FFCP PHASE1:Hg19::chr3:60066621..60066648,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2272|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3701|TSSclassifier=W|UniProt=|association_with_transcript=-55bp_to_ENST00000466788_5end|coexpression_cluster_id=C18|description=CAGE_peak_3_at_FHIT_5end|id=chr3:60066621..60066648,-|ontology_enrichment_celltype=CL:0000791!1.06e-33!18;CL:0000789!1.06e-33!18;CL:0002420!1.06e-33!18;CL:0002419!1.06e-33!18;CL:0000790!1.06e-33!18;CL:0000838!1.18e-31!52;CL:0000084!5.21e-31!25;CL:0000827!5.21e-31!25;CL:0000542!7.13e-31!53;CL:0000051!7.13e-31!53;CL:0000625!2.22e-23!11;CL:0000738!2.91e-23!140;CL:0002087!4.58e-23!119;CL:0002031!8.38e-18!124;CL:0000037!2.26e-17!172;CL:0000566!2.26e-17!172;CL:0000988!1.12e-15!182;CL:0000624!3.11e-14!6;CL:0002032!9.29e-14!165;CL:0000837!9.29e-14!165;CL:0000898!8.28e-08!3;CL:0000842!1.13e-07!3;CL:0000623!1.26e-07!3;CL:0000825!1.26e-07!3|ontology_enrichment_celltype_v019=CL:0000791;3.93e-50;18!CL:0000789;3.93e-50;18!CL:0002419;3.93e-50;18!CL:0000084;8.44e-35;25!CL:0000625;2.51e-34;11!CL:0000624;1.43e-20;6!CL:0000542;6.94e-15;53!CL:0000898;6.13e-11;3!CL:0000226;9.56e-11;3!CL:0000842;9.56e-11;3!CL:0000623;1.11e-10;3!CL:0000815;1.16e-07;2!CL:0000792;1.16e-07;2!CL:0002677;1.16e-07;2|ontology_enrichment_celltype_v019_2=CL:0000791,3.71e-50,18;CL:0000789,3.71e-50,18;CL:0002420,3.71e-50,18;CL:0002419,3.71e-50,18;CL:0000790,3.71e-50,18;CL:0000084,8.09e-35,25;CL:0000827,8.09e-35,25;CL:0000625,2.39e-34,11;CL:0000838,1.22e-27,52;CL:0000542,5.32e-27,53;CL:0000051,5.32e-27,53;CL:0000624,1.41e-20,6;CL:0002087,3.80e-16,115;CL:0000738,9.69e-15,136;CL:0002031,1.76e-11,120;CL:0000037,2.14e-11,168;CL:0000898,6.13e-11,3;CL:0000226,9.72e-11,3;CL:0000842,9.72e-11,3;CL:0000623,1.14e-10,3;CL:0000825,1.14e-10,3;CL:0000988,1.98e-10,177;CL:0002032,1.64e-08,161;CL:0000837,1.64e-08,161;CL:0000815,1.16e-07,2;CL:0000792,1.16e-07,2;CL:0002677,1.16e-07,2|ontology_enrichment_development_v019=CL:0000790;3.93e-50;18!CL:0000051;6.94e-15;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!5.85e-16!15;UBERON:0000179!5.85e-16!15;UBERON:0000463!5.85e-16!15;UBERON:0002193!2.91e-08!112;UBERON:0002390!4.47e-08!102;UBERON:0003061!4.47e-08!102;UBERON:0004177!2.32e-07!7|ontology_enrichment_uberon_v019=UBERON:0000178;6.81e-24;15!UBERON:0000179;6.81e-24;15!UBERON:0000463;6.81e-24;15!UBERON:0002390;4.98e-15;32!UBERON:0002193;1.60e-11;42!UBERON:0002370;3.96e-07;2!UBERON:0005058;3.96e-07;2!UBERON:0009113;3.96e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.66e-24,15;UBERON:0000179,6.66e-24,15;UBERON:0000463,6.66e-24,15;UBERON:0002370,6.75e-08,4;UBERON:0005058,6.75e-08,4;UBERON:0009113,6.75e-08,4;UBERON:0003295,6.75e-08,4;UBERON:0005562,6.75e-08,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96682138424452,0,0.154816123316076,0,0,0,2.71135202031056,1.84820002233648,1.76160263600908,2.21598163412751,1.40381113229099,2.82114131930607,0.223915474239924,0.647787332037959,0,0.145398238779565,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0.889509253863555,0,0,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,0.560508562981536,2.10707267820062,37.1781465515145,20.4365596629566,12.130488440971,5.85152733867373,8.14805666583976,13.7299863663073,1.94826728407911,1.22551502573691,7.36514768687093,13.9566353587681,9.47813523177554,0.896639238079726,2.21100890851793,3.12432018746985,3.59255023121603,7.24507714337631,71.6224100072752,68.4904519909665,28.2245914273437,2.49280553934646,24.526111590523,19.2431369470273,15.9402405972287,11.4683549156675,5.85975108470777,5.70271226669025,18.8218898847216,16.6382594500744,18.7396089828519,12.0756398542449,9.85353596305256,3.62892137804518,1.33720097891754,3.04131248153878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.45747648969251,6.03757209606648,8.34229735818364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.58273670531796,18.7671354712197,6.40365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05958087385735,3.0585488285695,3.98753031021914,11.1968934465161,11.9295059194996,2.59389324477087,5.40031437238115,2.37937552888281,0,0,0,0,0,0,0.797131363644112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.552567831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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2272 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3701 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=-55bp_to_ENST00000466788_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_3_at_FHIT_5end | |||
|id=chr3:60066621..60066648,- | |||
|ontology_enrichment_celltype=CL:0000791!1.06e-33!18;CL:0000789!1.06e-33!18;CL:0002420!1.06e-33!18;CL:0002419!1.06e-33!18;CL:0000790!1.06e-33!18;CL:0000838!1.18e-31!52;CL:0000084!5.21e-31!25;CL:0000827!5.21e-31!25;CL:0000542!7.13e-31!53;CL:0000051!7.13e-31!53;CL:0000625!2.22e-23!11;CL:0000738!2.91e-23!140;CL:0002087!4.58e-23!119;CL:0002031!8.38e-18!124;CL:0000037!2.26e-17!172;CL:0000566!2.26e-17!172;CL:0000988!1.12e-15!182;CL:0000624!3.11e-14!6;CL:0002032!9.29e-14!165;CL:0000837!9.29e-14!165;CL:0000898!8.28e-08!3;CL:0000842!1.13e-07!3;CL:0000623!1.26e-07!3;CL:0000825!1.26e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.93e-50;18!CL:0000789;3.93e-50;18!CL:0002419;3.93e-50;18!CL:0000084;8.44e-35;25!CL:0000625;2.51e-34;11!CL:0000624;1.43e-20;6!CL:0000542;6.94e-15;53!CL:0000898;6.13e-11;3!CL:0000226;9.56e-11;3!CL:0000842;9.56e-11;3!CL:0000623;1.11e-10;3!CL:0000815;1.16e-07;2!CL:0000792;1.16e-07;2!CL:0002677;1.16e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.71e-50,18;CL:0000789,3.71e-50,18;CL:0002420,3.71e-50,18;CL:0002419,3.71e-50,18;CL:0000790,3.71e-50,18;CL:0000084,8.09e-35,25;CL:0000827,8.09e-35,25;CL:0000625,2.39e-34,11;CL:0000838,1.22e-27,52;CL:0000542,5.32e-27,53;CL:0000051,5.32e-27,53;CL:0000624,1.41e-20,6;CL:0002087,3.80e-16,115;CL:0000738,9.69e-15,136;CL:0002031,1.76e-11,120;CL:0000037,2.14e-11,168;CL:0000898,6.13e-11,3;CL:0000226,9.72e-11,3;CL:0000842,9.72e-11,3;CL:0000623,1.14e-10,3;CL:0000825,1.14e-10,3;CL:0000988,1.98e-10,177;CL:0002032,1.64e-08,161;CL:0000837,1.64e-08,161;CL:0000815,1.16e-07,2;CL:0000792,1.16e-07,2;CL:0002677,1.16e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;3.93e-50;18!CL:0000051;6.94e-15;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.85e-16!15;UBERON:0000179!5.85e-16!15;UBERON:0000463!5.85e-16!15;UBERON:0002193!2.91e-08!112;UBERON:0002390!4.47e-08!102;UBERON:0003061!4.47e-08!102;UBERON:0004177!2.32e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.81e-24;15!UBERON:0000179;6.81e-24;15!UBERON:0000463;6.81e-24;15!UBERON:0002390;4.98e-15;32!UBERON:0002193;1.60e-11;42!UBERON:0002370;3.96e-07;2!UBERON:0005058;3.96e-07;2!UBERON:0009113;3.96e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.66e-24,15;UBERON:0000179,6.66e-24,15;UBERON:0000463,6.66e-24,15;UBERON:0002370,6.75e-08,4;UBERON:0005058,6.75e-08,4;UBERON:0009113,6.75e-08,4;UBERON:0003295,6.75e-08,4;UBERON:0005562,6.75e-08,4 | |||
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|short_description=p3@FHIT | |||
}} |
Revision as of 01:06, 13 September 2013
Short description: | p3@FHIT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_FHIT_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -55bp_to_ENST00000466788_5end |
EntrezGene: | FHIT |
HGNC: | 3701 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.71e-50 | 18 |
alpha-beta T cell | 3.71e-50 | 18 |
immature T cell | 3.71e-50 | 18 |
mature T cell | 3.71e-50 | 18 |
immature alpha-beta T cell | 3.71e-50 | 18 |
T cell | 8.09e-35 | 25 |
pro-T cell | 8.09e-35 | 25 |
CD8-positive, alpha-beta T cell | 2.39e-34 | 11 |
lymphoid lineage restricted progenitor cell | 1.22e-27 | 52 |
lymphocyte | 5.32e-27 | 53 |
common lymphoid progenitor | 5.32e-27 | 53 |
CD4-positive, alpha-beta T cell | 1.41e-20 | 6 |
nongranular leukocyte | 3.80e-16 | 115 |
leukocyte | 9.69e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 1.76e-11 | 120 |
hematopoietic stem cell | 2.14e-11 | 168 |
naive T cell | 6.13e-11 | 3 |
single nucleate cell | 9.72e-11 | 3 |
mononuclear cell | 9.72e-11 | 3 |
natural killer cell | 1.14e-10 | 3 |
pro-NK cell | 1.14e-10 | 3 |
hematopoietic cell | 1.98e-10 | 177 |
hematopoietic oligopotent progenitor cell | 1.64e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.64e-08 | 161 |
regulatory T cell | 1.16e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.16e-07 | 2 |
naive regulatory T cell | 1.16e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 6.66e-24 | 15 |
haemolymphatic fluid | 6.66e-24 | 15 |
organism substance | 6.66e-24 | 15 |
thymus | 6.75e-08 | 4 |
hemolymphoid system gland | 6.75e-08 | 4 |
thymic region | 6.75e-08 | 4 |
pharyngeal gland | 6.75e-08 | 4 |
thymus primordium | 6.75e-08 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.