FFCP PHASE1:Mm9::chr13:36818295..36818314,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=211|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr13:36818295..36818314,-|id=chr13:36818295..36818314,-|ontology_enrichment_celltype=CL:0000117!5.35e-13!23;CL:0000337!5.35e-13!23;CL:0000540!2.62e-10!33;CL:0000047!2.62e-10!33;CL:0000031!2.62e-10!33;CL:0000404!2.62e-10!33;CL:0002319!3.95e-09!43;CL:0000221!1.07e-08!44;CL:0000133!1.07e-08!44;CL:0000393!2.16e-07!39;CL:0000211!2.16e-07!39;CL:0000055!2.73e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.27e-14,23;CL:0000337,5.27e-14,23;CL:0000540,6.46e-09,33;CL:0000047,6.46e-09,33;CL:0000031,6.46e-09,33;CL:0000404,6.46e-09,33;CL:0000182,1.99e-08,5;CL:0000120,1.80e-07,3;CL:0000393,3.93e-07,39;CL:0000211,3.93e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!2.35e-18!34;UBERON:0000073!2.17e-15!75;UBERON:0001016!2.17e-15!75;UBERON:0001017!4.85e-15!73;UBERON:0005743!4.85e-15!73;UBERON:0001049!6.02e-15!52;UBERON:0005068!6.02e-15!52;UBERON:0006241!6.02e-15!52;UBERON:0007135!6.02e-15!52;UBERON:0002791!8.50e-15!29;UBERON:0003528!8.50e-15!29;UBERON:0001893!8.50e-15!29;UBERON:0000955!1.42e-13!50;UBERON:0006238!1.42e-13!50;UBERON:0000025!3.57e-13!114;UBERON:0002616!4.67e-13!49;UBERON:0004111!1.35e-11!122;UBERON:0000956!1.51e-11!21;UBERON:0001869!1.51e-11!21;UBERON:0000203!1.51e-11!21;UBERON:0003080!1.53e-11!40;UBERON:0002780!4.10e-11!39;UBERON:0001890!4.10e-11!39;UBERON:0006240!4.10e-11!39;UBERON:0000033!1.90e-10!63;UBERON:0002107!2.70e-10!22;UBERON:0007499!2.70e-10!22;UBERON:0006925!2.70e-10!22;UBERON:0009497!2.70e-10!22;UBERON:0000015!2.70e-10!22;UBERON:0002423!2.70e-10!22;UBERON:0006235!2.70e-10!22;UBERON:0008835!2.70e-10!22;UBERON:0003894!2.70e-10!22;UBERON:0004161!2.70e-10!22;UBERON:0008836!2.70e-10!22;UBERON:0002346!4.34e-10!71;UBERON:0003075!4.34e-10!71;UBERON:0007284!4.34e-10!71;UBERON:0003056!5.41e-10!49;UBERON:0002619!1.07e-09!17;UBERON:0009854!1.53e-09!23;UBERON:0009856!1.53e-09!23;UBERON:0004121!1.10e-08!102;UBERON:0000924!1.10e-08!102;UBERON:0006601!1.10e-08!102;UBERON:0002021!1.78e-08!10;UBERON:0000411!1.78e-08!10;UBERON:0001950!1.78e-08!10;UBERON:0002365!3.10e-08!25;UBERON:0002330!3.10e-08!25|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.03e-16,22;UBERON:0007499,1.03e-16,22;UBERON:0006925,1.03e-16,22;UBERON:0009497,1.03e-16,22;UBERON:0000015,1.03e-16,22;UBERON:0002423,1.03e-16,22;UBERON:0006235,1.03e-16,22;UBERON:0008835,1.03e-16,22;UBERON:0003894,1.03e-16,22;UBERON:0004161,1.03e-16,22;UBERON:0008836,1.03e-16,22;UBERON:0009854,7.51e-16,23;UBERON:0009856,7.51e-16,23;UBERON:0002365,2.45e-14,25;UBERON:0002330,2.45e-14,25;UBERON:0002020,2.73e-12,34;UBERON:0000025,1.50e-10,114;UBERON:0004111,1.95e-09,122;UBERON:0003528,2.31e-09,29;UBERON:0002791,2.31e-09,29;UBERON:0001893,2.31e-09,29;UBERON:0000073,1.27e-08,54;UBERON:0002021,2.63e-08,10;UBERON:0000411,2.63e-08,10;UBERON:0001950,2.63e-08,10;UBERON:0001017,3.67e-08,73;UBERON:0011216,5.84e-08,194;UBERON:0001016,7.95e-08,75;UBERON:0001049,6.89e-07,52;UBERON:0005068,6.89e-07,52;UBERON:0006241,6.89e-07,52;UBERON:0007135,6.89e-07,52|phase1_expression=0,0,0,0,0,0,0,0.387369970324729,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.219686182734472,0.388859798148567,0,0,0,0,0,0,0,0,1.21389876515759,2.64495489636016,2.53532561402472,0,0,0.449949858640699,0,0,0,0,0.207379224616955,0.675029691658453,0.420649922702764,1.14260393761521,0.883474163806454,0,1.43768206527355,0.919218786610021,0,1.91531007127782,1.0752457327937,0.263772575460388,4.48289453651807,1.04182674111352,3.07101298901519,2.8138130501584,0.916789486660861,5.00868595305235,1.42371680799103,0.745597783301202,0.075726193333184,0.151143120213571,0,0.860423876981386,5.439770669662,15.6513925574967,2.59910566979068,2.24013443548668,0,0,0,0,0,0,0,0,0,0,0,1.1418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0.292780797011547,0,0,0,0,0,0.449371918214468,0,0.125654352112864,1.56441888173049,1.79000820131231,0.41557608911912,0.811206315338788,0.101839363850316,0.124406970610093,0,0,0,0.229902104433473,0.180062129805349,0.150704817835715,0,0,0,0.258703370739016,0,0,0.175951124163949,0,0.278047249225598,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0.219550115291051,0,0.630869845692382,0.102904612379284,0,0,0,0,0,0.403367049246685,1.11189021922435,0.570676878337677,0,0.494096864172033,2.01068167040216,0.198956472041151,0.38992817423824,0,0,0,0,0,0,0,0,0,0,0,0,0,4.15033677922008,0,0,0,0.405720242777006,0.241177159752417,0.763877555344259,1.43848068725405,0.162135226775035,1.64736847912849,10.0637744569148,1.48856379067401,4.36852742360385,5.55673531483646,5.38192240565737,8.20153986317724,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0.642202359951168,0.703270119553219,1.96721934452011,0,0.315508219416257,0,0,0.716906393857656,0,0.283076530788832,0,0.584511715822624,0,0.642642632843614,0.141940085208269,0.178065603667255,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0,0.655087691238533,0,0.247960367176008,0.26175594198403,0,0,0,0,0.330916980914195,0,0.387479470433193,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579568782096571,0.375364950902364,0,0,0,0.564751842617067,2.76195141904306,0.572895513439397,2.57779773515531,0.685082519770642,3.7769694869485,4.05013500139084,2.2516060161211,0.906284817968409,2.5888015587591,0.103787347584177,0,0,0,0,0.183843508450014,0,0.412070114477788,0,0.252697211763798,0,0.188626341386076,0.280924522409647,0.192075457214608,0.402048282689293,0,0.347652977834566,0,0.412085900803307,0,0.342869252385415,0.354951612318675,1.43061713968393,0,0.188218760830661,0.507687647350059,0.548783918618318,0.263069711437843,0.135804113845862,0,0,0,0.409231043169689,0.464810523557898,0.578719832943424,0,0,0.214871054048298,0,0,0|short_description=p@chr13:36818295..36818314,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=211 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr13:36818295..36818314,- | |||
|id=chr13:36818295..36818314,- | |||
|ontology_enrichment_celltype=CL:0000117!5.35e-13!23;CL:0000337!5.35e-13!23;CL:0000540!2.62e-10!33;CL:0000047!2.62e-10!33;CL:0000031!2.62e-10!33;CL:0000404!2.62e-10!33;CL:0002319!3.95e-09!43;CL:0000221!1.07e-08!44;CL:0000133!1.07e-08!44;CL:0000393!2.16e-07!39;CL:0000211!2.16e-07!39;CL:0000055!2.73e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.27e-14,23;CL:0000337,5.27e-14,23;CL:0000540,6.46e-09,33;CL:0000047,6.46e-09,33;CL:0000031,6.46e-09,33;CL:0000404,6.46e-09,33;CL:0000182,1.99e-08,5;CL:0000120,1.80e-07,3;CL:0000393,3.93e-07,39;CL:0000211,3.93e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!2.35e-18!34;UBERON:0000073!2.17e-15!75;UBERON:0001016!2.17e-15!75;UBERON:0001017!4.85e-15!73;UBERON:0005743!4.85e-15!73;UBERON:0001049!6.02e-15!52;UBERON:0005068!6.02e-15!52;UBERON:0006241!6.02e-15!52;UBERON:0007135!6.02e-15!52;UBERON:0002791!8.50e-15!29;UBERON:0003528!8.50e-15!29;UBERON:0001893!8.50e-15!29;UBERON:0000955!1.42e-13!50;UBERON:0006238!1.42e-13!50;UBERON:0000025!3.57e-13!114;UBERON:0002616!4.67e-13!49;UBERON:0004111!1.35e-11!122;UBERON:0000956!1.51e-11!21;UBERON:0001869!1.51e-11!21;UBERON:0000203!1.51e-11!21;UBERON:0003080!1.53e-11!40;UBERON:0002780!4.10e-11!39;UBERON:0001890!4.10e-11!39;UBERON:0006240!4.10e-11!39;UBERON:0000033!1.90e-10!63;UBERON:0002107!2.70e-10!22;UBERON:0007499!2.70e-10!22;UBERON:0006925!2.70e-10!22;UBERON:0009497!2.70e-10!22;UBERON:0000015!2.70e-10!22;UBERON:0002423!2.70e-10!22;UBERON:0006235!2.70e-10!22;UBERON:0008835!2.70e-10!22;UBERON:0003894!2.70e-10!22;UBERON:0004161!2.70e-10!22;UBERON:0008836!2.70e-10!22;UBERON:0002346!4.34e-10!71;UBERON:0003075!4.34e-10!71;UBERON:0007284!4.34e-10!71;UBERON:0003056!5.41e-10!49;UBERON:0002619!1.07e-09!17;UBERON:0009854!1.53e-09!23;UBERON:0009856!1.53e-09!23;UBERON:0004121!1.10e-08!102;UBERON:0000924!1.10e-08!102;UBERON:0006601!1.10e-08!102;UBERON:0002021!1.78e-08!10;UBERON:0000411!1.78e-08!10;UBERON:0001950!1.78e-08!10;UBERON:0002365!3.10e-08!25;UBERON:0002330!3.10e-08!25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.03e-16,22;UBERON:0007499,1.03e-16,22;UBERON:0006925,1.03e-16,22;UBERON:0009497,1.03e-16,22;UBERON:0000015,1.03e-16,22;UBERON:0002423,1.03e-16,22;UBERON:0006235,1.03e-16,22;UBERON:0008835,1.03e-16,22;UBERON:0003894,1.03e-16,22;UBERON:0004161,1.03e-16,22;UBERON:0008836,1.03e-16,22;UBERON:0009854,7.51e-16,23;UBERON:0009856,7.51e-16,23;UBERON:0002365,2.45e-14,25;UBERON:0002330,2.45e-14,25;UBERON:0002020,2.73e-12,34;UBERON:0000025,1.50e-10,114;UBERON:0004111,1.95e-09,122;UBERON:0003528,2.31e-09,29;UBERON:0002791,2.31e-09,29;UBERON:0001893,2.31e-09,29;UBERON:0000073,1.27e-08,54;UBERON:0002021,2.63e-08,10;UBERON:0000411,2.63e-08,10;UBERON:0001950,2.63e-08,10;UBERON:0001017,3.67e-08,73;UBERON:0011216,5.84e-08,194;UBERON:0001016,7.95e-08,75;UBERON:0001049,6.89e-07,52;UBERON:0005068,6.89e-07,52;UBERON:0006241,6.89e-07,52;UBERON:0007135,6.89e-07,52 | |||
|phase1_expression=0,0,0,0,0,0,0,0.387369970324729,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.498703936075477,0,0,0,0,0,0,0,0,0,0,0,0.65407546914134,0.219686182734472,0.388859798148567,0,0,0,0,0,0,0,0,1.21389876515759,2.64495489636016,2.53532561402472,0,0,0.449949858640699,0,0,0,0,0.207379224616955,0.675029691658453,0.420649922702764,1.14260393761521,0.883474163806454,0,1.43768206527355,0.919218786610021,0,1.91531007127782,1.0752457327937,0.263772575460388,4.48289453651807,1.04182674111352,3.07101298901519,2.8138130501584,0.916789486660861,5.00868595305235,1.42371680799103,0.745597783301202,0.075726193333184,0.151143120213571,0,0.860423876981386,5.439770669662,15.6513925574967,2.59910566979068,2.24013443548668,0,0,0,0,0,0,0,0,0,0,0,1.1418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0.292780797011547,0,0,0,0,0,0.449371918214468,0,0.125654352112864,1.56441888173049,1.79000820131231,0.41557608911912,0.811206315338788,0.101839363850316,0.124406970610093,0,0,0,0.229902104433473,0.180062129805349,0.150704817835715,0,0,0,0.258703370739016,0,0,0.175951124163949,0,0.278047249225598,0,0,0,0,0,0,0,0.234526059981096,0,0,0,0,0.232533944750408,0,0,0,0,0,0,0.219550115291051,0,0.630869845692382,0.102904612379284,0,0,0,0,0,0.403367049246685,1.11189021922435,0.570676878337677,0,0.494096864172033,2.01068167040216,0.198956472041151,0.38992817423824,0,0,0,0,0,0,0,0,0,0,0,0,0,4.15033677922008,0,0,0,0.405720242777006,0.241177159752417,0.763877555344259,1.43848068725405,0.162135226775035,1.64736847912849,10.0637744569148,1.48856379067401,4.36852742360385,5.55673531483646,5.38192240565737,8.20153986317724,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0,0,0,0,0,0.642202359951168,0.703270119553219,1.96721934452011,0,0.315508219416257,0,0,0.716906393857656,0,0.283076530788832,0,0.584511715822624,0,0.642642632843614,0.141940085208269,0.178065603667255,0,0.164970122972535,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0,0,0.655087691238533,0,0.247960367176008,0.26175594198403,0,0,0,0,0.330916980914195,0,0.387479470433193,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579568782096571,0.375364950902364,0,0,0,0.564751842617067,2.76195141904306,0.572895513439397,2.57779773515531,0.685082519770642,3.7769694869485,4.05013500139084,2.2516060161211,0.906284817968409,2.5888015587591,0.103787347584177,0,0,0,0,0.183843508450014,0,0.412070114477788,0,0.252697211763798,0,0.188626341386076,0.280924522409647,0.192075457214608,0.402048282689293,0,0.347652977834566,0,0.412085900803307,0,0.342869252385415,0.354951612318675,1.43061713968393,0,0.188218760830661,0.507687647350059,0.548783918618318,0.263069711437843,0.135804113845862,0,0,0,0.409231043169689,0.464810523557898,0.578719832943424,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr13:36818295..36818314,- | |||
}} |
Revision as of 00:26, 13 September 2013
Short description: | p@chr13:36818295..36818314, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:36818295..36818314, - |
Coexpression cluster: | MCL_coexpression_mm9:211 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.27e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.27e-14 | 23 |
neuron | 6.46e-09 | 33 |
neuronal stem cell | 6.46e-09 | 33 |
neuroblast | 6.46e-09 | 33 |
electrically signaling cell | 6.46e-09 | 33 |
hepatocyte | 1.99e-08 | 5 |
granule cell | 1.80e-07 | 3 |
electrically responsive cell | 3.93e-07 | 39 |
electrically active cell | 3.93e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
liver | 1.03e-16 | 22 |
epithelial sac | 1.03e-16 | 22 |
digestive gland | 1.03e-16 | 22 |
epithelium of foregut-midgut junction | 1.03e-16 | 22 |
anatomical boundary | 1.03e-16 | 22 |
hepatobiliary system | 1.03e-16 | 22 |
foregut-midgut junction | 1.03e-16 | 22 |
hepatic diverticulum | 1.03e-16 | 22 |
liver primordium | 1.03e-16 | 22 |
septum transversum | 1.03e-16 | 22 |
liver bud | 1.03e-16 | 22 |
digestive tract diverticulum | 7.51e-16 | 23 |
sac | 7.51e-16 | 23 |
exocrine gland | 2.45e-14 | 25 |
exocrine system | 2.45e-14 | 25 |
gray matter | 2.73e-12 | 34 |
tube | 1.50e-10 | 114 |
anatomical conduit | 1.95e-09 | 122 |
brain grey matter | 2.31e-09 | 29 |
regional part of telencephalon | 2.31e-09 | 29 |
telencephalon | 2.31e-09 | 29 |
regional part of nervous system | 1.27e-08 | 54 |
occipital lobe | 2.63e-08 | 10 |
visual cortex | 2.63e-08 | 10 |
neocortex | 2.63e-08 | 10 |
central nervous system | 3.67e-08 | 73 |
organ system subdivision | 5.84e-08 | 194 |
nervous system | 7.95e-08 | 75 |
neural tube | 6.89e-07 | 52 |
neural rod | 6.89e-07 | 52 |
future spinal cord | 6.89e-07 | 52 |
neural keel | 6.89e-07 | 52 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.