FFCP PHASE1:Hg19::chr9:6757362..6757409,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23081|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17071|TSSclassifier=S|UniProt=F8WCN1,F5H347,B4E239,Q9H3R0,B4E1Y4,B4E142,B7Z3V6|association_with_transcript=-231bp_to_ENST00000438023,ENST00000543771,NM_001146694,NM_001146695,NM_015061,uc003zkg.2,uc003zkh.2,uc010mhv.2,uc010mhw.2,uc011lmi.1,uc011lmj.1,uc011lmk.1_5end|description=CAGE_peak_3_at_KDM4C_5end|id=chr9:6757362..6757409,+|ontology_enrichment_celltype=CL:0000738!3.56e-40!140;CL:0002031!7.68e-39!124;CL:0000037!1.46e-38!172;CL:0000566!1.46e-38!172;CL:0002032!4.20e-36!165;CL:0000837!4.20e-36!165;CL:0000988!9.09e-36!182;CL:0002087!1.96e-34!119;CL:0000557!9.40e-26!71;CL:0000839!3.04e-25!70;CL:0002057!8.20e-25!42;CL:0000860!1.16e-24!45;CL:0000766!5.84e-24!76;CL:0000763!1.72e-23!112;CL:0000049!1.72e-23!112;CL:0002009!5.45e-23!65;CL:0002194!1.03e-21!63;CL:0000576!1.03e-21!63;CL:0000040!1.03e-21!63;CL:0000559!1.03e-21!63;CL:0000838!4.25e-12!52;CL:0000542!2.01e-11!53;CL:0000051!2.01e-11!53;CL:0000134!9.45e-09!358;CL:0000791!2.40e-08!18;CL:0000789!2.40e-08!18;CL:0002420!2.40e-08!18;CL:0002419!2.40e-08!18;CL:0000790!2.40e-08!18;CL:0002320!9.97e-08!365;CL:0000084!1.63e-07!25;CL:0000827!1.63e-07!25;CL:0000063!8.32e-07!578|ontology_enrichment_celltype_v019=CL:0000860;5.68e-20;33!CL:0002057;5.68e-20;33!CL:0000473;4.45e-16;39!CL:0000234;4.45e-16;39!CL:0000576;3.77e-15;48!CL:0000766;4.19e-12;69!CL:0002087;1.32e-10;104!CL:0000738;4.60e-09;136!CL:0000791;1.95e-08;18!CL:0000789;1.95e-08;18!CL:0002419;1.95e-08;18!CL:0000542;1.68e-07;53!CL:0000084;2.69e-07;25!CL:0000763;5.38e-07;100|ontology_enrichment_celltype_v019_2=CL:0000738,6.84e-41,136;CL:0002031,1.31e-39,120;CL:0000037,5.60e-39,168;CL:0000988,1.13e-36,177;CL:0002032,1.68e-36,161;CL:0000837,1.68e-36,161;CL:0002087,5.23e-35,115;CL:0000557,7.96e-27,67;CL:0000839,2.63e-26,66;CL:0000860,5.04e-25,42;CL:0002057,5.04e-25,42;CL:0000766,5.34e-25,72;CL:0000473,2.35e-24,48;CL:0000234,2.35e-24,48;CL:0000763,4.55e-24,108;CL:0000049,4.55e-24,108;CL:0002009,5.12e-24,61;CL:0002194,1.06e-22,59;CL:0000576,1.06e-22,59;CL:0000040,1.06e-22,59;CL:0000559,1.06e-22,59;CL:0000838,4.74e-12,52;CL:0000542,2.70e-11,53;CL:0000051,2.70e-11,53;CL:0000134,1.53e-08,354;CL:0000791,2.08e-08,18;CL:0000789,2.08e-08,18;CL:0002420,2.08e-08,18;CL:0002419,2.08e-08,18;CL:0000790,2.08e-08,18;CL:0002320,1.76e-07,361;CL:0000084,2.05e-07,25;CL:0000827,2.05e-07,25|ontology_enrichment_development_v019=CL:0002057;1.17e-18;42!CL:0000790;1.95e-08;18!CL:0000051;1.68e-07;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!8.55e-25!102;UBERON:0003061!8.55e-25!102;UBERON:0002193!8.99e-23!112;UBERON:0002371!1.35e-22!80;UBERON:0001474!2.10e-19!86;UBERON:0002405!1.10e-15!115;UBERON:0004765!1.53e-14!101;UBERON:0001434!1.53e-14!101;UBERON:0002384!3.92e-07!375;UBERON:0003081!9.23e-07!216|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.40e-25,98;UBERON:0003061,1.40e-25,98;UBERON:0002193,1.60e-23,108;UBERON:0002371,1.65e-23,76;UBERON:0002405,7.17e-22,93;UBERON:0001474,5.97e-20,82;UBERON:0004765,5.60e-17,90;UBERON:0001434,1.59e-13,100;UBERON:0003081,1.14e-07,203;UBERON:0002384,5.60e-07,371|phase1_expression=0.726713517082227,0.642301571672949,0.986680828671798,0,0,1.74467704820074,2.53299878168311,0.631719873426831,0.522371256399677,1.96587149201207,1.39560233594486,5.02415155899396,1.58260186937072,1.73272894144065,0.994192127183747,2.6893005858071,0.602694528023977,1.46062018077475,1.95173119516203,1.47745269692145,1.63200552995402,1.25381888591235,1.14494394852423,3.28498620174922,0.753255837568817,2.67446920117829,3.28402357799783,3.06972047123349,14.1611139665605,13.8178583314997,14.5527155917111,0.919421224478927,1.8072355126695,4.06729411183466,7.51431845628926,2.55904618477359,6.16560922603179,17.7278530730201,14.0381113229099,11.0675544065084,2.01523926815932,4.21061765824673,2.31818010870768,14.9760185942952,13.2256580291083,14.0698755488933,17.664606804832,24.6700732813095,12.3882548358041,15.8230815777183,19.2120529896825,16.553756092201,14.479318590938,14.2006630388442,25.7310324529249,12.6122367493545,18.0118059038178,12.1350681600346,13.7737751566906,30.4882575722289,28.7701706609569,9.89553900560148,13.7629923758926,17.9014395223732,22.346111374401,31.2061873580127,16.8162007228805,14.3211739196344,10.429658368404,18.0266741105247,18.7673845816344,33.5132648748684,30.6968515817658,6.12640330304631,6.37812899895131,6.28975936525128,6.29040334420373,10.2120287132224,7.39337698806569,5.98526761856622,5.17183360717634,7.12390199682072,7.03984977845291,3.82297027883492,8.89509253863555,11.9484462318622,7.20712776664822,5.17277195959035,6.61044872784862,5.72432252721218,13.6611112586268,11.1575065980478,6.11637165000366,14.5388461436928,17.9362740154092,3.68737718685108,14.3598132183098,10.6112905942274,13.9809019319666,8.86088425570594,7.82213439920617,11.8361951433683,13.637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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23081 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17071 | |||
|TSSclassifier=S | |||
|UniProt=F8WCN1,F5H347,B4E239,Q9H3R0,B4E1Y4,B4E142,B7Z3V6 | |||
|association_with_transcript=-231bp_to_ENST00000438023,ENST00000543771,NM_001146694,NM_001146695,NM_015061,uc003zkg.2,uc003zkh.2,uc010mhv.2,uc010mhw.2,uc011lmi.1,uc011lmj.1,uc011lmk.1_5end | |||
|description=CAGE_peak_3_at_KDM4C_5end | |||
|id=chr9:6757362..6757409,+ | |||
|ontology_enrichment_celltype=CL:0000738!3.56e-40!140;CL:0002031!7.68e-39!124;CL:0000037!1.46e-38!172;CL:0000566!1.46e-38!172;CL:0002032!4.20e-36!165;CL:0000837!4.20e-36!165;CL:0000988!9.09e-36!182;CL:0002087!1.96e-34!119;CL:0000557!9.40e-26!71;CL:0000839!3.04e-25!70;CL:0002057!8.20e-25!42;CL:0000860!1.16e-24!45;CL:0000766!5.84e-24!76;CL:0000763!1.72e-23!112;CL:0000049!1.72e-23!112;CL:0002009!5.45e-23!65;CL:0002194!1.03e-21!63;CL:0000576!1.03e-21!63;CL:0000040!1.03e-21!63;CL:0000559!1.03e-21!63;CL:0000838!4.25e-12!52;CL:0000542!2.01e-11!53;CL:0000051!2.01e-11!53;CL:0000134!9.45e-09!358;CL:0000791!2.40e-08!18;CL:0000789!2.40e-08!18;CL:0002420!2.40e-08!18;CL:0002419!2.40e-08!18;CL:0000790!2.40e-08!18;CL:0002320!9.97e-08!365;CL:0000084!1.63e-07!25;CL:0000827!1.63e-07!25;CL:0000063!8.32e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.68e-20;33!CL:0002057;5.68e-20;33!CL:0000473;4.45e-16;39!CL:0000234;4.45e-16;39!CL:0000576;3.77e-15;48!CL:0000766;4.19e-12;69!CL:0002087;1.32e-10;104!CL:0000738;4.60e-09;136!CL:0000791;1.95e-08;18!CL:0000789;1.95e-08;18!CL:0002419;1.95e-08;18!CL:0000542;1.68e-07;53!CL:0000084;2.69e-07;25!CL:0000763;5.38e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,6.84e-41,136;CL:0002031,1.31e-39,120;CL:0000037,5.60e-39,168;CL:0000988,1.13e-36,177;CL:0002032,1.68e-36,161;CL:0000837,1.68e-36,161;CL:0002087,5.23e-35,115;CL:0000557,7.96e-27,67;CL:0000839,2.63e-26,66;CL:0000860,5.04e-25,42;CL:0002057,5.04e-25,42;CL:0000766,5.34e-25,72;CL:0000473,2.35e-24,48;CL:0000234,2.35e-24,48;CL:0000763,4.55e-24,108;CL:0000049,4.55e-24,108;CL:0002009,5.12e-24,61;CL:0002194,1.06e-22,59;CL:0000576,1.06e-22,59;CL:0000040,1.06e-22,59;CL:0000559,1.06e-22,59;CL:0000838,4.74e-12,52;CL:0000542,2.70e-11,53;CL:0000051,2.70e-11,53;CL:0000134,1.53e-08,354;CL:0000791,2.08e-08,18;CL:0000789,2.08e-08,18;CL:0002420,2.08e-08,18;CL:0002419,2.08e-08,18;CL:0000790,2.08e-08,18;CL:0002320,1.76e-07,361;CL:0000084,2.05e-07,25;CL:0000827,2.05e-07,25 | |||
|ontology_enrichment_development_v019=CL:0002057;1.17e-18;42!CL:0000790;1.95e-08;18!CL:0000051;1.68e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.55e-25!102;UBERON:0003061!8.55e-25!102;UBERON:0002193!8.99e-23!112;UBERON:0002371!1.35e-22!80;UBERON:0001474!2.10e-19!86;UBERON:0002405!1.10e-15!115;UBERON:0004765!1.53e-14!101;UBERON:0001434!1.53e-14!101;UBERON:0002384!3.92e-07!375;UBERON:0003081!9.23e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.40e-25,98;UBERON:0003061,1.40e-25,98;UBERON:0002193,1.60e-23,108;UBERON:0002371,1.65e-23,76;UBERON:0002405,7.17e-22,93;UBERON:0001474,5.97e-20,82;UBERON:0004765,5.60e-17,90;UBERON:0001434,1.59e-13,100;UBERON:0003081,1.14e-07,203;UBERON:0002384,5.60e-07,371 | |||
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| |||
|short_description=p3@KDM4C | |||
}} |
Revision as of 09:12, 14 September 2013
Short description: | p3@KDM4C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_KDM4C_5end |
Coexpression cluster: | NA |
Association with transcript: | -231bp_to_ENST00000438023, ENST00000543771, NM_001146694, NM_001146695, NM_015061, uc003zkg.2, uc003zkh.2, uc010mhv.2, uc010mhw.2, uc011lmi.1, uc011lmj.1, uc011lmk.1_5end |
EntrezGene: | KDM4C |
HGNC: | 17071 |
UniProt: | F8WCN1F5H347B4E239Q9H3R0B4E1Y4B4E142B7Z3V6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.40e-25 | 98 |
blood island | 1.40e-25 | 98 |
hemolymphoid system | 1.60e-23 | 108 |
bone marrow | 1.65e-23 | 76 |
immune system | 7.17e-22 | 93 |
bone element | 5.97e-20 | 82 |
skeletal element | 5.60e-17 | 90 |
skeletal system | 1.59e-13 | 100 |
lateral plate mesoderm | 1.14e-07 | 203 |
connective tissue | 5.60e-07 | 371 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.