FFCP PHASE1:Mm9::chr4:21858438..21858513,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=76132|HGNC=|MCL_coexpression_id=22|UniProt=Q3UMF9,Q8BHV1|association_with_transcript=0bp_to_ENSMUST00000029908,ENSMUST00000123319,ENSMUST00000123481,ENSMUST00000124440,NM_175234,uc008sdk.2,uc008sdl.2,uc008sdm.2,uc008sdn.2_5end|description=CAGE_peak_1_at_6230409E13Rik_5end|id=chr4:21858438..21858513,+|ontology_enrichment_celltype=CL:0000540!4.61e-19!33;CL:0000047!4.61e-19!33;CL:0000031!4.61e-19!33;CL:0000404!4.61e-19!33;CL:0000393!1.82e-18!39;CL:0000211!1.82e-18!39;CL:0000221!4.30e-17!44;CL:0000133!4.30e-17!44;CL:0002319!6.55e-17!43;CL:0000055!8.10e-16!50;CL:0000117!1.59e-15!23;CL:0000337!1.59e-15!23;CL:0002321!8.10e-09!70;CL:0000220!8.10e-09!70|ontology_enrichment_celltype_v019_2=CL:0000540,1.45e-19,33;CL:0000047,1.45e-19,33;CL:0000031,1.45e-19,33;CL:0000404,1.45e-19,33;CL:0000393,5.95e-19,39;CL:0000211,5.95e-19,39;CL:0000221,1.54e-17,44;CL:0000133,1.54e-17,44;CL:0002319,2.37e-17,43;CL:0000117,6.31e-16,23;CL:0000337,6.31e-16,23;CL:0002321,1.87e-09,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.30e-33!75;UBERON:0001016!4.30e-33!75;UBERON:0001017!1.81e-32!73;UBERON:0005743!1.81e-32!73;UBERON:0004121!1.27e-31!102;UBERON:0000924!1.27e-31!102;UBERON:0006601!1.27e-31!102;UBERON:0002346!1.27e-27!71;UBERON:0003075!1.27e-27!71;UBERON:0007284!1.27e-27!71;UBERON:0000033!5.46e-26!63;UBERON:0001049!2.17e-24!52;UBERON:0005068!2.17e-24!52;UBERON:0006241!2.17e-24!52;UBERON:0007135!2.17e-24!52;UBERON:0000955!4.10e-23!50;UBERON:0006238!4.10e-23!50;UBERON:0002616!1.83e-22!49;UBERON:0003056!6.20e-22!49;UBERON:0002020!7.10e-19!34;UBERON:0003080!7.16e-19!40;UBERON:0002780!2.00e-18!39;UBERON:0001890!2.00e-18!39;UBERON:0006240!2.00e-18!39;UBERON:0002791!8.58e-16!29;UBERON:0003528!8.58e-16!29;UBERON:0001893!8.58e-16!29;UBERON:0000153!2.59e-14!94;UBERON:0007811!3.37e-13!86;UBERON:0000956!4.97e-11!21;UBERON:0001869!4.97e-11!21;UBERON:0000203!4.97e-11!21;UBERON:0000468!7.08e-09!333;UBERON:0002619!1.06e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.29e-34,75;UBERON:0001017,2.32e-33,73;UBERON:0004121,9.08e-33,95;UBERON:0000924,9.08e-33,95;UBERON:0006601,9.08e-33,95;UBERON:0002346,4.17e-30,64;UBERON:0003075,4.17e-30,64;UBERON:0007284,4.17e-30,64;UBERON:0010371,9.72e-27,73;UBERON:0000073,1.87e-26,54;UBERON:0001049,4.76e-25,52;UBERON:0005068,4.76e-25,52;UBERON:0006241,4.76e-25,52;UBERON:0007135,4.76e-25,52;UBERON:0003056,1.61e-22,49;UBERON:0000955,9.81e-22,47;UBERON:0006238,9.81e-22,47;UBERON:0010314,1.28e-21,92;UBERON:0002616,4.44e-21,46;UBERON:0002020,2.26e-19,34;UBERON:0003080,2.28e-19,40;UBERON:0002780,6.54e-19,39;UBERON:0001890,6.54e-19,39;UBERON:0006240,6.54e-19,39;UBERON:0003528,3.35e-16,29;UBERON:0002791,3.35e-16,29;UBERON:0001893,3.35e-16,29;UBERON:0000956,2.66e-11,21;UBERON:0001869,2.66e-11,21;UBERON:0000203,2.66e-11,21;UBERON:0002619,6.60e-09,17|phase1_expression=10.089377367602,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.86798702042381,0.0992909512008853,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0.831173226792462,0.204169356262369,0,0,0,0,0,0,11.2048167998264,8.00877756634165,6.05704282133549,3.12956537739216,5.01457859675027,3.73466510648602,6.02732687130279,3.63964696225943,1.43752564364972,0,0,0,5.14518872071894,5.73066879877513,2.06268836910977,49.9721658323206,65.06589045046,69.7214543856797,6.43804610931351,1.77858959222228,0.449949858640699,0.988866362566974,2.1314403448383,2.99600110518405,3.07374644257244,38.6762253910622,42.5268705744826,43.7475919610875,19.7099179238624,19.436431603742,46.3015221032526,39.6800250015499,44.122501757281,25.3266526298594,23.8775322219301,27.1883563863551,53.5458328184587,44.0970442163615,38.5475894212002,20.3803589271008,17.4456409109821,24.90611438762,38.8909732825241,32.1759998605973,54.4286381809878,9.16286939331527,9.8998743739889,1.44932244350839,0,0.679971333707751,0,0,0,1.12355536105401,5.28333999991979,2.07828803682295,4.24007489412408,8.45060518660083,10.2661181931454,12.7402619853323,7.11066703153331,6.71122227134764,6.08063677140237,9.60496445528088,0.79928715803342,1.03575153458869,2.3750742250372,4.16364784238726,7.30717147949139,3.68984795609694,5.87818298155228,3.52766121407114,1.0053327306374,0.494389935468748,1.3013942122792,0,2.58826959915855,0.441683036920787,0.969750506270444,1.86391761218122,19.0307518057506,17.8029700791437,0.510914110417183,0,0,0,16.3271796951257,21.0450277296568,54.1570257606446,18.0777292999968,22.2472447877388,17.6619837875626,18.4955039897244,5.39748628406676,0.622034853050465,0.252722758433675,5.89237196482127,10.1493945510909,11.9549094305406,14.7650946440386,14.1662528765572,17.4173437827399,15.1174189936123,16.7726086961915,10.0894314588216,12.0718076042392,13.0483195315795,12.8444320639683,5.91828477554452,6.95118123063995,6.268538997399,4.32142486456681,5.17489093728082,0,0,0,5.38527008592305,7.03578179943289,2.88099298337624,4.49814997611899,3.73852040320067,2.46827380619805,2.55787339225449,1.07309360559848,1.98501082024188,1.81015834904829,0.985004784474571,0.729619285912702,0.438599962275997,0.658650345873152,0.134206418760372,14.2997165023607,26.6522946062347,0.330418782983798,0,7.67837701926842,5.57368012465052,6.05677068213839,5.44545516483025,2.66853652613844,3.42406127002606,1.42358718463353,2.47048432086016,4.02136334080431,2.78539060857611,2.9244613067868,0,0.216138049874694,1.1948476395262,4.93136542478012,5.82667414309617,4.50830942692322,3.86937522906097,3.49114476901726,2.94570443539338,1.13825766823663,0.295220295959204,0.156998727841375,0.246794327843601,0,1.33476084572875,0.393117990226406,0.224862112384854,0.202860121388503,0,0,0,0.324270453550071,0.549122826376163,1.43768206527355,0.372140947668503,0,0,0,0,0.923765950833023,6.44270800019648,9.12603868075345,4.75286240170527,3.75504397261603,2.01007508930179,0.952174563544055,1.56106918286239,1.89162172927429,1.10732344824387,1.2756381492599,0.655453258862952,0.518054945597687,0.433947175744535,0,0,4.42587845717133,1.93155722413313,19.7477225684984,22.1530087659264,7.37707254195039,1.26235463602186,13.566853434899,18.7410597262386,18.9572590004863,11.9484398976276,11.3627323782021,15.8522857241746,15.382806663646,13.4437694639203,12.6492088942888,25.0630626809009,2.12910127812403,3.91744328067962,6.51547837414304,4.12425307431339,0,7.04063844849446,3.32555912661226,1.69744571780308,2.36241514304618,3.07435147943927,2.84271122485043,5.81653967164009,4.27796854061666,2.52829406348653,1.05418608574999,1.03135543248187,10.8940673841212,10.2634823597847,9.83125996748934,10.7168517515796,10.6404140185364,9.0968096977056,7.40470592709544,8.22055362609418,1.17335854031855,4.87213762986786,2.20528398054962,0.49465875882444,4.35953952078945,2.11095237248546,1.43246812803764,0.820704498725306,0.582961673259701,22.8073121472927,0.341741761595705,1.03193433981611,0.740778109478847,0.188368457004691,0.410082683163076,0.457556346413045,0,0.139951452323658,0.276399947608848,0.954670618015114,11.8625997592926,7.31950081656655,4.21220829205025,3.76358932826044,3.05707589244649,3.37160865962052,3.80205896336545,2.09404753587224,1.29614973291793,3.72803587852155,2.81846469342095,2.39226473670366,2.64733584731356,0.972255941720238,1.93739735216597,1.35164900392623,1.76035857968631,1.8228613878153,2.51662426621706,0.241584120826006,0.864090018773596,0,3.44632865993279,1.95150818613172,1.29920822977795,1.07416017400489,1.39076948346885,0.600977247599844,0.295379054349154,0.100966449948148,0.457240839929999,0.100826185136841,0.0974578807397524,0,0.350630706544707,1.13365191807606,3.55177525398503,0.807424709485281,2.85403847818933,2.51146472241848,2.62755465631655,4.57879060668163,1.71494703263253,0.501572104035363,20.8958181768315,16.5717085142584,21.7700295106971,23.8875923457726,19.182310553578,22.661816921691,15.5255175053315,18.463169332193,20.3914084042892,24.3347346523355,18.2665731748151,27.1336913912701,14.1708892775931,11.4260157022098,11.528723944539,9.92754945630076,4.88942801163553,6.59312183164461,7.06022261101994,6.57012750585873,11.4065684950608,8.67681170375951,7.30403758265083,8.25924466022814,7.12199815049605,8.57328644309533,9.618399053423,7.7163688185482,9.06588981767275,8.68473628792944,6.17164654293748,7.27650805253284,5.48403236878838,6.83128158171944,8.65806299821042,8.71530461284268,7.68297486065645,4.99832451731901,8.82726739998101,11.7839877048125,9.6094364680581,7.48634066054282,8.18462086339379,7.2820315357404,7.52335782826451,14.7388240983388,8.4215379040347,7.95022899978704,6.31251495827183,3.97064554415128,2.78241402744506|short_description=p1@6230409E13Rik}} | ||
|EntrezGene=76132 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=Q3UMF9,Q8BHV1 | |||
|association_with_transcript=0bp_to_ENSMUST00000029908,ENSMUST00000123319,ENSMUST00000123481,ENSMUST00000124440,NM_175234,uc008sdk.2,uc008sdl.2,uc008sdm.2,uc008sdn.2_5end | |||
|description=CAGE_peak_1_at_6230409E13Rik_5end | |||
|id=chr4:21858438..21858513,+ | |||
|ontology_enrichment_celltype=CL:0000540!4.61e-19!33;CL:0000047!4.61e-19!33;CL:0000031!4.61e-19!33;CL:0000404!4.61e-19!33;CL:0000393!1.82e-18!39;CL:0000211!1.82e-18!39;CL:0000221!4.30e-17!44;CL:0000133!4.30e-17!44;CL:0002319!6.55e-17!43;CL:0000055!8.10e-16!50;CL:0000117!1.59e-15!23;CL:0000337!1.59e-15!23;CL:0002321!8.10e-09!70;CL:0000220!8.10e-09!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.45e-19,33;CL:0000047,1.45e-19,33;CL:0000031,1.45e-19,33;CL:0000404,1.45e-19,33;CL:0000393,5.95e-19,39;CL:0000211,5.95e-19,39;CL:0000221,1.54e-17,44;CL:0000133,1.54e-17,44;CL:0002319,2.37e-17,43;CL:0000117,6.31e-16,23;CL:0000337,6.31e-16,23;CL:0002321,1.87e-09,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.30e-33!75;UBERON:0001016!4.30e-33!75;UBERON:0001017!1.81e-32!73;UBERON:0005743!1.81e-32!73;UBERON:0004121!1.27e-31!102;UBERON:0000924!1.27e-31!102;UBERON:0006601!1.27e-31!102;UBERON:0002346!1.27e-27!71;UBERON:0003075!1.27e-27!71;UBERON:0007284!1.27e-27!71;UBERON:0000033!5.46e-26!63;UBERON:0001049!2.17e-24!52;UBERON:0005068!2.17e-24!52;UBERON:0006241!2.17e-24!52;UBERON:0007135!2.17e-24!52;UBERON:0000955!4.10e-23!50;UBERON:0006238!4.10e-23!50;UBERON:0002616!1.83e-22!49;UBERON:0003056!6.20e-22!49;UBERON:0002020!7.10e-19!34;UBERON:0003080!7.16e-19!40;UBERON:0002780!2.00e-18!39;UBERON:0001890!2.00e-18!39;UBERON:0006240!2.00e-18!39;UBERON:0002791!8.58e-16!29;UBERON:0003528!8.58e-16!29;UBERON:0001893!8.58e-16!29;UBERON:0000153!2.59e-14!94;UBERON:0007811!3.37e-13!86;UBERON:0000956!4.97e-11!21;UBERON:0001869!4.97e-11!21;UBERON:0000203!4.97e-11!21;UBERON:0000468!7.08e-09!333;UBERON:0002619!1.06e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.29e-34,75;UBERON:0001017,2.32e-33,73;UBERON:0004121,9.08e-33,95;UBERON:0000924,9.08e-33,95;UBERON:0006601,9.08e-33,95;UBERON:0002346,4.17e-30,64;UBERON:0003075,4.17e-30,64;UBERON:0007284,4.17e-30,64;UBERON:0010371,9.72e-27,73;UBERON:0000073,1.87e-26,54;UBERON:0001049,4.76e-25,52;UBERON:0005068,4.76e-25,52;UBERON:0006241,4.76e-25,52;UBERON:0007135,4.76e-25,52;UBERON:0003056,1.61e-22,49;UBERON:0000955,9.81e-22,47;UBERON:0006238,9.81e-22,47;UBERON:0010314,1.28e-21,92;UBERON:0002616,4.44e-21,46;UBERON:0002020,2.26e-19,34;UBERON:0003080,2.28e-19,40;UBERON:0002780,6.54e-19,39;UBERON:0001890,6.54e-19,39;UBERON:0006240,6.54e-19,39;UBERON:0003528,3.35e-16,29;UBERON:0002791,3.35e-16,29;UBERON:0001893,3.35e-16,29;UBERON:0000956,2.66e-11,21;UBERON:0001869,2.66e-11,21;UBERON:0000203,2.66e-11,21;UBERON:0002619,6.60e-09,17 | |||
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| |||
|short_description=p1@6230409E13Rik | |||
}} |
Revision as of 04:46, 14 September 2013
Short description: | p1@6230409E13Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_6230409E13Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000029908, ENSMUST00000123319, ENSMUST00000123481, ENSMUST00000124440, NM_175234, uc008sdk.2, uc008sdl.2, uc008sdm.2, uc008sdn.2_5end |
EntrezGene: | 6230409E13Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.45e-19 | 33 |
neuronal stem cell | 1.45e-19 | 33 |
neuroblast | 1.45e-19 | 33 |
electrically signaling cell | 1.45e-19 | 33 |
electrically responsive cell | 5.95e-19 | 39 |
electrically active cell | 5.95e-19 | 39 |
ectodermal cell | 1.54e-17 | 44 |
neurectodermal cell | 1.54e-17 | 44 |
neural cell | 2.37e-17 | 43 |
CNS neuron (sensu Vertebrata) | 6.31e-16 | 23 |
neuroblast (sensu Vertebrata) | 6.31e-16 | 23 |
embryonic cell | 1.87e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.29e-34 | 75 |
central nervous system | 2.32e-33 | 73 |
ectoderm-derived structure | 9.08e-33 | 95 |
ectoderm | 9.08e-33 | 95 |
presumptive ectoderm | 9.08e-33 | 95 |
neurectoderm | 4.17e-30 | 64 |
neural plate | 4.17e-30 | 64 |
presumptive neural plate | 4.17e-30 | 64 |
ecto-epithelium | 9.72e-27 | 73 |
regional part of nervous system | 1.87e-26 | 54 |
neural tube | 4.76e-25 | 52 |
neural rod | 4.76e-25 | 52 |
future spinal cord | 4.76e-25 | 52 |
neural keel | 4.76e-25 | 52 |
pre-chordal neural plate | 1.61e-22 | 49 |
brain | 9.81e-22 | 47 |
future brain | 9.81e-22 | 47 |
structure with developmental contribution from neural crest | 1.28e-21 | 92 |
regional part of brain | 4.44e-21 | 46 |
gray matter | 2.26e-19 | 34 |
anterior neural tube | 2.28e-19 | 40 |
regional part of forebrain | 6.54e-19 | 39 |
forebrain | 6.54e-19 | 39 |
future forebrain | 6.54e-19 | 39 |
brain grey matter | 3.35e-16 | 29 |
regional part of telencephalon | 3.35e-16 | 29 |
telencephalon | 3.35e-16 | 29 |
cerebral cortex | 2.66e-11 | 21 |
cerebral hemisphere | 2.66e-11 | 21 |
pallium | 2.66e-11 | 21 |
regional part of cerebral cortex | 6.60e-09 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.