FFCP PHASE1:Hg19::chr6:30850697..30850739,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=780|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2730|TSSclassifier=S|UniProt=D6RBU7,E7ERI6,Q08345,E7EQ23,E7EXB0,E7ES06|association_with_transcript=0bp_to_ENST00000412274,ENST00000437124,ENST00000454612,ENST00000507046,ENST00000507901,ENST00000509639,ENST00000515529_5end|coexpression_cluster_id=C226|description=CAGE_peak_2_at_DDR1_5end|id=chr6:30850697..30850739,+|ontology_enrichment_celltype=CL:0000066!1.71e-27!254;CL:0002076!2.31e-16!43;CL:0000223!4.14e-13!59;CL:0002251!1.96e-08!21;CL:0002368!4.47e-08!13;CL:0002159!2.78e-07!13|ontology_enrichment_celltype_v019=CL:0002076;2.33e-15;42!CL:0002251;1.40e-10;20!CL:0002368;7.04e-10;13!CL:0002159;7.26e-08;14!CL:1000507;3.43e-07;10!CL:1000494;3.43e-07;10!CL:0002202;9.41e-07;9!CL:0002632;9.41e-07;9|ontology_enrichment_celltype_v019_2=CL:0000066,2.04e-31,253;CL:0002076,1.02e-19,42;CL:0000223,1.53e-15,58;CL:0002251,1.33e-10,20;CL:0002368,7.31e-10,13;CL:0002159,6.83e-08,14;CL:1000507,3.35e-07,10;CL:1000494,3.35e-07,10;CL:0002202,9.71e-07,9;CL:0002632,9.71e-07,9|ontology_enrichment_development_v019=CL:0000223;2.09e-08;58|ontology_enrichment_disease=DOID:305!5.19e-22!106;DOID:0050687!3.73e-19!143;DOID:1749!3.99e-09!14;DOID:299!5.66e-08!25|ontology_enrichment_disease_v019=DOID:1749;6.84e-11;14!DOID:299;4.19e-08;25|ontology_enrichment_disease_v019_2=DOID:305,2.12e-18,106;DOID:0050687,4.20e-14,143;DOID:1749,7.47e-11,14;DOID:299,4.18e-08,25|ontology_enrichment_uberon=UBERON:0004119!1.13e-23!169;UBERON:0000925!1.13e-23!169;UBERON:0006595!1.13e-23!169;UBERON:0001007!9.32e-18!155;UBERON:0001555!9.32e-18!155;UBERON:0007026!9.32e-18!155;UBERON:0004921!2.26e-16!129;UBERON:0004185!2.26e-16!129;UBERON:0000064!2.24e-14!219;UBERON:0000077!4.93e-14!130;UBERON:0001004!5.97e-14!72;UBERON:0000464!6.16e-14!104;UBERON:0000481!5.18e-13!347;UBERON:0000062!1.91e-12!511;UBERON:0000466!7.00e-12!126;UBERON:0005177!1.78e-11!107;UBERON:0001041!1.87e-10!98;UBERON:0000065!3.20e-10!53;UBERON:0000475!3.32e-10!365;UBERON:0001008!9.06e-10!45;UBERON:0004121!1.16e-09!169;UBERON:0006554!1.59e-09!44;UBERON:0000924!2.00e-09!173;UBERON:0006601!2.00e-09!173;UBERON:0005911!2.11e-09!82;UBERON:0005153!2.70e-09!37;UBERON:0000922!4.93e-09!612;UBERON:0000063!1.98e-08!97;UBERON:0007023!1.99e-08!115;UBERON:0005181!2.38e-08!35;UBERON:0005178!2.88e-08!34;UBERON:0002224!2.88e-08!34;UBERON:0005157!3.30e-08!51;UBERON:0008947!5.08e-08!38;UBERON:0003258!5.08e-08!38;UBERON:0000161!8.38e-08!35;UBERON:0009569!1.56e-07!113;UBERON:0000468!1.68e-07!659;UBERON:0002050!2.04e-07!605;UBERON:0005423!2.04e-07!605;UBERON:0002553!3.14e-07!70;UBERON:0000923!3.22e-07!604;UBERON:0005291!3.22e-07!604;UBERON:0006598!3.22e-07!604;UBERON:0002532!3.22e-07!604;UBERON:0000153!3.71e-07!129;UBERON:0007811!3.71e-07!129;UBERON:0000072!3.78e-07!46;UBERON:0001048!4.70e-07!168;UBERON:0005409!5.99e-07!35;UBERON:0003104!6.12e-07!238;UBERON:0009142!6.12e-07!238;UBERON:0000467!6.96e-07!625;UBERON:0000033!9.45e-07!123;UBERON:0000480!9.84e-07!626;UBERON:0000489!9.85e-07!32|ontology_enrichment_uberon_v019=UBERON:0006554;1.76e-10;30!UBERON:0001008;1.76e-10;30!UBERON:0004921;1.43e-09;33!UBERON:0000489;6.09e-08;29!UBERON:0001041;8.80e-08;14!UBERON:0005181;3.03e-07;35!UBERON:0004211;3.43e-07;10!UBERON:0009773;3.43e-07;10!UBERON:0001231;3.43e-07;10!UBERON:0004810;3.43e-07;10!UBERON:0005178;4.28e-07;34!UBERON:0002224;4.28e-07;34!UBERON:0002113;7.17e-07;24!UBERON:0011143;7.17e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.27e-20,160;UBERON:0000925,2.27e-20,160;UBERON:0006595,2.27e-20,160;UBERON:0001007,9.65e-15,145;UBERON:0001555,9.65e-15,145;UBERON:0007026,9.65e-15,145;UBERON:0001008,9.81e-14,48;UBERON:0006554,1.98e-13,47;UBERON:0004921,2.31e-13,118;UBERON:0001004,7.75e-12,74;UBERON:0005177,1.02e-11,101;UBERON:0011216,1.41e-09,223;UBERON:0000922,4.61e-09,592;UBERON:0000489,8.63e-09,31;UBERON:0005911,9.38e-09,82;UBERON:0001041,1.01e-08,87;UBERON:0009569,1.50e-08,112;UBERON:0005153,2.18e-08,37;UBERON:0005181,3.63e-08,35;UBERON:0005178,4.74e-08,34;UBERON:0002224,4.74e-08,34;UBERON:0000065,5.52e-08,54;UBERON:0000153,5.79e-08,62;UBERON:0007811,5.79e-08,62;UBERON:0000161,6.58e-08,36;UBERON:0002113,1.12e-07,26;UBERON:0003918,1.12e-07,26;UBERON:0011143,1.12e-07,26;UBERON:0005095,1.12e-07,26;UBERON:0007687,1.12e-07,26;UBERON:0000033,2.89e-07,56;UBERON:0005423,2.90e-07,581;UBERON:0004810,3.35e-07,10;UBERON:0005157,7.21e-07,47|phase1_expression=0,0,0.845726424575827,1.0007329835313,0,0,0,0,0,39.0716959037399,114.439391547478,25.5576405392302,27.6955327139876,0.37129905888014,0,0,0,0,0,1.60057375499824,0.204000691244253,4.38836610069323,3.14859585844162,2.73748850145768,3.13856598987007,3.74425688164961,3.28402357799783,2.51874500203774,0.393364276848904,0,0.619264493264304,118.605337957782,130.422162830982,82.4551442671936,0.232401601740905,0.995184627411951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.84319602106695,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,1.280190667699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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=780 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2730 | |||
|TSSclassifier=S | |||
|UniProt=D6RBU7,E7ERI6,Q08345,E7EQ23,E7EXB0,E7ES06 | |||
|association_with_transcript=0bp_to_ENST00000412274,ENST00000437124,ENST00000454612,ENST00000507046,ENST00000507901,ENST00000509639,ENST00000515529_5end | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_2_at_DDR1_5end | |||
|id=chr6:30850697..30850739,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.71e-27!254;CL:0002076!2.31e-16!43;CL:0000223!4.14e-13!59;CL:0002251!1.96e-08!21;CL:0002368!4.47e-08!13;CL:0002159!2.78e-07!13 | |||
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|ontology_enrichment_development_v019=CL:0000223;2.09e-08;58 | |||
|ontology_enrichment_disease=DOID:305!5.19e-22!106;DOID:0050687!3.73e-19!143;DOID:1749!3.99e-09!14;DOID:299!5.66e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.84e-11;14!DOID:299;4.19e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.12e-18,106;DOID:0050687,4.20e-14,143;DOID:1749,7.47e-11,14;DOID:299,4.18e-08,25 | |||
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|phase1_expression=0,0,0.845726424575827,1.0007329835313,0,0,0,0,0,39.0716959037399,114.439391547478,25.5576405392302,27.6955327139876,0.37129905888014,0,0,0,0,0,1.60057375499824,0.204000691244253,4.38836610069323,3.14859585844162,2.73748850145768,3.13856598987007,3.74425688164961,3.28402357799783,2.51874500203774,0.393364276848904,0,0.619264493264304,118.605337957782,130.422162830982,82.4551442671936,0.232401601740905,0.995184627411951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.84319602106695,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,1.28019066769952,0.400395987036012,0,0.661044872784862,0,0,0.587237189370939,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0.977766799900771,0,0,0,0,0,0,0,0,0,0,0,0.296573126324121,0,0,0,0,0,0,0.318565414324097,0,0,0.301150238155546,0.127986611154418,0,0.236777252044017,0,0,0,0.289648807765598,0,1.34140171940727,0.383587685530591,0,0,0.144846518960824,0,0.973269740605272,6.71197201864882,3.54767035940102,4.21606971327005,13.7528029272598,174.86173838042,84.5388529548499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,129.956027538475,0.496971951695318,0.12663051166458,0,0.286836620748814,0,0.560677600142307,0,0,0,0.269421344139376,0,2.8757911252537,2.30470369792,0.234321431833797,0,1.71141546463335,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0.226864366320042,0,0,0.211931901159562,0,0.206105058476878,0.257640540045629,0.18611685633159,0,0,0.252433774244115,0,0,1.06502877754984,0.10075209822764,0.339121184620975,58.7512993616422,59.1859081682111,45.0283214760736,17.5642136826617,20.1445247848658,15.686182287385,23.8420426535352,22.2042348770553,15.6940264402607,0,0,0,0,0,1.30137480043828,0.674338760312407,0.723033089650446,0.772057809126758,1.30727666455444,0.949082476444386,1.34831308160164,0.784885860501384,0.769494313892781,0,0,0,0,0,0,0,0,48.703421663073,1.54411029268673,117.323055101821,86.5493500083671,43.6295740266478,58.6084857853492,0,0,0,19.4763080358129,1.99594780200897,0,0.462985512576611,0,59.2653298469456,55.8016005361667,0,0,0,41.2428869541819,64.0011908437655,98.1083672917314,31.882834082214,39.5262156378988,46.3893041789906,0,0,1.65862492432618,1.44119953416961,1.38866676769018,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,1.57275793023962,0,0,0,0.710783897485092,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0.179060963239896,0,0,0.215627574859517,0,3.04913549066956,2.60279707715243,2.31986643833309,2.34522771468088,0.637938751653163,0,0,0,0.24538298343828,0,0,0,0.178428988797162,0,0,0,0,0,0,0.368738337083406,0,0.979005787313703,0.686286847621712,0.206768026122887,0,0.213455115606889,23.340823001362,36.6157966923094,25.7031749330228,0,0,0,0.256278298511402,0,0.160853921143607,0,0,0,0,0,0,37.9498671717694,98.8496898595194,65.0091781887428,0,0,0.524497659837696,50.0831570327227,24.7219232105171,32.1583405362511,40.918982902913,29.2378012033266,0,0,0.863663664408557,0,9.48312531403485,35.6199739436946,26.762008669729,57.344244616082,22.61135022694,0,0,4.87255237721139,9.84043937099117,4.88067591996455,17.2078489451696,0,0,75.8030510154947,94.2587356752956,0,0.386682873168488,0,0,0.137836572484531,0.107420244868274,0,0,0.267096106940212,69.7502342823328,73.0322255987403,63.4235181098083,60.4923529516189,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,1.27948895655667,0,0,0.78494864019923,0.359744915166629,0.54907405947211,0.235624804691373,0,0,0,0.48763373908959,0,0,0.545999645631943,0.141405431953713,0,0,0,0,0,0,0.405820753925408,0.30982349809975,0.281695602532241,0,0.0982490410131212,0.7133421029625,0,0.211107635297664,0,0.379473173765715,0,70.2421422896238,79.0956685132229,123.046812893295,14.1215701165169,199.754492919451,207.219915071179,167.173167883327,96.0243812865091,0,0,0,0.238231775457789,0,0,0.540031437238115,0,12.1779441085319,0,59.0546920514286,0.185803175125719,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,58.2007080669564,0,1.45632626099416,4.34629198682166,0,29.8430605922113,18.4118102116236,23.9585347637401,0,1.1253553312841,0.333926115068718,0,71.9937641716458,11.556383318562,14.919331438682,16.1236958626737,0.613612095012929,1.84627208191604,0,20.5798524127378,15.9328845461292,0,10.456200997515,0,0,2.90799823828566,2.13366625772258,1.99613798001194,44.7935749066601,55.3621799975919,12.3249927823915,140.07973483945,36.1040183415728,29.548460220992,4.48166385213904,4.08246458736556,0.173624994933292,5.31444831488303,1.4471572635049,0,0,0,1.31631238292384,1.41620002574687,54.5146840129339,12.1581408435999,0,42.193194503015,36.621118919187,18.0354637390533,27.4340997369451,12.3656751092514,43.1758168575094,0,0,0,3.60953056987489,4.11731322067253,2.68514539161348,0,0,28.4847387112837,14.2012543098459,15.4074847862995,0.865554558968364,52.7488823471608,30.3409446246453,63.547135073097,0.296521128680622,0.123563938946503,0,3.10045211711114,1.60515529459758,0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| |||
|short_description=p2@DDR1 | |||
}} |
Revision as of 20:06, 13 September 2013
Short description: | p2@DDR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_DDR1_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 0bp_to_ENST00000412274, ENST00000437124, ENST00000454612, ENST00000507046, ENST00000507901, ENST00000509639, ENST00000515529_5end |
EntrezGene: | DDR1 |
HGNC: | 2730 |
UniProt: | D6RBU7E7ERI6Q08345E7EQ23E7EXB0E7ES06 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.04e-31 | 253 |
endo-epithelial cell | 1.02e-19 | 42 |
endodermal cell | 1.53e-15 | 58 |
epithelial cell of alimentary canal | 1.33e-10 | 20 |
respiratory epithelial cell | 7.31e-10 | 13 |
general ecto-epithelial cell | 6.83e-08 | 14 |
kidney tubule cell | 3.35e-07 | 10 |
nephron tubule epithelial cell | 3.35e-07 | 10 |
epithelial cell of tracheobronchial tree | 9.71e-07 | 9 |
epithelial cell of lower respiratory tract | 9.71e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.27e-20 | 160 |
endoderm | 2.27e-20 | 160 |
presumptive endoderm | 2.27e-20 | 160 |
digestive system | 9.65e-15 | 145 |
digestive tract | 9.65e-15 | 145 |
primitive gut | 9.65e-15 | 145 |
renal system | 9.81e-14 | 48 |
urinary system structure | 1.98e-13 | 47 |
subdivision of digestive tract | 2.31e-13 | 118 |
respiratory system | 7.75e-12 | 74 |
trunk region element | 1.02e-11 | 101 |
organ system subdivision | 1.41e-09 | 223 |
embryo | 4.61e-09 | 592 |
cavitated compound organ | 8.63e-09 | 31 |
endo-epithelium | 9.38e-09 | 82 |
foregut | 1.01e-08 | 87 |
subdivision of trunk | 1.50e-08 | 112 |
epithelial bud | 2.18e-08 | 37 |
thoracic segment organ | 3.63e-08 | 35 |
thoracic cavity element | 4.74e-08 | 34 |
thoracic cavity | 4.74e-08 | 34 |
respiratory tract | 5.52e-08 | 54 |
anterior region of body | 5.79e-08 | 62 |
craniocervical region | 5.79e-08 | 62 |
orifice | 6.58e-08 | 36 |
kidney | 1.12e-07 | 26 |
kidney mesenchyme | 1.12e-07 | 26 |
upper urinary tract | 1.12e-07 | 26 |
kidney rudiment | 1.12e-07 | 26 |
kidney field | 1.12e-07 | 26 |
head | 2.89e-07 | 56 |
developing anatomical structure | 2.90e-07 | 581 |
nephron tubule epithelium | 3.35e-07 | 10 |
epithelial fold | 7.21e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.12e-18 | 106 |
cell type cancer | 4.20e-14 | 143 |
squamous cell carcinoma | 7.47e-11 | 14 |
adenocarcinoma | 4.18e-08 | 25 |
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