FFCP PHASE1:Hg19::chr17:48277133..48277317,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1277|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2197|TSSclassifier=S|UniProt=|association_with_transcript=234bp_to_ENST00000507689_5end|coexpression_cluster_id=C59|description=CAGE_peak_4_at_COL1A1_5end|id=chr17:48277133..48277317,-|ontology_enrichment_celltype=CL:0000055!3.20e-34!180;CL:0000057!8.36e-21!75;CL:0000680!5.43e-15!57;CL:0000056!5.43e-15!57;CL:0000355!5.43e-15!57;CL:0000183!6.18e-15!59;CL:0000187!2.09e-14!54;CL:0000393!1.88e-12!60;CL:0000211!1.88e-12!60;CL:0000192!3.71e-11!42;CL:0000514!3.71e-11!42;CL:0000359!4.62e-08!32;CL:0002620!2.99e-07!23|ontology_enrichment_celltype_v019=CL:0000187;3.48e-09;55!CL:0000057;4.29e-09;73!CL:0000192;6.61e-09;43!CL:0000134;1.49e-08;55!CL:0002320;3.79e-08;188!CL:0000359;3.83e-08;32!CL:0000723;1.15e-07;61!CL:0002620;1.23e-07;23!CL:0000048;1.26e-07;58!CL:0000393;1.38e-07;61!CL:0000211;1.38e-07;61!CL:0002334;5.97e-07;12!CL:0002494;9.69e-07;16|ontology_enrichment_celltype_v019_2=CL:0000057,1.77e-22,76;CL:0000680,2.61e-16,58;CL:0000056,2.61e-16,58;CL:0000355,2.61e-16,58;CL:0000187,1.11e-15,55;CL:0000393,3.52e-13,61;CL:0000211,3.52e-13,61;CL:0000192,3.40e-12,43;CL:0000514,3.40e-12,43;CL:0000359,1.62e-08,32;CL:0000048,1.81e-08,427;CL:0000723,1.13e-07,433;CL:0002620,1.19e-07,23;CL:0000034,2.31e-07,441;CL:0002334,6.16e-07,12;CL:0002494,9.85e-07,16|ontology_enrichment_development_v019=CL:0000355;5.16e-09;58!CL:0000514;6.61e-09;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!1.46e-17!83;UBERON:0002329!1.46e-17!83;UBERON:0003077!1.46e-17!83;UBERON:0003059!1.46e-17!83;UBERON:0007282!1.46e-17!83;UBERON:0009618!1.46e-17!83;UBERON:0007285!1.46e-17!83;UBERON:0004290!5.16e-16!70;UBERON:0001134!2.30e-15!61;UBERON:0002036!2.30e-15!61;UBERON:0003082!2.30e-15!61;UBERON:0002385!4.20e-15!63;UBERON:0001015!4.20e-15!63;UBERON:0000383!4.20e-15!63;UBERON:0000486!1.62e-14!82;UBERON:0005256!1.75e-13!143;UBERON:0002100!1.74e-12!216;UBERON:0003104!7.68e-11!238;UBERON:0009142!7.68e-11!238;UBERON:0000475!6.36e-09!365;UBERON:0003102!2.87e-08!95;UBERON:0000481!3.64e-08!347|ontology_enrichment_uberon_v019=UBERON:0002384;1.32e-07;198|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.98e-17,78;UBERON:0002329,7.59e-17,71;UBERON:0003059,7.59e-17,71;UBERON:0007282,7.59e-17,71;UBERON:0004290,7.59e-17,71;UBERON:0009618,7.59e-17,71;UBERON:0007524,8.71e-17,73;UBERON:0003077,3.33e-16,72;UBERON:0007285,3.33e-16,72;UBERON:0001134,3.94e-16,62;UBERON:0002036,3.94e-16,62;UBERON:0003082,3.94e-16,62;UBERON:0002385,7.32e-16,64;UBERON:0001015,7.32e-16,64;UBERON:0000383,7.32e-16,64;UBERON:0000486,2.00e-14,83;UBERON:0005256,2.51e-14,122;UBERON:0003104,8.91e-14,160;UBERON:0009142,8.91e-14,160;UBERON:0002100,1.08e-09,199;UBERON:0000490,6.55e-07,148|phase1_expression=97.1979329097478,89.7081195103219,187.046494235354,86.0630365836922,163.587760560387,69.7870819280295,88.6549573589087,7.58063848112197,3.65659879479774,1.72013755551056,7.6758128476967,4.15038607047327,41.6751825600957,4.95065411840187,25.5175979310495,10.0848771967766,6.02694528023977,2.19093027116212,2.43966399395253,13.7895585046002,27.3360926267299,37.6145665773705,1.43117993565528,3.01123735160345,9.1646126904206,0.305653622991805,0.328402357799783,0.314843125254717,0.393364276848904,0.383829398097213,0.77408061658038,4.59710612239464,2.10844143144775,1.47901604066715,0,0,0,0,0,0.434021741431704,0,0,0,0,0,0,0.232429036905685,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0.199463657621632,0,0,0.56738522469114,0.622822248995575,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.26134266020393,7.04684627245127,10.3213771593812,2.64342657158052,1.12101712596307,0.263384084775077,3.540775862049,3.53709686474248,6.37364646898479,0,4.56291173287027,2.8406868344084,1.94826728407911,0.111410456885174,2.06224135232386,0.221533894583621,0,0,0.130059347559878,0,0,0,2.22429844743091,1.07016331235885,3.1360657141493,0,1.53288197440768,0,0.506039384039006,0,0,0,0,0,0,0,0,1.61285394579786,1.87208137048455,3.33096128930438,134.093776472679,19.4503249314054,12.786256184353,30.3608888003036,108.288988697352,31.2868480955379,112.135318534205,106.573036596277,4.63220604103932,24.390233720882,17.0399484244665,1.5062593682237,0.364295288292542,1.85392221392215,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0.71153252537342,1.00416183829401,0,0,0.24406205754817,0,0.81014194788176,0,0,0.112611480483322,0,0,0.183201743930407,5.27121669744253,0,2.18047026071267,310.607469809574,52.2984013174714,14.6974190702673,178.98605134726,50.7175786543651,33.6406560085384,52.3070079075554,71.0402539441421,20.5399283363846,20.2066008104532,12.0961808303959,41.0178628917764,62.8031757683199,4.21778577300834,1.24864030732128,1.71141546463335,5.38015249986484,3.75790395660048,7.28428249656592,5.19667984798319,6.32877930890169,4.66770405784718,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=234bp_to_ENST00000507689_5end | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_4_at_COL1A1_5end | |||
|id=chr17:48277133..48277317,- | |||
|ontology_enrichment_celltype=CL:0000055!3.20e-34!180;CL:0000057!8.36e-21!75;CL:0000680!5.43e-15!57;CL:0000056!5.43e-15!57;CL:0000355!5.43e-15!57;CL:0000183!6.18e-15!59;CL:0000187!2.09e-14!54;CL:0000393!1.88e-12!60;CL:0000211!1.88e-12!60;CL:0000192!3.71e-11!42;CL:0000514!3.71e-11!42;CL:0000359!4.62e-08!32;CL:0002620!2.99e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000187;3.48e-09;55!CL:0000057;4.29e-09;73!CL:0000192;6.61e-09;43!CL:0000134;1.49e-08;55!CL:0002320;3.79e-08;188!CL:0000359;3.83e-08;32!CL:0000723;1.15e-07;61!CL:0002620;1.23e-07;23!CL:0000048;1.26e-07;58!CL:0000393;1.38e-07;61!CL:0000211;1.38e-07;61!CL:0002334;5.97e-07;12!CL:0002494;9.69e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.77e-22,76;CL:0000680,2.61e-16,58;CL:0000056,2.61e-16,58;CL:0000355,2.61e-16,58;CL:0000187,1.11e-15,55;CL:0000393,3.52e-13,61;CL:0000211,3.52e-13,61;CL:0000192,3.40e-12,43;CL:0000514,3.40e-12,43;CL:0000359,1.62e-08,32;CL:0000048,1.81e-08,427;CL:0000723,1.13e-07,433;CL:0002620,1.19e-07,23;CL:0000034,2.31e-07,441;CL:0002334,6.16e-07,12;CL:0002494,9.85e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;5.16e-09;58!CL:0000514;6.61e-09;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.46e-17!83;UBERON:0002329!1.46e-17!83;UBERON:0003077!1.46e-17!83;UBERON:0003059!1.46e-17!83;UBERON:0007282!1.46e-17!83;UBERON:0009618!1.46e-17!83;UBERON:0007285!1.46e-17!83;UBERON:0004290!5.16e-16!70;UBERON:0001134!2.30e-15!61;UBERON:0002036!2.30e-15!61;UBERON:0003082!2.30e-15!61;UBERON:0002385!4.20e-15!63;UBERON:0001015!4.20e-15!63;UBERON:0000383!4.20e-15!63;UBERON:0000486!1.62e-14!82;UBERON:0005256!1.75e-13!143;UBERON:0002100!1.74e-12!216;UBERON:0003104!7.68e-11!238;UBERON:0009142!7.68e-11!238;UBERON:0000475!6.36e-09!365;UBERON:0003102!2.87e-08!95;UBERON:0000481!3.64e-08!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.32e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.98e-17,78;UBERON:0002329,7.59e-17,71;UBERON:0003059,7.59e-17,71;UBERON:0007282,7.59e-17,71;UBERON:0004290,7.59e-17,71;UBERON:0009618,7.59e-17,71;UBERON:0007524,8.71e-17,73;UBERON:0003077,3.33e-16,72;UBERON:0007285,3.33e-16,72;UBERON:0001134,3.94e-16,62;UBERON:0002036,3.94e-16,62;UBERON:0003082,3.94e-16,62;UBERON:0002385,7.32e-16,64;UBERON:0001015,7.32e-16,64;UBERON:0000383,7.32e-16,64;UBERON:0000486,2.00e-14,83;UBERON:0005256,2.51e-14,122;UBERON:0003104,8.91e-14,160;UBERON:0009142,8.91e-14,160;UBERON:0002100,1.08e-09,199;UBERON:0000490,6.55e-07,148 | |||
|phase1_expression=97.1979329097478,89.7081195103219,187.046494235354,86.0630365836922,163.587760560387,69.7870819280295,88.6549573589087,7.58063848112197,3.65659879479774,1.72013755551056,7.6758128476967,4.15038607047327,41.6751825600957,4.95065411840187,25.5175979310495,10.0848771967766,6.02694528023977,2.19093027116212,2.43966399395253,13.7895585046002,27.3360926267299,37.6145665773705,1.43117993565528,3.01123735160345,9.1646126904206,0.305653622991805,0.328402357799783,0.314843125254717,0.393364276848904,0.383829398097213,0.77408061658038,4.59710612239464,2.10844143144775,1.47901604066715,0,0,0,0,0,0.434021741431704,0,0,0,0,0,0,0.232429036905685,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0.645484683583826,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0.199463657621632,0,0,0.56738522469114,0.622822248995575,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.26134266020393,7.04684627245127,10.3213771593812,2.64342657158052,1.12101712596307,0.263384084775077,3.540775862049,3.53709686474248,6.37364646898479,0,4.56291173287027,2.8406868344084,1.94826728407911,0.111410456885174,2.06224135232386,0.221533894583621,0,0,0.130059347559878,0,0,0,2.22429844743091,1.07016331235885,3.1360657141493,0,1.53288197440768,0,0.506039384039006,0,0,0,0,0,0,0,0,1.61285394579786,1.87208137048455,3.33096128930438,134.093776472679,19.4503249314054,12.786256184353,30.3608888003036,108.288988697352,31.2868480955379,112.135318534205,106.573036596277,4.63220604103932,24.390233720882,17.0399484244665,1.5062593682237,0.364295288292542,1.85392221392215,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0.71153252537342,1.00416183829401,0,0,0.24406205754817,0,0.81014194788176,0,0,0.112611480483322,0,0,0.183201743930407,5.27121669744253,0,2.18047026071267,310.607469809574,52.2984013174714,14.6974190702673,178.98605134726,50.7175786543651,33.6406560085384,52.3070079075554,71.0402539441421,20.5399283363846,20.2066008104532,12.0961808303959,41.0178628917764,62.8031757683199,4.21778577300834,1.24864030732128,1.71141546463335,5.38015249986484,3.75790395660048,7.28428249656592,5.19667984798319,6.32877930890169,4.66770405784718,11.6758132728615,236.412568599129,240.837989117314,33.675970391707,84.0783225924999,3.70339450698946,9.50900751026928,6.09541054065202,60.1399340606748,55.4742910396226,210.032806351422,6.01190570748112,32.469524059684,65.5621183673002,59.1290004235178,52.215850718686,33.2859669440158,32.7203485857949,48.0181489335502,66.6666512353002,44.4312743535066,27.5152813926085,58.9119351310716,51.0801539547446,52.8964292849755,21.9639574136256,12.2083626463551,1.15956511897978,1.09098448236334,0.286804595389004,1.46368447355514,0.397589304964456,1.62671520017326,2.17688215532278,1.26160425437814,1.45990943630332,29.725411142665,21.8701918985581,9.66944449467364,7.42988684851167,4.33127689001751,3.07597680103594,1.68584690078102,1.44606617930089,3.19852520923942,3.4860711054785,2.60997681022206,4.98875840192608,3.33576490713088,3.8474715694639,0.738155454624648,37.8652789269304,52.6814734504192,126.427491791566,0,0,0,0,0.122988438543114,8.40682270462775,0.878002283269004,2.24803506515239,0.402115889646523,0.277765335475589,2.6064664424826,10.3993478527958,4.3299402607582,1.04337364477569,20.5465214912688,0,0,0,0,0.858486162094873,0,0,0,0.93733833986777,4.03157107677263,0.567100388969546,0.358234090811393,0.871901815541886,1.15014803749563,0,0,1.65862492432618,1.15295962733569,1.2624243342638,0.063497894292169,0,0,5.13217338068116,1.23392991243988,0,0,8.29770024155669,27.0295242676634,6.0137394373179,49.2525237037133,53.6484668777824,27.049688081792,45.4754179360129,45.7632722410011,8.23063597638855,25.5328437641901,18.9159747101431,29.1675107062621,162.243860012041,45.2782185229423,9.77208552881205,29.1421397968888,9.50342247520115,8.13886318060882,14.816068796205,7.09808237392605,0,0,0,46.2475971098754,147.023277867666,8.5582143024431,11.2929419200712,18.0819163844337,7.87868238255541,0,2.1673383622212,2.37190332345469,1.79680250791648,1.01637849688985,0,0,0.670065061337395,0.637938751653163,1.49801404789436,5.9832291840805,1.65766205374414,3.43536176813592,15.0051156317903,13.5632511849868,235.630986114404,151.48621148879,116.22667988001,71.6905459755405,132.717229979924,579.889135342761,27.9377292489763,24.5763471458112,73.1945599110562,11.9899387965954,44.8384650589676,75.4915532383883,1.24060815673732,0.862856803274467,1.38745825144478,7.88131685760275,54.923695038464,41.1250798928365,168.961417124587,58.4690118227518,237.999760079246,285.878441989469,135.09071375361,223.908658231902,75.6932138869454,8.17311377154074,36.4001536891911,9.36249578557424,8.30807086693794,16.5018737413142,0,3.00759705454927,0.368323955743585,36.3961800681803,24.7643988489135,52.9742636436074,0.451199612907412,0.462092022626489,1.56869953835371,0,1.16106791782163,2.27466768141793,0,5.18198198645135,12.3381802152231,7.04460737614017,24.5827989188878,0.254876273045038,0,1.34324852833307,0,0,0,2.95213181129735,1.30151357865721,1.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| |||
|short_description=p4@COL1A1 | |||
}} |
Revision as of 14:29, 11 September 2013
Short description: | p4@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 234bp_to_ENST00000507689_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.77e-22 | 76 |
muscle precursor cell | 2.61e-16 | 58 |
myoblast | 2.61e-16 | 58 |
multi-potent skeletal muscle stem cell | 2.61e-16 | 58 |
muscle cell | 1.11e-15 | 55 |
electrically responsive cell | 3.52e-13 | 61 |
electrically active cell | 3.52e-13 | 61 |
smooth muscle cell | 3.40e-12 | 43 |
smooth muscle myoblast | 3.40e-12 | 43 |
vascular associated smooth muscle cell | 1.62e-08 | 32 |
multi fate stem cell | 1.81e-08 | 427 |
somatic stem cell | 1.13e-07 | 433 |
skin fibroblast | 1.19e-07 | 23 |
stem cell | 2.31e-07 | 441 |
preadipocyte | 6.16e-07 | 12 |
cardiocyte | 9.85e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.98e-17 | 78 |
somite | 7.59e-17 | 71 |
presomitic mesoderm | 7.59e-17 | 71 |
presumptive segmental plate | 7.59e-17 | 71 |
dermomyotome | 7.59e-17 | 71 |
trunk paraxial mesoderm | 7.59e-17 | 71 |
dense mesenchyme tissue | 8.71e-17 | 73 |
paraxial mesoderm | 3.33e-16 | 72 |
presumptive paraxial mesoderm | 3.33e-16 | 72 |
skeletal muscle tissue | 3.94e-16 | 62 |
striated muscle tissue | 3.94e-16 | 62 |
myotome | 3.94e-16 | 62 |
muscle tissue | 7.32e-16 | 64 |
musculature | 7.32e-16 | 64 |
musculature of body | 7.32e-16 | 64 |
multilaminar epithelium | 2.00e-14 | 83 |
trunk mesenchyme | 2.51e-14 | 122 |
mesenchyme | 8.91e-14 | 160 |
entire embryonic mesenchyme | 8.91e-14 | 160 |
trunk | 1.08e-09 | 199 |
unilaminar epithelium | 6.55e-07 | 148 |
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