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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008630
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 41: Line 42:
|is_a=EFO:0002091;;FF:0010026
|is_a=EFO:0002091;;FF:0010026
|is_obsolete=
|is_obsolete=
|library_ids=CNhs12998
|name=testis, adult, pool2
|name=testis, adult, pool2
|namespace=FANTOM5
|namespace=FANTOM5
Line 85: Line 87:
|top_motifs=MYB:10.0864286341;JUN:7.30649851472;RFX1:5.94731829188;ZNF148:4.707496114;NRF1:3.97020896235;SOX17:3.57828104986;NFY{A,B,C}:3.23235705863;BREu{core}:2.78964234405;RFX2..5_RFXANK_RFXAP:2.72147418388;HLF:2.29781240706;GFI1:1.89937320879;ATF2:1.89676354268;ATF4:1.7758756737;ZNF143:1.77169046649;ELK1,4_GABP{A,B1}:1.64321891611;ZFP161:1.61256153861;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.58874724623;NR5A1,2:1.56057557209;FOXN1:1.45356052254;ZBTB16:1.45016916429;SP1:1.43539310045;CREB1:1.36700732239;TEF:1.28072957545;NFIX:1.22453493655;PPARG:1.19440725598;SOX5:1.1901004234;HIF1A:1.13794343925;PITX1..3:0.930040880311;ZIC1..3:0.900969718891;POU6F1:0.831542091063;RXR{A,B,G}:0.807805907362;MTE{core}:0.747665353271;YY1:0.741661855782;TFAP2{A,C}:0.724063823346;ESR1:0.690805263842;HIC1:0.624046777344;XCPE1{core}:0.604777807924;GFI1B:0.582558471684;E2F1..5:0.501103840175;HOXA9_MEIS1:0.461819016117;AR:0.417528926204;bHLH_family:0.380236275922;TFAP2B:0.296931447456;EGR1..3:0.289960552255;NFE2L1:0.282240759808;RREB1:0.26938269631;NKX2-1,4:0.235629426913;NKX3-1:0.23435118842;TFDP1:0.229729571608;ATF6:0.1958112042;PATZ1:0.134949568414;NKX6-1,2:0.125160394449;ZNF423:0.117444722147;HOX{A4,D4}:0.103759656261;EN1,2:0.0825188562409;SNAI1..3:0.080629191679;DMAP1_NCOR{1,2}_SMARC:0.0804570436801;PAX5:0.0792604330331;MTF1:0.0788652888092;IKZF2:0.0536691971517;FOXP1:0.0425025401189;SREBF1,2:0.0416577900706;MED-1{core}:0.0377036225339;RBPJ:0.0293857142075;STAT5{A,B}:0.0188868996803;POU3F1..4:0.0165582242773;GCM1,2:-0.00993599284746;ZBTB6:-0.0346166690073;GZF1:-0.0672392016831;SRF:-0.0853820187491;HSF1,2:-0.110458643952;MYBL2:-0.138850561575;REST:-0.152217204118;LHX3,4:-0.155307062468;SOX2:-0.1639874218;SOX{8,9,10}:-0.165681484707;ATF5_CREB3:-0.167831592503;ALX1:-0.195457471917;MYFfamily:-0.19915692245;PBX1:-0.203467507251;ZEB1:-0.230795066096;EVI1:-0.240199797242;NHLH1,2:-0.265962851489;TEAD1:-0.318253687815;TGIF1:-0.319441646253;PAX1,9:-0.352994749132;TBP:-0.356881354001;GTF2A1,2:-0.35952162664;POU2F1..3:-0.379934491344;HNF4A_NR2F1,2:-0.380064398906;HBP1_HMGB_SSRP1_UBTF:-0.385193744544;HNF1A:-0.392090196003;UFEwm:-0.426471942283;PAX8:-0.441680143903;LMO2:-0.482896540615;GTF2I:-0.502203148936;TOPORS:-0.523912494693;NR3C1:-0.528472682792;PAX3,7:-0.544845220536;RXRA_VDR{dimer}:-0.54529895043;AIRE:-0.58484550891;NANOG{mouse}:-0.594013681728;GATA6:-0.638513212743;FOX{D1,D2}:-0.674995526733;STAT1,3:-0.714482581742;ESRRA:-0.742025485681;HMX1:-0.762401854693;FOXD3:-0.768382131488;CUX2:-0.768403246714;MAZ:-0.770107117237;HOX{A6,A7,B6,B7}:-0.777772633312;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799110882599;ONECUT1,2:-0.807302809542;TFAP4:-0.849854627687;MEF2{A,B,C,D}:-0.862937339679;PDX1:-0.863265561769;MZF1:-0.880408125739;HAND1,2:-0.930472312755;GLI1..3:-0.939449295799;AHR_ARNT_ARNT2:-0.97166797392;HOX{A5,B5}:-0.973299785583;TP53:-0.984571147066;SPIB:-0.998548781676;HES1:-0.999086558721;PRRX1,2:-1.00053572685;MYOD1:-1.01199299946;TFCP2:-1.04024509069;PAX2:-1.04111896929;SPI1:-1.07436548368;TBX4,5:-1.09989591045;TLX1..3_NFIC{dimer}:-1.10034397782;KLF4:-1.10176968209;GATA4:-1.11378482276;FOXM1:-1.12099419532;BPTF:-1.13118482382;DBP:-1.16476959584;IRF7:-1.1703812567;NFKB1_REL_RELA:-1.18721129475;CDX1,2,4:-1.19647811893;NKX2-3_NKX2-5:-1.22908653954;ADNP_IRX_SIX_ZHX:-1.24524236413;RUNX1..3:-1.2500382483;FOS_FOS{B,L1}_JUN{B,D}:-1.25114316637;EBF1:-1.2746834086;FOXO1,3,4:-1.29482734015;TLX2:-1.31336827889;IKZF1:-1.33353697998;FOXQ1:-1.34377985016;NKX3-2:-1.35668073041;NKX2-2,8:-1.35785401655;ETS1,2:-1.36277712851;NFE2:-1.37626661819;T:-1.40018365893;BACH2:-1.41117395696;ELF1,2,4:-1.42947871571;CDC5L:-1.43976354828;ALX4:-1.44044088474;FOX{F1,F2,J1}:-1.44897524059;FOXP3:-1.46297929845;FOSL2:-1.47413588838;TAL1_TCF{3,4,12}:-1.48604910378;IRF1,2:-1.50999376141;LEF1_TCF7_TCF7L1,2:-1.51853060084;RORA:-1.53610256939;XBP1:-1.61060678248;ZNF384:-1.6236676645;VSX1,2:-1.63798164625;SPZ1:-1.68002868737;NR6A1:-1.73600613659;EP300:-1.74639243884;FOXA2:-1.75377336565;SMAD1..7,9:-1.8147297016;NR1H4:-1.84876875708;NFIL3:-1.89712253523;CEBPA,B_DDIT3:-1.91736107783;NFE2L2:-1.96864965697;OCT4_SOX2{dimer}:-1.9907526461;POU1F1:-2.02841732661;PAX6:-2.08878518426;ZNF238:-2.10194572792;STAT2,4,6:-2.14512294725;PRDM1:-2.16486953249;MAFB:-2.17177872798;FOXL1:-2.17547190908;NFATC1..3:-2.19671917853;ARID5B:-2.28379208869;NANOG:-2.72959838955;POU5F1:-2.78517402996;HMGA1,2:-2.88254795919;CRX:-3.07822750668;PAX4:-3.15239800724;FOX{I1,J2}:-4.54855561992
|top_motifs=MYB:10.0864286341;JUN:7.30649851472;RFX1:5.94731829188;ZNF148:4.707496114;NRF1:3.97020896235;SOX17:3.57828104986;NFY{A,B,C}:3.23235705863;BREu{core}:2.78964234405;RFX2..5_RFXANK_RFXAP:2.72147418388;HLF:2.29781240706;GFI1:1.89937320879;ATF2:1.89676354268;ATF4:1.7758756737;ZNF143:1.77169046649;ELK1,4_GABP{A,B1}:1.64321891611;ZFP161:1.61256153861;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.58874724623;NR5A1,2:1.56057557209;FOXN1:1.45356052254;ZBTB16:1.45016916429;SP1:1.43539310045;CREB1:1.36700732239;TEF:1.28072957545;NFIX:1.22453493655;PPARG:1.19440725598;SOX5:1.1901004234;HIF1A:1.13794343925;PITX1..3:0.930040880311;ZIC1..3:0.900969718891;POU6F1:0.831542091063;RXR{A,B,G}:0.807805907362;MTE{core}:0.747665353271;YY1:0.741661855782;TFAP2{A,C}:0.724063823346;ESR1:0.690805263842;HIC1:0.624046777344;XCPE1{core}:0.604777807924;GFI1B:0.582558471684;E2F1..5:0.501103840175;HOXA9_MEIS1:0.461819016117;AR:0.417528926204;bHLH_family:0.380236275922;TFAP2B:0.296931447456;EGR1..3:0.289960552255;NFE2L1:0.282240759808;RREB1:0.26938269631;NKX2-1,4:0.235629426913;NKX3-1:0.23435118842;TFDP1:0.229729571608;ATF6:0.1958112042;PATZ1:0.134949568414;NKX6-1,2:0.125160394449;ZNF423:0.117444722147;HOX{A4,D4}:0.103759656261;EN1,2:0.0825188562409;SNAI1..3:0.080629191679;DMAP1_NCOR{1,2}_SMARC:0.0804570436801;PAX5:0.0792604330331;MTF1:0.0788652888092;IKZF2:0.0536691971517;FOXP1:0.0425025401189;SREBF1,2:0.0416577900706;MED-1{core}:0.0377036225339;RBPJ:0.0293857142075;STAT5{A,B}:0.0188868996803;POU3F1..4:0.0165582242773;GCM1,2:-0.00993599284746;ZBTB6:-0.0346166690073;GZF1:-0.0672392016831;SRF:-0.0853820187491;HSF1,2:-0.110458643952;MYBL2:-0.138850561575;REST:-0.152217204118;LHX3,4:-0.155307062468;SOX2:-0.1639874218;SOX{8,9,10}:-0.165681484707;ATF5_CREB3:-0.167831592503;ALX1:-0.195457471917;MYFfamily:-0.19915692245;PBX1:-0.203467507251;ZEB1:-0.230795066096;EVI1:-0.240199797242;NHLH1,2:-0.265962851489;TEAD1:-0.318253687815;TGIF1:-0.319441646253;PAX1,9:-0.352994749132;TBP:-0.356881354001;GTF2A1,2:-0.35952162664;POU2F1..3:-0.379934491344;HNF4A_NR2F1,2:-0.380064398906;HBP1_HMGB_SSRP1_UBTF:-0.385193744544;HNF1A:-0.392090196003;UFEwm:-0.426471942283;PAX8:-0.441680143903;LMO2:-0.482896540615;GTF2I:-0.502203148936;TOPORS:-0.523912494693;NR3C1:-0.528472682792;PAX3,7:-0.544845220536;RXRA_VDR{dimer}:-0.54529895043;AIRE:-0.58484550891;NANOG{mouse}:-0.594013681728;GATA6:-0.638513212743;FOX{D1,D2}:-0.674995526733;STAT1,3:-0.714482581742;ESRRA:-0.742025485681;HMX1:-0.762401854693;FOXD3:-0.768382131488;CUX2:-0.768403246714;MAZ:-0.770107117237;HOX{A6,A7,B6,B7}:-0.777772633312;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.799110882599;ONECUT1,2:-0.807302809542;TFAP4:-0.849854627687;MEF2{A,B,C,D}:-0.862937339679;PDX1:-0.863265561769;MZF1:-0.880408125739;HAND1,2:-0.930472312755;GLI1..3:-0.939449295799;AHR_ARNT_ARNT2:-0.97166797392;HOX{A5,B5}:-0.973299785583;TP53:-0.984571147066;SPIB:-0.998548781676;HES1:-0.999086558721;PRRX1,2:-1.00053572685;MYOD1:-1.01199299946;TFCP2:-1.04024509069;PAX2:-1.04111896929;SPI1:-1.07436548368;TBX4,5:-1.09989591045;TLX1..3_NFIC{dimer}:-1.10034397782;KLF4:-1.10176968209;GATA4:-1.11378482276;FOXM1:-1.12099419532;BPTF:-1.13118482382;DBP:-1.16476959584;IRF7:-1.1703812567;NFKB1_REL_RELA:-1.18721129475;CDX1,2,4:-1.19647811893;NKX2-3_NKX2-5:-1.22908653954;ADNP_IRX_SIX_ZHX:-1.24524236413;RUNX1..3:-1.2500382483;FOS_FOS{B,L1}_JUN{B,D}:-1.25114316637;EBF1:-1.2746834086;FOXO1,3,4:-1.29482734015;TLX2:-1.31336827889;IKZF1:-1.33353697998;FOXQ1:-1.34377985016;NKX3-2:-1.35668073041;NKX2-2,8:-1.35785401655;ETS1,2:-1.36277712851;NFE2:-1.37626661819;T:-1.40018365893;BACH2:-1.41117395696;ELF1,2,4:-1.42947871571;CDC5L:-1.43976354828;ALX4:-1.44044088474;FOX{F1,F2,J1}:-1.44897524059;FOXP3:-1.46297929845;FOSL2:-1.47413588838;TAL1_TCF{3,4,12}:-1.48604910378;IRF1,2:-1.50999376141;LEF1_TCF7_TCF7L1,2:-1.51853060084;RORA:-1.53610256939;XBP1:-1.61060678248;ZNF384:-1.6236676645;VSX1,2:-1.63798164625;SPZ1:-1.68002868737;NR6A1:-1.73600613659;EP300:-1.74639243884;FOXA2:-1.75377336565;SMAD1..7,9:-1.8147297016;NR1H4:-1.84876875708;NFIL3:-1.89712253523;CEBPA,B_DDIT3:-1.91736107783;NFE2L2:-1.96864965697;OCT4_SOX2{dimer}:-1.9907526461;POU1F1:-2.02841732661;PAX6:-2.08878518426;ZNF238:-2.10194572792;STAT2,4,6:-2.14512294725;PRDM1:-2.16486953249;MAFB:-2.17177872798;FOXL1:-2.17547190908;NFATC1..3:-2.19671917853;ARID5B:-2.28379208869;NANOG:-2.72959838955;POU5F1:-2.78517402996;HMGA1,2:-2.88254795919;CRX:-3.07822750668;PAX4:-3.15239800724;FOX{I1,J2}:-4.54855561992
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008630
|accession_numbers=DRX008740;DRR009612;DRZ001037;DRZ002422;CAGE
|library_id=CNhs12998
}}
}}

Revision as of 20:53, 16 October 2013


Name:testis, adult, pool2
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:tissues
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuetestis
dev stage14-64 years old adult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8101369A-16
catalog numberCat: 636643 Lot: 8101369A-16
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008630
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0.901
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.241
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.209
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.949
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.103
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.103
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0581
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.103
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.151
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.532
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.103
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0.103
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.015
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.17
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.103
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.186
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0785
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0565
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.046
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.103
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.103
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0457
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0802
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.103
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.23
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.103
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.186
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0544
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.103
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0583
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12998

Jaspar motifP-value
MA0002.29.91718e-4
MA0003.10.685
MA0004.10.687
MA0006.10.462
MA0007.10.739
MA0009.10.717
MA0014.10.602
MA0017.10.298
MA0018.21.74399e-5
MA0019.10.054
MA0024.10.0355
MA0025.10.902
MA0027.10.761
MA0028.10.0533
MA0029.10.0424
MA0030.10.877
MA0031.10.291
MA0035.20.0501
MA0038.10.00577
MA0039.20.0587
MA0040.10.604
MA0041.10.296
MA0042.10.865
MA0043.10.00669
MA0046.10.467
MA0047.20.1
MA0048.10.915
MA0050.10.00906
MA0051.10.00817
MA0052.10.689
MA0055.10.174
MA0057.10.939
MA0058.10.731
MA0059.10.514
MA0060.18.48263e-37
MA0061.15.68073e-4
MA0062.20.00402
MA0065.20.78
MA0066.10.341
MA0067.10.442
MA0068.10.0188
MA0069.10.832
MA0070.10.0836
MA0071.10.588
MA0072.10.236
MA0073.10.697
MA0074.10.379
MA0076.10.0098
MA0077.10.189
MA0078.10.0525
MA0079.20.184
MA0080.21.79759e-7
MA0081.10.131
MA0083.10.227
MA0084.10.821
MA0087.10.854
MA0088.10.714
MA0090.10.401
MA0091.10.327
MA0092.10.0745
MA0093.10.645
MA0099.21.71417e-11
MA0100.13.52351e-10
MA0101.10.0133
MA0102.20.0861
MA0103.10.715
MA0104.20.248
MA0105.12.66475e-6
MA0106.10.00474
MA0107.13.53774e-4
MA0108.20.0409
MA0111.10.547
MA0112.25.48458e-4
MA0113.10.274
MA0114.10.366
MA0115.10.0727
MA0116.10.00155
MA0117.10.781
MA0119.10.0389
MA0122.10.661
MA0124.10.953
MA0125.10.86
MA0131.10.0606
MA0135.10.149
MA0136.10.00236
MA0137.20.104
MA0138.20.215
MA0139.10.47
MA0140.19.81642e-4
MA0141.10.773
MA0142.10.174
MA0143.10.308
MA0144.10.0205
MA0145.10.13
MA0146.10.869
MA0147.10.383
MA0148.10.115
MA0149.10.552
MA0150.19.17666e-4
MA0152.10.523
MA0153.10.858
MA0154.15.49567e-4
MA0155.10.666
MA0156.10.09
MA0157.10.366
MA0159.10.281
MA0160.10.684
MA0162.10.245
MA0163.10.0559
MA0164.10.778
MA0258.10.0625
MA0259.10.116



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12998

Novel motifP-value
10.178
100.355
1000.565
1010.529
1020.482
1030.419
1040.59
1050.233
1061.50768e-6
1070.00332
1080.282
1090.861
110.132
1100.381
1110.978
1120.0248
1130.766
1140.329
1150.793
1160.374
1170.599
1180.505
1190.168
120.887
1200.0753
1210.453
1220.892
1230.313
1240.368
1250.662
1260.659
1270.264
1280.00178
1290.561
130.689
1300.402
1310.257
1320.631
1330.968
1340.802
1350.128
1360.0305
1370.227
1380.116
1390.399
140.421
1400.151
1410.162
1420.919
1430.993
1440.949
1450.152
1460.644
1470.421
1480.137
1490.0707
150.362
1500.358
1510.172
1520.0533
1530.283
1540.211
1550.315
1560.597
1570.876
1580.0493
1590.43
160.334
1600.0346
1610.916
1620.818
1630.195
1640.00448
1650.358
1660.375
1670.812
1680.254
1690.0576
170.111
180.0775
190.35
20.115
200.325
210.548
220.314
230.00914
240.811
250.743
260.296
270.0967
280.823
290.969
30.0916
300.792
310.208
320.2
330.754
340.502
350.418
360.0896
370.119
380.501
390.713
40.0552
400.754
410.263
420.329
430.19
440.354
450.631
460.114
470.469
480.379
490.865
50.218
500.978
510.191
520.118
530.279
540.216
550.147
560.238
570.167
580.511
590.0469
60.747
600.0272
610.752
620.258
630.204
640.55
650.119
663.61844e-8
670.516
680.262
690.792
70.7
700.23
710.128
720.495
730.137
740.273
750.312
760.725
770.0759
780.0652
790.594
80.433
800.34
810.299
820.15
830.37
840.515
850.0273
860.362
870.385
880.699
890.118
90.335
900.101
910.182
920.0717
930.324
940.0133
950.854
960.42
970.866
980.681
990.271



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12998


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000473 (testis)
0000991 (gonad)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010026 (human testis - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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