613148,13.579211201094,10.2840568271549,27.8843523812868,18.901100303334,28.5525063465937,0,0,0,0,0,0,0,0,1.1490322207942,6.56188106444037,0.324621940274555,0.842391534340376,0,0,0,1.35433422241283,0,0,0,0,0,0,0,0,3.06246791284767,4.92349595790849,9.19549306818343,0,18.328310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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C14 | |||
|description=CAGE_peak_at_chr16:81668601..81668624,+ | |||
|id=chr16:81668601..81668624,+ | |||
|ontology_enrichment_celltype=CL:0000763!1.72e-21!112;CL:0000049!1.72e-21!112;CL:0000037!7.87e-16!172;CL:0000566!7.87e-16!172;CL:0002032!7.50e-15!165;CL:0000837!7.50e-15!165;CL:0000988!7.38e-14!182;CL:0000094!2.38e-08!8;CL:0000766!3.03e-08!76;CL:0000738!5.03e-08!140;CL:0000453!5.65e-08!5;CL:0000990!7.33e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000094;2.34e-19;8!CL:0000453;8.89e-18;5!CL:0000081;8.34e-14;11!CL:0000775;9.90e-11;3!CL:0000767;1.66e-10;3!CL:0000226;1.99e-10;3!CL:0000842;1.99e-10;3!CL:0000990;1.04e-09;8!CL:0001014;1.81e-08;2!CL:0001016;1.81e-08;2!CL:0000764;6.30e-08;2!CL:0000558;6.30e-08;2!CL:0000451;7.13e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,7.99e-22,108;CL:0000049,7.99e-22,108;CL:0000094,1.71e-19,8;CL:0000453,8.33e-18,5;CL:0000037,8.72e-17,168;CL:0000988,1.72e-15,177;CL:0002032,2.66e-14,161;CL:0000837,2.66e-14,161;CL:0000081,6.69e-14,11;CL:0000775,7.71e-11,3;CL:0000767,1.46e-10,3;CL:0000226,1.66e-10,3;CL:0000842,1.66e-10,3;CL:0000990,1.00e-09,8;CL:0001014,1.82e-08,2;CL:0001016,1.82e-08,2;CL:0000764,6.64e-08,2;CL:0000765,6.64e-08,2;CL:0000050,6.64e-08,2;CL:0000038,6.64e-08,2;CL:0000558,6.64e-08,2;CL:0000547,6.64e-08,2;CL:0000549,6.64e-08,2;CL:0000550,6.64e-08,2;CL:0000552,6.64e-08,2;CL:0000451,6.93e-08,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!7.79e-09!31;DOID:1036!4.75e-08!8 | |||
|ontology_enrichment_disease_v019=DOID:8692;6.19e-18;31!DOID:1036;6.32e-15;8!DOID:1240;8.79e-11;39!DOID:2531;5.01e-07;51!DOID:0060083;5.01e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.69e-18,31;DOID:1036,5.75e-15,8;DOID:1240,7.42e-14,39;DOID:2531,7.80e-10,51;DOID:0060083,7.80e-10,51 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.84e-14!115;UBERON:0000178!9.17e-13!15;UBERON:0000179!9.17e-13!15;UBERON:0000463!9.17e-13!15;UBERON:0002390!6.83e-11!102;UBERON:0003061!6.83e-11!102;UBERON:0002193!2.26e-09!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.35e-32;15!UBERON:0000179;5.35e-32;15!UBERON:0000463;5.35e-32;15!UBERON:0002390;1.43e-17;32!UBERON:0002193;2.57e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.58e-32,15;UBERON:0000179,4.58e-32,15;UBERON:0000463,4.58e-32,15;UBERON:0002390,5.65e-08,98;UBERON:0003061,5.65e-08,98;UBERON:0002193,7.53e-07,108 | |||
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|short_description=p@chr16:81668601..81668624,+ | |||
}} |
Revision as of 11:44, 11 September 2013
Short description: | p@chr16:81668601..81668624, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:81668601..81668624, + |
Coexpression cluster: | C14_Whole_blood_Reticulocytes_liver_Neutrophils_Eosinophils_spleen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid cell | 7.99e-22 | 108 |
common myeloid progenitor | 7.99e-22 | 108 |
granulocyte | 1.71e-19 | 8 |
Langerhans cell | 8.33e-18 | 5 |
hematopoietic stem cell | 8.72e-17 | 168 |
hematopoietic cell | 1.72e-15 | 177 |
hematopoietic oligopotent progenitor cell | 2.66e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.66e-14 | 161 |
blood cell | 6.69e-14 | 11 |
neutrophil | 7.71e-11 | 3 |
basophil | 1.46e-10 | 3 |
single nucleate cell | 1.66e-10 | 3 |
mononuclear cell | 1.66e-10 | 3 |
conventional dendritic cell | 1.00e-09 | 8 |
CD1a-positive Langerhans cell | 1.82e-08 | 2 |
immature CD1a-positive Langerhans cell | 1.82e-08 | 2 |
erythroid lineage cell | 6.64e-08 | 2 |
erythroblast | 6.64e-08 | 2 |
megakaryocyte-erythroid progenitor cell | 6.64e-08 | 2 |
erythroid progenitor cell | 6.64e-08 | 2 |
reticulocyte | 6.64e-08 | 2 |
proerythroblast | 6.64e-08 | 2 |
basophilic erythroblast | 6.64e-08 | 2 |
polychromatophilic erythroblast | 6.64e-08 | 2 |
orthochromatic erythroblast | 6.64e-08 | 2 |
dendritic cell | 6.93e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
blood | 4.58e-32 | 15 |
haemolymphatic fluid | 4.58e-32 | 15 |
organism substance | 4.58e-32 | 15 |
hematopoietic system | 5.65e-08 | 98 |
blood island | 5.65e-08 | 98 |
hemolymphoid system | 7.53e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.69e-18 | 31 |
chronic leukemia | 5.75e-15 | 8 |
leukemia | 7.42e-14 | 39 |
hematologic cancer | 7.80e-10 | 51 |
immune system cancer | 7.80e-10 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.