FFCP PHASE1:Mm9::chr11:102994647..102994673,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71059|HGNC=|UniProt=Q3TVI4,A2AB67|association_with_transcript=0bp_to_ENSMUST00000062530,ENSMUST00000124928,NM_001130515,NM_001130516,NM_027658,uc007ltp.2,uc007ltq.2,uc007ltr.2_5end|description=CAGE_peak_1_at_Hexim2_5end|id=chr11:102994647..102994673,+|ontology_enrichment_celltype=CL:0000540!6.74e-12!33;CL:0000047!6.74e-12!33;CL:0000031!6.74e-12!33;CL:0000404!6.74e-12!33;CL:0000393!6.67e-11!39;CL:0000211!6.67e-11!39;CL:0000221!7.19e-10!44;CL:0000133!7.19e-10!44;CL:0002319!1.10e-09!43;CL:0000055!1.96e-08!50;CL:0000117!3.24e-07!23;CL:0000337!3.24e-07!23|ontology_enrichment_celltype_v019_2=CL:0000540,2.35e-12,33;CL:0000047,2.35e-12,33;CL:0000031,2.35e-12,33;CL:0000404,2.35e-12,33;CL:0000393,5.24e-11,39;CL:0000211,5.24e-11,39;CL:0000221,5.71e-10,44;CL:0000133,5.71e-10,44;CL:0002319,8.79e-10,43;CL:0000117,1.54e-07,23;CL:0000337,1.54e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.18e-23!73;UBERON:0005743!2.18e-23!73;UBERON:0000073!1.60e-21!75;UBERON:0001016!1.60e-21!75;UBERON:0004121!3.64e-20!102;UBERON:0000924!3.64e-20!102;UBERON:0006601!3.64e-20!102;UBERON:0002346!2.39e-19!71;UBERON:0003075!2.39e-19!71;UBERON:0007284!2.39e-19!71;UBERON:0001049!6.29e-15!52;UBERON:0005068!6.29e-15!52;UBERON:0006241!6.29e-15!52;UBERON:0007135!6.29e-15!52;UBERON:0000033!7.09e-15!63;UBERON:0000955!1.16e-13!50;UBERON:0006238!1.16e-13!50;UBERON:0002616!2.80e-13!49;UBERON:0003056!1.49e-11!49;UBERON:0003080!6.85e-10!40;UBERON:0002020!2.25e-09!34;UBERON:0002780!2.55e-09!39;UBERON:0001890!2.55e-09!39;UBERON:0006240!2.55e-09!39;UBERON:0007811!2.14e-07!86;UBERON:0000153!2.55e-07!94;UBERON:0002791!8.64e-07!29;UBERON:0003528!8.64e-07!29;UBERON:0001893!8.64e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.09e-23,73;UBERON:0001016,7.06e-22,75;UBERON:0002346,8.51e-19,64;UBERON:0003075,8.51e-19,64;UBERON:0007284,8.51e-19,64;UBERON:0004121,1.25e-18,95;UBERON:0000924,1.25e-18,95;UBERON:0006601,1.25e-18,95;UBERON:0000073,1.33e-16,54;UBERON:0001049,2.70e-15,52;UBERON:0005068,2.70e-15,52;UBERON:0006241,2.70e-15,52;UBERON:0007135,2.70e-15,52;UBERON:0010371,3.55e-14,73;UBERON:0000955,3.04e-12,47;UBERON:0006238,3.04e-12,47;UBERON:0010314,4.88e-12,92;UBERON:0003056,5.79e-12,49;UBERON:0002616,7.26e-12,46;UBERON:0003080,2.91e-10,40;UBERON:0002020,9.65e-10,34;UBERON:0002780,1.13e-09,39;UBERON:0001890,1.13e-09,39;UBERON:0006240,1.13e-09,39;UBERON:0003528,4.46e-07,29;UBERON:0002791,4.46e-07,29;UBERON:0001893,4.46e-07,29|phase1_expression=1.92178616525753,0.348975407639361,0,1.20985684522732,0.500895729946347,0.503637815735669,0.467225281191051,0.387369970324729,0.140788722151667,1.63845168425395,0.171217968225505,0.239316476986009,0.171200729931206,0.262261207256992,3.66420737997229,3.03712901084739,2.79824751251259,0.788655413395594,0.137114433605739,0.84877930359606,3.31668831589172,7.34753038886551,9.40319240900167,0.95995453676044,0.45881856213434,1.14846392823004,0.430761996159075,0.430942465371778,0.570070258369122,0.504060259519861,0.443461021310609,10.1604907753541,9.84103660135312,0,1.1554064790051,0.997407872150954,0.408338712524738,0.837063261473815,0.7813353445238,0,0,0,0,3.65100772129174,3.4468156614635,2.56965453026354,0.782391344348039,2.61630187656536,2.63623419281366,3.69416808241138,0.979904951377538,1.43752564364972,0.671130424230945,0,1.68046899571232,0.771778308107841,0.85960031981627,1.54701627683233,4.45096213891115,5.28990979272033,3.1691570175309,1.0165335962074,1.77858959222228,0.899899717281399,0,0.7104801149461,2.09720077362883,6.91592949578798,1.24427534770173,2.29510095163874,3.15487442027073,7.9982275633065,9.27647871996777,1.83736198822431,1.0543001812006,0,9.91042928994498,5.49055553766307,9.5236050618871,3.56092976871523,5.03182039813253,3.12548022334056,7.2587579740359,9.56696437053856,5.34793867218835,7.07108605136802,9.8236459751381,6.33758115806022,0.075726193333184,0.604572480854284,2.02905142091174,0,0.679971333707751,2.15881276655127,0.649776417447669,0.896053774194671,1.68533304158102,4.77204903218562,2.85764605063156,2.12003744706204,2.81686839553361,7.69958864485907,5.09610479413291,0,0.216491041011214,0.506719730950197,0,1.02765491747154,0.517875767294343,3.11728492036132,1.90833859442749,3.34912026143355,4.38169444786511,3.3158980921577,1.88141931417128,1.75933227861546,1.97755974187499,2.02439099687876,4.42305275974937,1.94120219936891,1.54589062922275,4.363877278217,0,7.02673912827713,9.42510180660548,0,0,0,0.762421362438388,9.73639156131348,4.11750542536764,2.38743269014442,4.17178368461463,3.83573185995496,8.72709787150152,5.353961681236,1.52759045775474,2.36373244159177,0.505445516867349,2.94618598241064,2.21204753036596,1.60931473103431,2.16074555766419,2.10986744970001,3.12967896096108,4.74020765053944,5.24729657534481,7.50239775143145,1.94011193639558,1.13463648100692,2.11141348996739,1.53437012699302,3.61461423993277,2.78601733217733,2.26360350048738,1.39323986772945,0.702213187313235,1.28673953557358,0.568326998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| ||
|EntrezGene=71059 | |||
|HGNC= | |||
|UniProt=Q3TVI4,A2AB67 | |||
|association_with_transcript=0bp_to_ENSMUST00000062530,ENSMUST00000124928,NM_001130515,NM_001130516,NM_027658,uc007ltp.2,uc007ltq.2,uc007ltr.2_5end | |||
|description=CAGE_peak_1_at_Hexim2_5end | |||
|id=chr11:102994647..102994673,+ | |||
|ontology_enrichment_celltype=CL:0000540!6.74e-12!33;CL:0000047!6.74e-12!33;CL:0000031!6.74e-12!33;CL:0000404!6.74e-12!33;CL:0000393!6.67e-11!39;CL:0000211!6.67e-11!39;CL:0000221!7.19e-10!44;CL:0000133!7.19e-10!44;CL:0002319!1.10e-09!43;CL:0000055!1.96e-08!50;CL:0000117!3.24e-07!23;CL:0000337!3.24e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,2.35e-12,33;CL:0000047,2.35e-12,33;CL:0000031,2.35e-12,33;CL:0000404,2.35e-12,33;CL:0000393,5.24e-11,39;CL:0000211,5.24e-11,39;CL:0000221,5.71e-10,44;CL:0000133,5.71e-10,44;CL:0002319,8.79e-10,43;CL:0000117,1.54e-07,23;CL:0000337,1.54e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.18e-23!73;UBERON:0005743!2.18e-23!73;UBERON:0000073!1.60e-21!75;UBERON:0001016!1.60e-21!75;UBERON:0004121!3.64e-20!102;UBERON:0000924!3.64e-20!102;UBERON:0006601!3.64e-20!102;UBERON:0002346!2.39e-19!71;UBERON:0003075!2.39e-19!71;UBERON:0007284!2.39e-19!71;UBERON:0001049!6.29e-15!52;UBERON:0005068!6.29e-15!52;UBERON:0006241!6.29e-15!52;UBERON:0007135!6.29e-15!52;UBERON:0000033!7.09e-15!63;UBERON:0000955!1.16e-13!50;UBERON:0006238!1.16e-13!50;UBERON:0002616!2.80e-13!49;UBERON:0003056!1.49e-11!49;UBERON:0003080!6.85e-10!40;UBERON:0002020!2.25e-09!34;UBERON:0002780!2.55e-09!39;UBERON:0001890!2.55e-09!39;UBERON:0006240!2.55e-09!39;UBERON:0007811!2.14e-07!86;UBERON:0000153!2.55e-07!94;UBERON:0002791!8.64e-07!29;UBERON:0003528!8.64e-07!29;UBERON:0001893!8.64e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.09e-23,73;UBERON:0001016,7.06e-22,75;UBERON:0002346,8.51e-19,64;UBERON:0003075,8.51e-19,64;UBERON:0007284,8.51e-19,64;UBERON:0004121,1.25e-18,95;UBERON:0000924,1.25e-18,95;UBERON:0006601,1.25e-18,95;UBERON:0000073,1.33e-16,54;UBERON:0001049,2.70e-15,52;UBERON:0005068,2.70e-15,52;UBERON:0006241,2.70e-15,52;UBERON:0007135,2.70e-15,52;UBERON:0010371,3.55e-14,73;UBERON:0000955,3.04e-12,47;UBERON:0006238,3.04e-12,47;UBERON:0010314,4.88e-12,92;UBERON:0003056,5.79e-12,49;UBERON:0002616,7.26e-12,46;UBERON:0003080,2.91e-10,40;UBERON:0002020,9.65e-10,34;UBERON:0002780,1.13e-09,39;UBERON:0001890,1.13e-09,39;UBERON:0006240,1.13e-09,39;UBERON:0003528,4.46e-07,29;UBERON:0002791,4.46e-07,29;UBERON:0001893,4.46e-07,29 | |||
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| |||
|short_description=p1@Hexim2 | |||
}} |
Revision as of 18:23, 12 September 2013
Short description: | p1@Hexim2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Hexim2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000062530, ENSMUST00000124928, NM_001130515, NM_001130516, NM_027658, uc007ltp.2, uc007ltq.2, uc007ltr.2_5end |
EntrezGene: | Hexim2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 2.35e-12 | 33 |
neuronal stem cell | 2.35e-12 | 33 |
neuroblast | 2.35e-12 | 33 |
electrically signaling cell | 2.35e-12 | 33 |
electrically responsive cell | 5.24e-11 | 39 |
electrically active cell | 5.24e-11 | 39 |
ectodermal cell | 5.71e-10 | 44 |
neurectodermal cell | 5.71e-10 | 44 |
neural cell | 8.79e-10 | 43 |
CNS neuron (sensu Vertebrata) | 1.54e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.54e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.09e-23 | 73 |
nervous system | 7.06e-22 | 75 |
neurectoderm | 8.51e-19 | 64 |
neural plate | 8.51e-19 | 64 |
presumptive neural plate | 8.51e-19 | 64 |
ectoderm-derived structure | 1.25e-18 | 95 |
ectoderm | 1.25e-18 | 95 |
presumptive ectoderm | 1.25e-18 | 95 |
regional part of nervous system | 1.33e-16 | 54 |
neural tube | 2.70e-15 | 52 |
neural rod | 2.70e-15 | 52 |
future spinal cord | 2.70e-15 | 52 |
neural keel | 2.70e-15 | 52 |
ecto-epithelium | 3.55e-14 | 73 |
brain | 3.04e-12 | 47 |
future brain | 3.04e-12 | 47 |
structure with developmental contribution from neural crest | 4.88e-12 | 92 |
pre-chordal neural plate | 5.79e-12 | 49 |
regional part of brain | 7.26e-12 | 46 |
anterior neural tube | 2.91e-10 | 40 |
gray matter | 9.65e-10 | 34 |
regional part of forebrain | 1.13e-09 | 39 |
forebrain | 1.13e-09 | 39 |
future forebrain | 1.13e-09 | 39 |
brain grey matter | 4.46e-07 | 29 |
regional part of telencephalon | 4.46e-07 | 29 |
telencephalon | 4.46e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.