FFCP PHASE1:Mm9::chr11:105898274..105898286,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71833|HGNC=|UniProt=|association_with_transcript=60bp_to_ENSMUST00000106891_5end|description=CAGE_peak_3_at_Dcaf7_5end|id=chr11:105898274..105898286,+|ontology_enrichment_celltype=CL:0000540!1.14e-13!33;CL:0000047!1.14e-13!33;CL:0000031!1.14e-13!33;CL:0000404!1.14e-13!33;CL:0000393!4.75e-10!39;CL:0000211!4.75e-10!39;CL:0000117!1.51e-08!23;CL:0000337!1.51e-08!23;CL:0000221!1.89e-08!44;CL:0000133!1.89e-08!44;CL:0002319!5.43e-08!43|ontology_enrichment_celltype_v019_2=CL:0000540,1.30e-13,33;CL:0000047,1.30e-13,33;CL:0000031,1.30e-13,33;CL:0000404,1.30e-13,33;CL:0000393,6.88e-10,39;CL:0000211,6.88e-10,39;CL:0000117,1.82e-08,23;CL:0000337,1.82e-08,23;CL:0000221,2.77e-08,44;CL:0000133,2.77e-08,44;CL:0002319,7.91e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.35e-20!73;UBERON:0005743!4.35e-20!73;UBERON:0002346!3.17e-19!71;UBERON:0003075!3.17e-19!71;UBERON:0007284!3.17e-19!71;UBERON:0000073!1.57e-18!75;UBERON:0001016!1.57e-18!75;UBERON:0004121!1.71e-17!102;UBERON:0000924!1.71e-17!102;UBERON:0006601!1.71e-17!102;UBERON:0000033!1.35e-14!63;UBERON:0001049!2.92e-14!52;UBERON:0005068!2.92e-14!52;UBERON:0006241!2.92e-14!52;UBERON:0007135!2.92e-14!52;UBERON:0003056!4.63e-14!49;UBERON:0000955!2.02e-12!50;UBERON:0006238!2.02e-12!50;UBERON:0002616!3.48e-12!49;UBERON:0003080!5.83e-12!40;UBERON:0002780!1.21e-11!39;UBERON:0001890!1.21e-11!39;UBERON:0006240!1.21e-11!39;UBERON:0002020!3.24e-10!34;UBERON:0000153!2.05e-08!94;UBERON:0007811!1.14e-07!86;UBERON:0002791!2.94e-07!29;UBERON:0003528!2.94e-07!29;UBERON:0001893!2.94e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.86e-20,73;UBERON:0001016,2.20e-18,75;UBERON:0002346,3.68e-18,64;UBERON:0003075,3.68e-18,64;UBERON:0007284,3.68e-18,64;UBERON:0004121,2.82e-16,95;UBERON:0000924,2.82e-16,95;UBERON:0006601,2.82e-16,95;UBERON:0000073,2.50e-15,54;UBERON:0010371,1.38e-14,73;UBERON:0001049,3.12e-14,52;UBERON:0005068,3.12e-14,52;UBERON:0006241,3.12e-14,52;UBERON:0007135,3.12e-14,52;UBERON:0003056,4.99e-14,49;UBERON:0010314,3.16e-13,92;UBERON:0003080,6.51e-12,40;UBERON:0002780,1.36e-11,39;UBERON:0001890,1.36e-11,39;UBERON:0006240,1.36e-11,39;UBERON:0000955,2.49e-11,47;UBERON:0006238,2.49e-11,47;UBERON:0002616,4.25e-11,46;UBERON:0002020,3.70e-10,34;UBERON:0003528,3.41e-07,29;UBERON:0002791,3.41e-07,29;UBERON:0001893,3.41e-07,29|phase1_expression=9.44878197918284,1.04692622291808,3.18499467572675,0.30246421130683,2.50447864973174,0.839396359559449,1.63528848416868,0.516493293766305,4.08287294239834,6.08567768437183,0.513653904676515,0.797721589953364,1.19840510951844,0.262261207256992,1.99865857089398,1.82227740650843,2.09868563438444,2.05050407482854,2.33094537129756,0.42438965179803,2.12608225377674,3.77305614563364,5.48519557191764,2.71987118748791,1.14704640533585,2.8711598205751,1.29228598847722,0.861884930743556,0.950117097281869,0.252030129759931,0.886922042621219,8.89042942843484,5.53558308826113,0,1.1554064790051,0.997407872150954,0.816677425049476,0,1.5626706890476,2.09409497589519,0,0.683045484958446,0.971020706062307,1.6366586336825,2.12891555560981,2.56965453026354,2.34717403304412,1.52617609466313,3.07560655828261,1.74986909166855,0.979904951377538,0,2.51673909086605,2.90144856804538,5.71359458542189,0.771778308107841,0.85960031981627,1.54701627683233,12.7459370341547,13.2247744818008,10.1413024560989,1.35537812827653,0,0.449949858640699,0.988866362566974,1.4209602298922,0.898800331555214,2.30530983192933,3.62913643079672,2.56511282830212,3.15487442027073,28.2794474559766,17.8903518170807,3.1847607795888,2.58782771749238,0.919218786610021,6.60695285996332,5.74593021383345,5.22262213071228,12.0016521834476,12.0763689555181,9.89735404057844,5.862842979029,6.75315132038016,6.72312290217964,22.6864010814724,21.6404954814636,15.6575534493252,0.681535739998656,1.058001841495,2.31891590961342,0,0.679971333707751,2.15881276655127,0,0.896053774194671,0.842666520790511,0.852151612890289,0.779358013808606,0.70667914902068,8.87313544593087,2.56652954828636,0,0,1.08245520505607,0.253359865475099,0.505524445014783,0.45673551887624,2.58937883647172,2.67195850316685,4.8575891494518,6.08930956624282,3.22861696158482,4.22023393547343,5.87943535678524,2.63899841792318,3.70792451601561,0.289198713839823,2.65383165584962,2.26473589926373,1.32504911076236,2.42437626567611,0,1.46390398505774,3.56059401582874,0.510914110417183,4.55297473122497,6.59893004092748,5.33694953706872,5.54225365797844,3.66000482254901,5.52879149296603,4.86708096538374,6.13717097592793,4.57133698031032,6.32740925964255,2.24046600470696,1.24406970610093,1.76905930903572,1.68353484709179,6.50602214813519,4.59804208866946,4.32149111532838,6.17889753126432,5.64702942956021,7.04625461566674,5.528401749024,5.43277078551933,8.62271971731369,5.67318240503458,3.87092473160687,3.5071317188412,3.61461423993277,2.089512999133,2.46938563689532,5.9710280045548,2.80885274925294,4.63226232806487,3.6941254921427,3.52113813310353,6.80125573945179,3.6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| ||
|EntrezGene=71833 | |||
|HGNC= | |||
|UniProt= | |||
|association_with_transcript=60bp_to_ENSMUST00000106891_5end | |||
|description=CAGE_peak_3_at_Dcaf7_5end | |||
|id=chr11:105898274..105898286,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.14e-13!33;CL:0000047!1.14e-13!33;CL:0000031!1.14e-13!33;CL:0000404!1.14e-13!33;CL:0000393!4.75e-10!39;CL:0000211!4.75e-10!39;CL:0000117!1.51e-08!23;CL:0000337!1.51e-08!23;CL:0000221!1.89e-08!44;CL:0000133!1.89e-08!44;CL:0002319!5.43e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.30e-13,33;CL:0000047,1.30e-13,33;CL:0000031,1.30e-13,33;CL:0000404,1.30e-13,33;CL:0000393,6.88e-10,39;CL:0000211,6.88e-10,39;CL:0000117,1.82e-08,23;CL:0000337,1.82e-08,23;CL:0000221,2.77e-08,44;CL:0000133,2.77e-08,44;CL:0002319,7.91e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.35e-20!73;UBERON:0005743!4.35e-20!73;UBERON:0002346!3.17e-19!71;UBERON:0003075!3.17e-19!71;UBERON:0007284!3.17e-19!71;UBERON:0000073!1.57e-18!75;UBERON:0001016!1.57e-18!75;UBERON:0004121!1.71e-17!102;UBERON:0000924!1.71e-17!102;UBERON:0006601!1.71e-17!102;UBERON:0000033!1.35e-14!63;UBERON:0001049!2.92e-14!52;UBERON:0005068!2.92e-14!52;UBERON:0006241!2.92e-14!52;UBERON:0007135!2.92e-14!52;UBERON:0003056!4.63e-14!49;UBERON:0000955!2.02e-12!50;UBERON:0006238!2.02e-12!50;UBERON:0002616!3.48e-12!49;UBERON:0003080!5.83e-12!40;UBERON:0002780!1.21e-11!39;UBERON:0001890!1.21e-11!39;UBERON:0006240!1.21e-11!39;UBERON:0002020!3.24e-10!34;UBERON:0000153!2.05e-08!94;UBERON:0007811!1.14e-07!86;UBERON:0002791!2.94e-07!29;UBERON:0003528!2.94e-07!29;UBERON:0001893!2.94e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.86e-20,73;UBERON:0001016,2.20e-18,75;UBERON:0002346,3.68e-18,64;UBERON:0003075,3.68e-18,64;UBERON:0007284,3.68e-18,64;UBERON:0004121,2.82e-16,95;UBERON:0000924,2.82e-16,95;UBERON:0006601,2.82e-16,95;UBERON:0000073,2.50e-15,54;UBERON:0010371,1.38e-14,73;UBERON:0001049,3.12e-14,52;UBERON:0005068,3.12e-14,52;UBERON:0006241,3.12e-14,52;UBERON:0007135,3.12e-14,52;UBERON:0003056,4.99e-14,49;UBERON:0010314,3.16e-13,92;UBERON:0003080,6.51e-12,40;UBERON:0002780,1.36e-11,39;UBERON:0001890,1.36e-11,39;UBERON:0006240,1.36e-11,39;UBERON:0000955,2.49e-11,47;UBERON:0006238,2.49e-11,47;UBERON:0002616,4.25e-11,46;UBERON:0002020,3.70e-10,34;UBERON:0003528,3.41e-07,29;UBERON:0002791,3.41e-07,29;UBERON:0001893,3.41e-07,29 | |||
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| |||
|short_description=p3@Dcaf7 | |||
}} |
Revision as of 18:30, 12 September 2013
Short description: | p3@Dcaf7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dcaf7_5end |
Coexpression cluster: | NA |
Association with transcript: | 60bp_to_ENSMUST00000106891_5end |
EntrezGene: | Dcaf7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.30e-13 | 33 |
neuronal stem cell | 1.30e-13 | 33 |
neuroblast | 1.30e-13 | 33 |
electrically signaling cell | 1.30e-13 | 33 |
electrically responsive cell | 6.88e-10 | 39 |
electrically active cell | 6.88e-10 | 39 |
CNS neuron (sensu Vertebrata) | 1.82e-08 | 23 |
neuroblast (sensu Vertebrata) | 1.82e-08 | 23 |
ectodermal cell | 2.77e-08 | 44 |
neurectodermal cell | 2.77e-08 | 44 |
neural cell | 7.91e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.86e-20 | 73 |
nervous system | 2.20e-18 | 75 |
neurectoderm | 3.68e-18 | 64 |
neural plate | 3.68e-18 | 64 |
presumptive neural plate | 3.68e-18 | 64 |
ectoderm-derived structure | 2.82e-16 | 95 |
ectoderm | 2.82e-16 | 95 |
presumptive ectoderm | 2.82e-16 | 95 |
regional part of nervous system | 2.50e-15 | 54 |
ecto-epithelium | 1.38e-14 | 73 |
neural tube | 3.12e-14 | 52 |
neural rod | 3.12e-14 | 52 |
future spinal cord | 3.12e-14 | 52 |
neural keel | 3.12e-14 | 52 |
pre-chordal neural plate | 4.99e-14 | 49 |
structure with developmental contribution from neural crest | 3.16e-13 | 92 |
anterior neural tube | 6.51e-12 | 40 |
regional part of forebrain | 1.36e-11 | 39 |
forebrain | 1.36e-11 | 39 |
future forebrain | 1.36e-11 | 39 |
brain | 2.49e-11 | 47 |
future brain | 2.49e-11 | 47 |
regional part of brain | 4.25e-11 | 46 |
gray matter | 3.70e-10 | 34 |
brain grey matter | 3.41e-07 | 29 |
regional part of telencephalon | 3.41e-07 | 29 |
telencephalon | 3.41e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.