FFCP PHASE1:Hg19::chr7:45067265..45067276,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=83605|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21708|TSSclassifier=S|UniProt=C9JUH3|association_with_transcript=0bp_to_ENST00000474617,ENST00000480658,ENST00000482714,ENST00000492883_5end|coexpression_cluster_id=C18|description=CAGE_peak_5_at_CCM2_5end|id=chr7:45067265..45067276,+|ontology_enrichment_celltype=CL:0000037!4.82e-56!172;CL:0000566!4.82e-56!172;CL:0000738!2.28e-52!140;CL:0000988!3.49e-51!182;CL:0002032!8.04e-51!165;CL:0000837!8.04e-51!165;CL:0002087!6.19e-47!119;CL:0002031!1.97e-45!124;CL:0000838!1.95e-43!52;CL:0000542!2.67e-42!53;CL:0000051!2.67e-42!53;CL:0000791!1.87e-23!18;CL:0000789!1.87e-23!18;CL:0002420!1.87e-23!18;CL:0002419!1.87e-23!18;CL:0000790!1.87e-23!18;CL:0000084!1.54e-20!25;CL:0000827!1.54e-20!25;CL:0000945!2.33e-20!24;CL:0000826!2.33e-20!24;CL:0000763!2.35e-15!112;CL:0000049!2.35e-15!112;CL:0000236!1.53e-14!14;CL:0000625!1.74e-14!11;CL:0000766!2.84e-12!76;CL:0000134!2.04e-11!358;CL:0002057!8.96e-11!42;CL:0002320!1.05e-10!365;CL:0002393!1.13e-10!9;CL:0002397!1.13e-10!9;CL:0000839!1.74e-10!70;CL:0000557!3.27e-10!71;CL:0000860!1.32e-09!45;CL:0000624!2.68e-09!6;CL:0002194!7.37e-09!63;CL:0000576!7.37e-09!63;CL:0000040!7.37e-09!63;CL:0000559!7.37e-09!63;CL:0002009!2.35e-08!65;CL:0000219!2.94e-08!390|ontology_enrichment_celltype_v019=CL:0000791;4.70e-39;18!CL:0000789;4.70e-39;18!CL:0002419;4.70e-39;18!CL:0000084;5.18e-30;25!CL:0000542;1.90e-24;53!CL:0000625;3.05e-22;11!CL:0000236;2.85e-18;13!CL:0000624;3.96e-16;6!CL:0000945;9.29e-11;24!CL:0000898;1.69e-09;3!CL:0002087;5.04e-09;104!CL:0000875;4.27e-08;3!CL:0002396;4.27e-08;3!CL:0000815;5.55e-07;2!CL:0000792;5.55e-07;2!CL:0002677;5.55e-07;2|ontology_enrichment_celltype_v019_2=CL:0000838,3.37e-40,52;CL:0000542,2.85e-39,53;CL:0000051,2.85e-39,53;CL:0000791,7.24e-39,18;CL:0000789,7.24e-39,18;CL:0002420,7.24e-39,18;CL:0002419,7.24e-39,18;CL:0000790,7.24e-39,18;CL:0000084,7.20e-30,25;CL:0000827,7.20e-30,25;CL:0000037,1.95e-26,168;CL:0000738,7.90e-25,136;CL:0000988,1.95e-24,177;CL:0002032,4.33e-24,161;CL:0000837,4.33e-24,161;CL:0002087,1.67e-23,115;CL:0002031,1.97e-23,120;CL:0000625,5.81e-22,11;CL:0000236,6.71e-17,14;CL:0000624,3.36e-16,6;CL:0000945,8.98e-11,24;CL:0000826,8.98e-11,24;CL:0000898,1.60e-09,3;CL:0000875,4.28e-08,3;CL:0002396,4.28e-08,3;CL:0000815,5.80e-07,2;CL:0000792,5.80e-07,2;CL:0002677,5.80e-07,2|ontology_enrichment_development_v019=CL:0000790;4.70e-39;18!CL:0000051;1.90e-24;53|ontology_enrichment_disease=DOID:2531!4.53e-08!51;DOID:0060083!4.53e-08!51|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.04e-20!102;UBERON:0003061!1.04e-20!102;UBERON:0002193!1.88e-19!112;UBERON:0002384!9.64e-10!375;UBERON:0002371!1.71e-09!80;UBERON:0000178!2.41e-09!15;UBERON:0000179!2.41e-09!15;UBERON:0000463!2.41e-09!15;UBERON:0004177!4.41e-09!7;UBERON:0002405!4.52e-09!115;UBERON:0001474!3.34e-08!86|ontology_enrichment_uberon_v019=UBERON:0000178;5.73e-10;15!UBERON:0000179;5.73e-10;15!UBERON:0000463;5.73e-10;15!UBERON:0002390;5.37e-07;32|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.80e-11,4;UBERON:0005058,2.80e-11,4;UBERON:0009113,2.80e-11,4;UBERON:0003295,2.80e-11,4;UBERON:0005562,2.80e-11,4;UBERON:0000178,7.66e-10,15;UBERON:0000179,7.66e-10,15;UBERON:0000463,7.66e-10,15;UBERON:0003351,1.68e-07,6;UBERON:0002390,8.51e-07,98;UBERON:0003061,8.51e-07,98|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61130724598361,0.410502947249729,1.10195093839151,0,0.383829398097213,0.154816123316076,0,0,0,0.619737604642413,0.284338464974843,1.17440175733939,0.553995408531877,0.601633342410425,0.868043482863407,0,0.32389366601898,0,1.45398238779565,0.377875943688809,0.727752183563449,0.232429036905685,0.822335776043652,0.309706370895104,0,0,0.236482229888585,0,0,0,0.188242339542605,0,0,0.306083892370903,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,1.26753171787165,1.27562579979026,0.628975936525128,0.898629049171961,0.600707571366025,0.16072558669708,3.42015292489498,1.59133341759272,1.0959849225878,7.03984977845291,3.27683166757279,2.66852776159066,1.70692089026603,4.80475184443215,3.4485146397269,2.64417949113945,0.954053754535364,2.27685187643779,1.17447437874188,0,0,0.560508562981536,0,1.180258620683,3.53709686474248,2.87842098599313,6.52027332023645,5.21475626613745,6.62826928028627,3.89653456815823,9.13565746458423,9.13278313171995,6.42448294292501,6.49929273036037,7.42929654408916,4.29195846947598,4.76869923350661,5.52700035571697,3.18783394308558,3.26230438956533,4.54819407752512,4.18142095219907,4.19244567980995,4.98186641682498,4.81078423675682,5.31341353240956,7.64556994377832,0.651083453856419,3.8018081777935,1.05402583354441,1.15187950038977,6.24653632761729,8.76075832562862,6.56902397536837,1.20964045934839,1.06976078313403,1.44824403882799,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0.132957960518865,0.476981248610684,0.571994910780128,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=83605 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21708 | |||
|TSSclassifier=S | |||
|UniProt=C9JUH3 | |||
|association_with_transcript=0bp_to_ENST00000474617,ENST00000480658,ENST00000482714,ENST00000492883_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_5_at_CCM2_5end | |||
|id=chr7:45067265..45067276,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.82e-56!172;CL:0000566!4.82e-56!172;CL:0000738!2.28e-52!140;CL:0000988!3.49e-51!182;CL:0002032!8.04e-51!165;CL:0000837!8.04e-51!165;CL:0002087!6.19e-47!119;CL:0002031!1.97e-45!124;CL:0000838!1.95e-43!52;CL:0000542!2.67e-42!53;CL:0000051!2.67e-42!53;CL:0000791!1.87e-23!18;CL:0000789!1.87e-23!18;CL:0002420!1.87e-23!18;CL:0002419!1.87e-23!18;CL:0000790!1.87e-23!18;CL:0000084!1.54e-20!25;CL:0000827!1.54e-20!25;CL:0000945!2.33e-20!24;CL:0000826!2.33e-20!24;CL:0000763!2.35e-15!112;CL:0000049!2.35e-15!112;CL:0000236!1.53e-14!14;CL:0000625!1.74e-14!11;CL:0000766!2.84e-12!76;CL:0000134!2.04e-11!358;CL:0002057!8.96e-11!42;CL:0002320!1.05e-10!365;CL:0002393!1.13e-10!9;CL:0002397!1.13e-10!9;CL:0000839!1.74e-10!70;CL:0000557!3.27e-10!71;CL:0000860!1.32e-09!45;CL:0000624!2.68e-09!6;CL:0002194!7.37e-09!63;CL:0000576!7.37e-09!63;CL:0000040!7.37e-09!63;CL:0000559!7.37e-09!63;CL:0002009!2.35e-08!65;CL:0000219!2.94e-08!390 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.70e-39;18!CL:0000789;4.70e-39;18!CL:0002419;4.70e-39;18!CL:0000084;5.18e-30;25!CL:0000542;1.90e-24;53!CL:0000625;3.05e-22;11!CL:0000236;2.85e-18;13!CL:0000624;3.96e-16;6!CL:0000945;9.29e-11;24!CL:0000898;1.69e-09;3!CL:0002087;5.04e-09;104!CL:0000875;4.27e-08;3!CL:0002396;4.27e-08;3!CL:0000815;5.55e-07;2!CL:0000792;5.55e-07;2!CL:0002677;5.55e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.37e-40,52;CL:0000542,2.85e-39,53;CL:0000051,2.85e-39,53;CL:0000791,7.24e-39,18;CL:0000789,7.24e-39,18;CL:0002420,7.24e-39,18;CL:0002419,7.24e-39,18;CL:0000790,7.24e-39,18;CL:0000084,7.20e-30,25;CL:0000827,7.20e-30,25;CL:0000037,1.95e-26,168;CL:0000738,7.90e-25,136;CL:0000988,1.95e-24,177;CL:0002032,4.33e-24,161;CL:0000837,4.33e-24,161;CL:0002087,1.67e-23,115;CL:0002031,1.97e-23,120;CL:0000625,5.81e-22,11;CL:0000236,6.71e-17,14;CL:0000624,3.36e-16,6;CL:0000945,8.98e-11,24;CL:0000826,8.98e-11,24;CL:0000898,1.60e-09,3;CL:0000875,4.28e-08,3;CL:0002396,4.28e-08,3;CL:0000815,5.80e-07,2;CL:0000792,5.80e-07,2;CL:0002677,5.80e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;4.70e-39;18!CL:0000051;1.90e-24;53 | |||
|ontology_enrichment_disease=DOID:2531!4.53e-08!51;DOID:0060083!4.53e-08!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.04e-20!102;UBERON:0003061!1.04e-20!102;UBERON:0002193!1.88e-19!112;UBERON:0002384!9.64e-10!375;UBERON:0002371!1.71e-09!80;UBERON:0000178!2.41e-09!15;UBERON:0000179!2.41e-09!15;UBERON:0000463!2.41e-09!15;UBERON:0004177!4.41e-09!7;UBERON:0002405!4.52e-09!115;UBERON:0001474!3.34e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.73e-10;15!UBERON:0000179;5.73e-10;15!UBERON:0000463;5.73e-10;15!UBERON:0002390;5.37e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.80e-11,4;UBERON:0005058,2.80e-11,4;UBERON:0009113,2.80e-11,4;UBERON:0003295,2.80e-11,4;UBERON:0005562,2.80e-11,4;UBERON:0000178,7.66e-10,15;UBERON:0000179,7.66e-10,15;UBERON:0000463,7.66e-10,15;UBERON:0003351,1.68e-07,6;UBERON:0002390,8.51e-07,98;UBERON:0003061,8.51e-07,98 | |||
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|short_description=p5@CCM2 | |||
}} |
Revision as of 01:23, 14 September 2013
Short description: | p5@CCM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_CCM2_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000474617, ENST00000480658, ENST00000482714, ENST00000492883_5end |
EntrezGene: | CCM2 |
HGNC: | 21708 |
UniProt: | C9JUH3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.37e-40 | 52 |
lymphocyte | 2.85e-39 | 53 |
common lymphoid progenitor | 2.85e-39 | 53 |
mature alpha-beta T cell | 7.24e-39 | 18 |
alpha-beta T cell | 7.24e-39 | 18 |
immature T cell | 7.24e-39 | 18 |
mature T cell | 7.24e-39 | 18 |
immature alpha-beta T cell | 7.24e-39 | 18 |
T cell | 7.20e-30 | 25 |
pro-T cell | 7.20e-30 | 25 |
hematopoietic stem cell | 1.95e-26 | 168 |
leukocyte | 7.90e-25 | 136 |
hematopoietic cell | 1.95e-24 | 177 |
hematopoietic oligopotent progenitor cell | 4.33e-24 | 161 |
hematopoietic multipotent progenitor cell | 4.33e-24 | 161 |
nongranular leukocyte | 1.67e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 1.97e-23 | 120 |
CD8-positive, alpha-beta T cell | 5.81e-22 | 11 |
B cell | 6.71e-17 | 14 |
CD4-positive, alpha-beta T cell | 3.36e-16 | 6 |
lymphocyte of B lineage | 8.98e-11 | 24 |
pro-B cell | 8.98e-11 | 24 |
naive T cell | 1.60e-09 | 3 |
non-classical monocyte | 4.28e-08 | 3 |
CD14-low, CD16-positive monocyte | 4.28e-08 | 3 |
regulatory T cell | 5.80e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.80e-07 | 2 |
naive regulatory T cell | 5.80e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.80e-11 | 4 |
hemolymphoid system gland | 2.80e-11 | 4 |
thymic region | 2.80e-11 | 4 |
pharyngeal gland | 2.80e-11 | 4 |
thymus primordium | 2.80e-11 | 4 |
blood | 7.66e-10 | 15 |
haemolymphatic fluid | 7.66e-10 | 15 |
organism substance | 7.66e-10 | 15 |
pharyngeal epithelium | 1.68e-07 | 6 |
hematopoietic system | 8.51e-07 | 98 |
blood island | 8.51e-07 | 98 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.