FFCP PHASE1:Mm9::chr16:78576927..78576941,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=67102|HGNC=|MCL_coexpression_id=267|UniProt=Q8VE27,Q9D7G4|association_with_transcript=0bp_to_NM_001252438,NM_001252439,NM_001252440,NM_025967_5end|description=CAGE_peak_3_at_D16Ertd472e_5end|id=chr16:78576927..78576941,-|ontology_enrichment_celltype=CL:0000084!8.48e-08!11;CL:0000827!8.48e-08!11;CL:0000838!1.52e-07!12;CL:0000791!5.79e-07!9;CL:0000789!5.79e-07!9;CL:0002420!5.79e-07!9;CL:0002419!5.79e-07!9;CL:0000790!5.79e-07!9;CL:0000542!7.90e-07!13;CL:0000051!7.90e-07!13|ontology_enrichment_celltype_v019_2=CL:0000084,1.86e-09,11;CL:0000827,1.86e-09,11;CL:0000838,3.89e-09,12;CL:0000791,2.10e-08,9;CL:0000789,2.10e-08,9;CL:0002420,2.10e-08,9;CL:0002419,2.10e-08,9;CL:0000790,2.10e-08,9;CL:0000988,2.39e-08,32;CL:0002032,2.39e-08,32;CL:0000037,2.39e-08,32;CL:0000837,2.39e-08,32;CL:0000542,4.82e-08,13;CL:0000051,4.82e-08,13;CL:0000624,1.32e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0006562!8.49e-11!24;UBERON:0001557!8.49e-11!24;UBERON:0001042!8.49e-11!24;UBERON:0008814!8.49e-11!24;UBERON:0009145!8.49e-11!24;UBERON:0002370!1.97e-10!23;UBERON:0000974!1.97e-10!23;UBERON:0004807!1.97e-10!23;UBERON:0005058!1.97e-10!23;UBERON:0003351!1.97e-10!23;UBERON:0009113!1.97e-10!23;UBERON:0003295!1.97e-10!23;UBERON:0009722!1.97e-10!23;UBERON:0005562!1.97e-10!23;UBERON:0007690!1.97e-10!23;UBERON:0004177!1.02e-09!29;UBERON:0003408!3.03e-09!24;UBERON:0000072!7.82e-09!27;UBERON:0000065!2.66e-08!41;UBERON:0002368!7.66e-08!60;UBERON:0001004!1.40e-07!42;UBERON:0002390!1.47e-07!45;UBERON:0003061!1.47e-07!45;UBERON:0002530!4.96e-07!65;UBERON:0005057!4.96e-07!51;UBERON:0002193!6.09e-07!48|ontology_enrichment_uberon_v019_2=UBERON:0006562,3.49e-13,24;UBERON:0001557,3.49e-13,24;UBERON:0001042,3.49e-13,24;UBERON:0008814,3.49e-13,24;UBERON:0009145,3.49e-13,24;UBERON:0002370,1.01e-12,23;UBERON:0000974,1.01e-12,23;UBERON:0004807,1.01e-12,23;UBERON:0005058,1.01e-12,23;UBERON:0003351,1.01e-12,23;UBERON:0009113,1.01e-12,23;UBERON:0003295,1.01e-12,23;UBERON:0009722,1.01e-12,23;UBERON:0005562,1.01e-12,23;UBERON:0007690,1.01e-12,23;UBERON:0003408,8.52e-12,24;UBERON:0000072,2.50e-11,27;UBERON:0004177,1.73e-10,29;UBERON:0005057,1.73e-10,29;UBERON:0002390,2.61e-10,45;UBERON:0003061,2.61e-10,45;UBERON:0000077,8.20e-10,35;UBERON:0002193,8.47e-10,48;UBERON:0002405,8.47e-10,48;UBERON:0000065,4.25e-09,41;UBERON:0001004,1.28e-08,42;UBERON:0002368,6.50e-08,60;UBERON:0002530,3.16e-07,65;UBERON:0007811,4.61e-07,36|phase1_expression=0.640595388419176,0,0,0,0,0,0.233612640595526,2.58246646883153,10.4183654392233,11.2350972634557,5.47897498321616,5.50427897067821,2.9104124088305,2.79745287740792,2.33176833270964,1.82227740650843,1.39912375625629,1.73504190947031,1.7824876368746,1.69755860719212,0.680346321208558,1.88652807281682,2.61199789138935,0.319984845586813,0.22940928106717,0,0,0,0.190023419456374,0.252030129759931,0,0.635030673459631,0,0,0,0,0.612508068787107,2.51118978442145,1.5626706890476,2.09409497589519,5.88231488031014,5.46436387966757,3.88408282424923,0.629484089877886,0.709638518536602,0.734187008646726,0,0.218025156380447,0.219686182734472,0.777719596297134,0.979904951377538,0,1.00669563634642,5.80289713609076,4.7053131879945,0,0.573066879877513,0.515672092277442,0.404632921719196,0.528990979272033,0.633831403506179,0.677689064138264,0.889294796111139,0,0,0,0.299600110518405,0.384218305321555,0.414758449233911,0.270011876663381,0.210324961351382,0.571301968807607,0,0.61245399607477,0.191690942036473,0,0,0.766124028511126,0.614426133024974,0.395658863190582,0.274462930807229,0,0.837548997004143,0,0.763991238884051,0.294628585473668,0.427115042397309,0.372798891650601,0.454357159999104,0.151143120213571,0.289864488701678,1.72084775396277,2.719885334831,1.07940638327563,0.649776417447669,1.79210754838934,0.702222100658759,1.36344258062446,0,0,0,1.28326477414318,2.54805239706646,0,0.432982082022428,0,1.01104889002957,0.5709193985953,2.07150306917737,1.48442139064825,1.04091196059682,1.82679286987285,1.61430848079241,1.3565037649736,1.29347577849275,1.38233250462643,0.494389935468748,0.86759614151947,1.76922110389975,0.647067399789637,0,0.969750506270444,0,0.292780797011547,0,0.255457055208591,2.87556298814209,1.19980546198682,3.04968544975355,0.748953197024114,0.915001205637253,0.376963056338593,1.39059456153821,0.767146371990992,0.62336413367868,0.811206315338788,1.42575109390443,0.995255764880744,1.76905930903572,0.631325567659422,0.780722657776222,0.689706313300419,0.540186389416048,0.90422890701429,0.884474488967262,0.768682321709099,1.03071897015702,1.81092359517311,0.862271971731369,0.756424320671277,1.23165786914764,1.31517439456545,0.556094498451196,1.0447564995665,1.4404749548556,1.39323986772945,2.1066395619397,1.54408744268829,3.12579849335152,0.414251545071004,0.234526059981096,0.900310307305074,0.473489471170421,0.590292695242212,0.154267112887378,0.232533944750408,0.268273401399619,0.467061369468678,0.658239399653922,0.32833492815819,0.810688095458557,0.2923999748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| ||
|EntrezGene=67102 | |||
|HGNC= | |||
|MCL_coexpression_id=267 | |||
|UniProt=Q8VE27,Q9D7G4 | |||
|association_with_transcript=0bp_to_NM_001252438,NM_001252439,NM_001252440,NM_025967_5end | |||
|description=CAGE_peak_3_at_D16Ertd472e_5end | |||
|id=chr16:78576927..78576941,- | |||
|ontology_enrichment_celltype=CL:0000084!8.48e-08!11;CL:0000827!8.48e-08!11;CL:0000838!1.52e-07!12;CL:0000791!5.79e-07!9;CL:0000789!5.79e-07!9;CL:0002420!5.79e-07!9;CL:0002419!5.79e-07!9;CL:0000790!5.79e-07!9;CL:0000542!7.90e-07!13;CL:0000051!7.90e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.86e-09,11;CL:0000827,1.86e-09,11;CL:0000838,3.89e-09,12;CL:0000791,2.10e-08,9;CL:0000789,2.10e-08,9;CL:0002420,2.10e-08,9;CL:0002419,2.10e-08,9;CL:0000790,2.10e-08,9;CL:0000988,2.39e-08,32;CL:0002032,2.39e-08,32;CL:0000037,2.39e-08,32;CL:0000837,2.39e-08,32;CL:0000542,4.82e-08,13;CL:0000051,4.82e-08,13;CL:0000624,1.32e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006562!8.49e-11!24;UBERON:0001557!8.49e-11!24;UBERON:0001042!8.49e-11!24;UBERON:0008814!8.49e-11!24;UBERON:0009145!8.49e-11!24;UBERON:0002370!1.97e-10!23;UBERON:0000974!1.97e-10!23;UBERON:0004807!1.97e-10!23;UBERON:0005058!1.97e-10!23;UBERON:0003351!1.97e-10!23;UBERON:0009113!1.97e-10!23;UBERON:0003295!1.97e-10!23;UBERON:0009722!1.97e-10!23;UBERON:0005562!1.97e-10!23;UBERON:0007690!1.97e-10!23;UBERON:0004177!1.02e-09!29;UBERON:0003408!3.03e-09!24;UBERON:0000072!7.82e-09!27;UBERON:0000065!2.66e-08!41;UBERON:0002368!7.66e-08!60;UBERON:0001004!1.40e-07!42;UBERON:0002390!1.47e-07!45;UBERON:0003061!1.47e-07!45;UBERON:0002530!4.96e-07!65;UBERON:0005057!4.96e-07!51;UBERON:0002193!6.09e-07!48 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006562,3.49e-13,24;UBERON:0001557,3.49e-13,24;UBERON:0001042,3.49e-13,24;UBERON:0008814,3.49e-13,24;UBERON:0009145,3.49e-13,24;UBERON:0002370,1.01e-12,23;UBERON:0000974,1.01e-12,23;UBERON:0004807,1.01e-12,23;UBERON:0005058,1.01e-12,23;UBERON:0003351,1.01e-12,23;UBERON:0009113,1.01e-12,23;UBERON:0003295,1.01e-12,23;UBERON:0009722,1.01e-12,23;UBERON:0005562,1.01e-12,23;UBERON:0007690,1.01e-12,23;UBERON:0003408,8.52e-12,24;UBERON:0000072,2.50e-11,27;UBERON:0004177,1.73e-10,29;UBERON:0005057,1.73e-10,29;UBERON:0002390,2.61e-10,45;UBERON:0003061,2.61e-10,45;UBERON:0000077,8.20e-10,35;UBERON:0002193,8.47e-10,48;UBERON:0002405,8.47e-10,48;UBERON:0000065,4.25e-09,41;UBERON:0001004,1.28e-08,42;UBERON:0002368,6.50e-08,60;UBERON:0002530,3.16e-07,65;UBERON:0007811,4.61e-07,36 | |||
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| |||
|short_description=p3@D16Ertd472e | |||
}} |
Revision as of 13:08, 13 September 2013
Short description: | p3@D16Ertd472e |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_D16Ertd472e_5end |
Coexpression cluster: | MCL_coexpression_mm9:267 |
Association with transcript: | 0bp_to_NM_001252438, NM_001252439, NM_001252440, NM_025967_5end |
EntrezGene: | D16Ertd472e |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.86e-09 | 11 |
pro-T cell | 1.86e-09 | 11 |
lymphoid lineage restricted progenitor cell | 3.89e-09 | 12 |
mature alpha-beta T cell | 2.10e-08 | 9 |
alpha-beta T cell | 2.10e-08 | 9 |
immature T cell | 2.10e-08 | 9 |
mature T cell | 2.10e-08 | 9 |
immature alpha-beta T cell | 2.10e-08 | 9 |
hematopoietic cell | 2.39e-08 | 32 |
hematopoietic oligopotent progenitor cell | 2.39e-08 | 32 |
hematopoietic stem cell | 2.39e-08 | 32 |
hematopoietic multipotent progenitor cell | 2.39e-08 | 32 |
lymphocyte | 4.82e-08 | 13 |
common lymphoid progenitor | 4.82e-08 | 13 |
CD4-positive, alpha-beta T cell | 1.32e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
pharynx | 3.49e-13 | 24 |
upper respiratory tract | 3.49e-13 | 24 |
chordate pharynx | 3.49e-13 | 24 |
pharyngeal arch system | 3.49e-13 | 24 |
pharyngeal region of foregut | 3.49e-13 | 24 |
thymus | 1.01e-12 | 23 |
neck | 1.01e-12 | 23 |
respiratory system epithelium | 1.01e-12 | 23 |
hemolymphoid system gland | 1.01e-12 | 23 |
pharyngeal epithelium | 1.01e-12 | 23 |
thymic region | 1.01e-12 | 23 |
pharyngeal gland | 1.01e-12 | 23 |
entire pharyngeal arch endoderm | 1.01e-12 | 23 |
thymus primordium | 1.01e-12 | 23 |
early pharyngeal endoderm | 1.01e-12 | 23 |
gland of gut | 8.52e-12 | 24 |
segment of respiratory tract | 2.50e-11 | 27 |
hemopoietic organ | 1.73e-10 | 29 |
immune organ | 1.73e-10 | 29 |
hematopoietic system | 2.61e-10 | 45 |
blood island | 2.61e-10 | 45 |
mixed endoderm/mesoderm-derived structure | 8.20e-10 | 35 |
hemolymphoid system | 8.47e-10 | 48 |
immune system | 8.47e-10 | 48 |
respiratory tract | 4.25e-09 | 41 |
respiratory system | 1.28e-08 | 42 |
endocrine gland | 6.50e-08 | 60 |
gland | 3.16e-07 | 65 |
craniocervical region | 4.61e-07 | 36 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.