FFCP PHASE1:Mm9::chr2:113057209..113057251,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=20192|HGNC=|MCL_coexpression_id=90|UniProt=Q14AQ9,B7ZMP2|association_with_transcript=0bp_to_ENSMUST00000134358,ENSMUST00000156757,uc008lpi.2,uc012cba.1_5end|description=CAGE_peak_1_at_Ryr3_5end|id=chr2:113057209..113057251,-|ontology_enrichment_celltype=CL:0000117!7.42e-07!23;CL:0000337!7.42e-07!23|ontology_enrichment_celltype_v019_2=CL:0000117,4.04e-08,23;CL:0000337,4.04e-08,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.22e-11!52;UBERON:0005068!2.22e-11!52;UBERON:0006241!2.22e-11!52;UBERON:0007135!2.22e-11!52;UBERON:0000955!3.21e-11!50;UBERON:0006238!3.21e-11!50;UBERON:0000033!4.45e-11!63;UBERON:0002020!6.16e-11!34;UBERON:0003056!1.03e-10!49;UBERON:0002616!1.21e-10!49;UBERON:0003080!1.09e-09!40;UBERON:0002791!1.51e-09!29;UBERON:0003528!1.51e-09!29;UBERON:0001893!1.51e-09!29;UBERON:0002780!3.68e-09!39;UBERON:0001890!3.68e-09!39;UBERON:0006240!3.68e-09!39;UBERON:0002346!4.29e-09!71;UBERON:0003075!4.29e-09!71;UBERON:0007284!4.29e-09!71;UBERON:0001017!1.81e-07!73;UBERON:0005743!1.81e-07!73;UBERON:0000468!3.10e-07!333;UBERON:0000956!5.40e-07!21;UBERON:0001869!5.40e-07!21;UBERON:0000203!5.40e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.50e-12,34;UBERON:0000073,4.48e-12,54;UBERON:0001049,3.02e-11,52;UBERON:0005068,3.02e-11,52;UBERON:0006241,3.02e-11,52;UBERON:0007135,3.02e-11,52;UBERON:0002346,6.03e-11,64;UBERON:0003075,6.03e-11,64;UBERON:0007284,6.03e-11,64;UBERON:0003528,1.29e-10,29;UBERON:0002791,1.29e-10,29;UBERON:0001893,1.29e-10,29;UBERON:0000955,7.23e-10,47;UBERON:0006238,7.23e-10,47;UBERON:0003056,1.25e-09,49;UBERON:0002616,3.12e-09,46;UBERON:0003080,1.05e-08,40;UBERON:0010371,1.17e-08,73;UBERON:0001017,2.24e-08,73;UBERON:0010314,3.69e-08,92;UBERON:0002780,4.02e-08,39;UBERON:0001890,4.02e-08,39;UBERON:0006240,4.02e-08,39;UBERON:0001016,9.00e-08,75;UBERON:0000956,1.69e-07,21;UBERON:0001869,1.69e-07,21;UBERON:0000203,1.69e-07,21;UBERON:0004121,4.21e-07,95;UBERON:0000924,4.21e-07,95;UBERON:0006601,4.21e-07,95|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,3.57181818634493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.58328969722285,0.139986421625363,0,0.335565212115473,0,0,0,0,0,2.63011399117477,3.70293685490423,5.70448263155561,0,0.889294796111139,0,0,0,0,0,4.56234294157302,5.53524347159932,3.78584930432488,1.71390590642282,3.09215957332259,1.71487118900936,1.24599112323707,2.75765635983006,3.30347642998166,6.89511625660014,5.68344173048101,2.90149833006426,3.65950574409639,3.12548022334056,1.67509799400829,7.31591393041184,7.79271063661732,7.95497180778903,6.40672563595963,3.16879057903011,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0.445326417194474,0.173485326766136,0,0,0.301445281105245,0.23517741427141,0,0,0.144599356919912,0,11.3236794963186,0.220841518460394,0.484875253135222,1.86391761218122,4.68449275218475,2.51336048176146,0.255457055208591,0,0,0,8.53806644607489,64.0500843946077,5.6544458450789,7.30062144807561,9.2057564638919,13.5062228963714,22.5515355664183,0.101839363850316,0.622034853050465,1.26361379216837,2.10441855886474,1.04096354370163,0.689706313300419,1.62055916824814,1.65775299619287,2.38127747029647,3.71529788826064,2.43624483855295,4.65666067330228,0,0.189106080167819,0.175951124163949,0.219195732427575,0.834141747676794,2.089512999133,0.61734640922383,0.199034266818493,0,0,0,4.55676699578104,3.28336483973535,3.42117916775928,7.57583153872673,4.32881309844288,6.17068451549513,4.88321283975857,4.56064782379353,5.02090972178829,3.12663714835613,0.820837320395476,0.405344047729279,0.730999937126662,0.658650345873152,0.805238512562231,21.449574753541,8.43817821510132,0,0,0,0.928946687441754,2.06187938115349,1.21010114774006,2.66853652613844,2.85338439168839,0.949058123089023,0.823494773620054,3.01602250560323,4.37704238490532,3.50935356814416,5.39291645192533,1.51296634912286,1.39398891278057,0.189667900953082,0.799739588268102,0,0.203651327845314,0.775809948670503,0.140271639780637,0.189709611372772,0.147610147979602,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0.162135226775035,0.274561413188081,1.43768206527355,0.372140947668503,0,0,0.179397413521912,0,0.184753190166605,1.51593129416388,2.28150967018836,1.52770577197669,1.17345124144251,3.51763140627813,2.85652369063216,0.585400943573396,1.57635144106191,0.8858587585951,0.478364305972461,0.81931657357869,0.518054945597687,0.144649058581512,0,0,0,0.551873492609465,7.54587772942622,6.09500770279457,0,0.504941854408746,0,0.390438744296638,0,0,0,0,0,0.292255857911312,0,9.63963949265421,4.40014264145633,0.178065603667255,0.162886959353576,13.6925202067204,0,0,0.906970670894253,0.188605079755898,0.295301892880773,0,0.516856586336442,0.727067458955011,1.42598951353889,0.948110273807448,0,0,0.340439605753788,0.900305470156551,0.388076051348264,0.857348140126369,0.532020700926821,1.07021290561242,0,0.304464949114599,0.23467170806371,0,2.20528398054962,0.32977250588296,2.58343082713449,1.02531972377865,0.119372344003136,0.984845398470368,2.04036585640896,4.82105785227325,0,2.47664241555867,0.740778109478847,0.376736914009382,0,0,0,0,0,0,0.790839983952838,5.48962561242491,5.94029374519907,7.94535524854981,8.95286511359328,9.57536859332227,8.84391976261094,4.18809507174447,2.72191443912765,1.24267862617385,0,0.149516546043979,0.165458490457098,0.194451188344048,0,0,0,0.13020438484395,0,0,0.288030006257865,0.948033361884535,0.202725215290164,0.205421914329655,0.25984164595559,0.179026695667481,0.198681354781265,0.240390899039938,0.147689527174577,0.100966449948148,0.228620419965,0,0,0.0962118416403295,0,0.453460767230423,0.221985953374065,0.0897138566094757,0,7.72758376128762,9.57180624801028,8.79127796482872,3.64426244434412,3.00943262421218,7.90652579663893,8.28585425712918,6.30185064783336,4.64003592327956,6.16574267793578,1.5107877947794,6.07520250208625,7.65546045481175,3.17199686288943,6.21312374102184,0.207574695168353,0.798049746802062,1.36586884603307,5.59145449257076,0.838452650511929,2.20612210140017,9.55660929546946,5.97501665992793,11.8740107548972,6.57012750585873,9.88569269571935,6.41329560712659,6.46126401542189,6.97874161213075,5.80098236451694,6.19181798667996,6.60540657885676,6.36600427530227,4.53294490883637,8.83193520806384,9.60033906679163,7.0990322463735,7.86839426826159,8.57543858130738,5.74067220533517,7.61531471025089,7.68297486065645,7.62902163169744,6.92600980613895,7.85599180320834,7.94854621431967,6.40279135441163,6.13846564754534,7.2820315357404,4.82266527452853,5.24602213669686,7.01794825336225,4.72716318906256,7.46024495068489,4.85301122062934,3.2461496986859|short_description=p1@Ryr3}} | ||
|EntrezGene=20192 | |||
|HGNC= | |||
|MCL_coexpression_id=90 | |||
|UniProt=Q14AQ9,B7ZMP2 | |||
|association_with_transcript=0bp_to_ENSMUST00000134358,ENSMUST00000156757,uc008lpi.2,uc012cba.1_5end | |||
|description=CAGE_peak_1_at_Ryr3_5end | |||
|id=chr2:113057209..113057251,- | |||
|ontology_enrichment_celltype=CL:0000117!7.42e-07!23;CL:0000337!7.42e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.04e-08,23;CL:0000337,4.04e-08,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.22e-11!52;UBERON:0005068!2.22e-11!52;UBERON:0006241!2.22e-11!52;UBERON:0007135!2.22e-11!52;UBERON:0000955!3.21e-11!50;UBERON:0006238!3.21e-11!50;UBERON:0000033!4.45e-11!63;UBERON:0002020!6.16e-11!34;UBERON:0003056!1.03e-10!49;UBERON:0002616!1.21e-10!49;UBERON:0003080!1.09e-09!40;UBERON:0002791!1.51e-09!29;UBERON:0003528!1.51e-09!29;UBERON:0001893!1.51e-09!29;UBERON:0002780!3.68e-09!39;UBERON:0001890!3.68e-09!39;UBERON:0006240!3.68e-09!39;UBERON:0002346!4.29e-09!71;UBERON:0003075!4.29e-09!71;UBERON:0007284!4.29e-09!71;UBERON:0001017!1.81e-07!73;UBERON:0005743!1.81e-07!73;UBERON:0000468!3.10e-07!333;UBERON:0000956!5.40e-07!21;UBERON:0001869!5.40e-07!21;UBERON:0000203!5.40e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.50e-12,34;UBERON:0000073,4.48e-12,54;UBERON:0001049,3.02e-11,52;UBERON:0005068,3.02e-11,52;UBERON:0006241,3.02e-11,52;UBERON:0007135,3.02e-11,52;UBERON:0002346,6.03e-11,64;UBERON:0003075,6.03e-11,64;UBERON:0007284,6.03e-11,64;UBERON:0003528,1.29e-10,29;UBERON:0002791,1.29e-10,29;UBERON:0001893,1.29e-10,29;UBERON:0000955,7.23e-10,47;UBERON:0006238,7.23e-10,47;UBERON:0003056,1.25e-09,49;UBERON:0002616,3.12e-09,46;UBERON:0003080,1.05e-08,40;UBERON:0010371,1.17e-08,73;UBERON:0001017,2.24e-08,73;UBERON:0010314,3.69e-08,92;UBERON:0002780,4.02e-08,39;UBERON:0001890,4.02e-08,39;UBERON:0006240,4.02e-08,39;UBERON:0001016,9.00e-08,75;UBERON:0000956,1.69e-07,21;UBERON:0001869,1.69e-07,21;UBERON:0000203,1.69e-07,21;UBERON:0004121,4.21e-07,95;UBERON:0000924,4.21e-07,95;UBERON:0006601,4.21e-07,95 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157731082679119,0,0,3.57181818634493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.58328969722285,0.139986421625363,0,0.335565212115473,0,0,0,0,0,2.63011399117477,3.70293685490423,5.70448263155561,0,0.889294796111139,0,0,0,0,0,4.56234294157302,5.53524347159932,3.78584930432488,1.71390590642282,3.09215957332259,1.71487118900936,1.24599112323707,2.75765635983006,3.30347642998166,6.89511625660014,5.68344173048101,2.90149833006426,3.65950574409639,3.12548022334056,1.67509799400829,7.31591393041184,7.79271063661732,7.95497180778903,6.40672563595963,3.16879057903011,0,0,0,0,0,0,0,0,0.702222100658759,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0.445326417194474,0.173485326766136,0,0,0.301445281105245,0.23517741427141,0,0,0.144599356919912,0,11.3236794963186,0.220841518460394,0.484875253135222,1.86391761218122,4.68449275218475,2.51336048176146,0.255457055208591,0,0,0,8.53806644607489,64.0500843946077,5.6544458450789,7.30062144807561,9.2057564638919,13.5062228963714,22.5515355664183,0.101839363850316,0.622034853050465,1.26361379216837,2.10441855886474,1.04096354370163,0.689706313300419,1.62055916824814,1.65775299619287,2.38127747029647,3.71529788826064,2.43624483855295,4.65666067330228,0,0.189106080167819,0.175951124163949,0.219195732427575,0.834141747676794,2.089512999133,0.61734640922383,0.199034266818493,0,0,0,4.55676699578104,3.28336483973535,3.42117916775928,7.57583153872673,4.32881309844288,6.17068451549513,4.88321283975857,4.56064782379353,5.02090972178829,3.12663714835613,0.820837320395476,0.405344047729279,0.730999937126662,0.658650345873152,0.805238512562231,21.449574753541,8.43817821510132,0,0,0,0.928946687441754,2.06187938115349,1.21010114774006,2.66853652613844,2.85338439168839,0.949058123089023,0.823494773620054,3.01602250560323,4.37704238490532,3.50935356814416,5.39291645192533,1.51296634912286,1.39398891278057,0.189667900953082,0.799739588268102,0,0.203651327845314,0.775809948670503,0.140271639780637,0.189709611372772,0.147610147979602,0,0,0,0.166845105716094,0.196558995113203,0,0,0,0,0,0.162135226775035,0.274561413188081,1.43768206527355,0.372140947668503,0,0,0.179397413521912,0,0.184753190166605,1.51593129416388,2.28150967018836,1.52770577197669,1.17345124144251,3.51763140627813,2.85652369063216,0.585400943573396,1.57635144106191,0.8858587585951,0.478364305972461,0.81931657357869,0.518054945597687,0.144649058581512,0,0,0,0.551873492609465,7.54587772942622,6.09500770279457,0,0.504941854408746,0,0.390438744296638,0,0,0,0,0,0.292255857911312,0,9.63963949265421,4.40014264145633,0.178065603667255,0.162886959353576,13.6925202067204,0,0,0.906970670894253,0.188605079755898,0.295301892880773,0,0.516856586336442,0.727067458955011,1.42598951353889,0.948110273807448,0,0,0.340439605753788,0.900305470156551,0.388076051348264,0.857348140126369,0.532020700926821,1.07021290561242,0,0.304464949114599,0.23467170806371,0,2.20528398054962,0.32977250588296,2.58343082713449,1.02531972377865,0.119372344003136,0.984845398470368,2.04036585640896,4.82105785227325,0,2.47664241555867,0.740778109478847,0.376736914009382,0,0,0,0,0,0,0.790839983952838,5.48962561242491,5.94029374519907,7.94535524854981,8.95286511359328,9.57536859332227,8.84391976261094,4.18809507174447,2.72191443912765,1.24267862617385,0,0.149516546043979,0.165458490457098,0.194451188344048,0,0,0,0.13020438484395,0,0,0.288030006257865,0.948033361884535,0.202725215290164,0.205421914329655,0.25984164595559,0.179026695667481,0.198681354781265,0.240390899039938,0.147689527174577,0.100966449948148,0.228620419965,0,0,0.0962118416403295,0,0.453460767230423,0.221985953374065,0.0897138566094757,0,7.72758376128762,9.57180624801028,8.79127796482872,3.64426244434412,3.00943262421218,7.90652579663893,8.28585425712918,6.30185064783336,4.64003592327956,6.16574267793578,1.5107877947794,6.07520250208625,7.65546045481175,3.17199686288943,6.21312374102184,0.207574695168353,0.798049746802062,1.36586884603307,5.59145449257076,0.838452650511929,2.20612210140017,9.55660929546946,5.97501665992793,11.8740107548972,6.57012750585873,9.88569269571935,6.41329560712659,6.46126401542189,6.97874161213075,5.80098236451694,6.19181798667996,6.60540657885676,6.36600427530227,4.53294490883637,8.83193520806384,9.60033906679163,7.0990322463735,7.86839426826159,8.57543858130738,5.74067220533517,7.61531471025089,7.68297486065645,7.62902163169744,6.92600980613895,7.85599180320834,7.94854621431967,6.40279135441163,6.13846564754534,7.2820315357404,4.82266527452853,5.24602213669686,7.01794825336225,4.72716318906256,7.46024495068489,4.85301122062934,3.2461496986859 | |||
|short_description=p1@Ryr3 | |||
}} |
Revision as of 21:37, 13 September 2013
Short description: | p1@Ryr3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ryr3_5end |
Coexpression cluster: | MCL_coexpression_mm9:90 |
Association with transcript: | 0bp_to_ENSMUST00000134358, ENSMUST00000156757, uc008lpi.2, uc012cba.1_5end |
EntrezGene: | Ryr3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.04e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.04e-08 | 23 |
Ontology term | p-value | n |
---|---|---|
gray matter | 2.50e-12 | 34 |
regional part of nervous system | 4.48e-12 | 54 |
neural tube | 3.02e-11 | 52 |
neural rod | 3.02e-11 | 52 |
future spinal cord | 3.02e-11 | 52 |
neural keel | 3.02e-11 | 52 |
neurectoderm | 6.03e-11 | 64 |
neural plate | 6.03e-11 | 64 |
presumptive neural plate | 6.03e-11 | 64 |
brain grey matter | 1.29e-10 | 29 |
regional part of telencephalon | 1.29e-10 | 29 |
telencephalon | 1.29e-10 | 29 |
brain | 7.23e-10 | 47 |
future brain | 7.23e-10 | 47 |
pre-chordal neural plate | 1.25e-09 | 49 |
regional part of brain | 3.12e-09 | 46 |
anterior neural tube | 1.05e-08 | 40 |
ecto-epithelium | 1.17e-08 | 73 |
central nervous system | 2.24e-08 | 73 |
structure with developmental contribution from neural crest | 3.69e-08 | 92 |
regional part of forebrain | 4.02e-08 | 39 |
forebrain | 4.02e-08 | 39 |
future forebrain | 4.02e-08 | 39 |
nervous system | 9.00e-08 | 75 |
cerebral cortex | 1.69e-07 | 21 |
cerebral hemisphere | 1.69e-07 | 21 |
pallium | 1.69e-07 | 21 |
ectoderm-derived structure | 4.21e-07 | 95 |
ectoderm | 4.21e-07 | 95 |
presumptive ectoderm | 4.21e-07 | 95 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.