FFCP PHASE1:Hg19::chr1:12123463..12123485,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=943 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11923 | |||
|TSSclassifier=strong | |||
|UniProt=P28908 | |||
|association_with_transcript=29bp_to_ENST00000263932,NM_001243,uc001atq.2,uc010obc.1_5end | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_4_at_TNFRSF8_5end | |||
|id=chr1:12123463..12123485,+ | |||
|ontology_enrichment_celltype=CL:0000453!4.30e-14!5;CL:0000990!1.46e-10!8;CL:0002322!9.94e-09!5;CL:0000451!1.67e-08!10;CL:0000988!3.25e-08!182;CL:0000838!1.31e-07!52;CL:0000542!2.09e-07!53;CL:0000051!2.09e-07!53;CL:0002032!2.14e-07!165;CL:0000837!2.14e-07!165;CL:0000540!2.35e-07!6;CL:0000031!2.35e-07!6;CL:0000404!2.35e-07!6;CL:0001014!3.32e-07!2;CL:0001016!3.32e-07!2;CL:0000037!8.09e-07!172;CL:0000566!8.09e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0001014;3.17e-22;2!CL:0001016;3.17e-22;2!CL:0000542;7.80e-11;53!CL:0000084;1.57e-10;25!CL:0000453;1.84e-09;5!CL:0000840;4.99e-08;5!CL:0000945;4.46e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,3.17e-22,2;CL:0001016,3.17e-22,2;CL:0000838,4.45e-15,52;CL:0000542,9.00e-15,53;CL:0000051,9.00e-15,53;CL:0000988,7.80e-13,177;CL:0000084,1.68e-10,25;CL:0000827,1.68e-10,25;CL:0000453,1.84e-09,5;CL:0002032,6.00e-09,161;CL:0000837,6.00e-09,161;CL:0002031,7.17e-09,120;CL:0000037,1.70e-08,168;CL:0000840,4.99e-08,5;CL:0001029,4.99e-08,5;CL:0000738,1.20e-07,136;CL:0000945,4.54e-07,24;CL:0000826,4.54e-07,24 | |||
|ontology_enrichment_development_v019=CL:0000051;7.80e-11;53 | |||
|ontology_enrichment_disease=DOID:2531!5.36e-09!51;DOID:0060083!5.36e-09!51;DOID:1036!9.23e-09!8;DOID:0060058!2.88e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;3.26e-17;10!DOID:0060060;4.06e-12;1!DOID:0060061;4.06e-12;1!DOID:8691;4.06e-12;1!DOID:2531;7.57e-08;51!DOID:0060083;7.57e-08;51 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,3.07e-17,10;DOID:2531,3.11e-12,51;DOID:0060083,3.11e-12,51;DOID:0060060,4.06e-12,1;DOID:0060061,4.06e-12,1;DOID:8691,4.06e-12,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.41e-12!7;UBERON:0002106!1.89e-08!3;UBERON:0004854!1.89e-08!3;UBERON:0009034!1.89e-08!3;UBERON:0002095!1.89e-08!3;UBERON:0004782!1.89e-08!3;UBERON:0003281!1.89e-08!3;UBERON:0009664!1.89e-08!3;UBERON:0002296!1.89e-08!3;UBERON:0005602!1.89e-08!3;UBERON:0001179!1.89e-08!3;UBERON:0006293!1.89e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;2.20e-10;10!UBERON:0000178;4.40e-07;15!UBERON:0000179;4.40e-07;15!UBERON:0000463;4.40e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,2.20e-10,10;UBERON:0000358,2.20e-10,10;UBERON:0000307,2.20e-10,10;UBERON:0000091,2.20e-10,10;UBERON:0000087,2.20e-10,10;UBERON:0007010,2.20e-10,10;UBERON:0007806,2.20e-10,10;UBERON:0008780,2.20e-10,10;UBERON:0005728,2.20e-10,10;UBERON:0000178,4.40e-07,15;UBERON:0000179,4.40e-07,15;UBERON:0000463,4.40e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22261449196722,1.39571002064908,1.18066171970519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334231370655521,0,0,0,0.896639238079726,2.21100890851793,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0.530119073285941,0,0.10366105501537,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0.207328115540772,0.864719720501769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336255431980582,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23087398947712,0,0,0,0,0,0,9.36124427930818,0,0,0,0,0,0,0,50.2651816391617,0,0,0.828851746593443,0,0,1.47701766553283,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.241192877250816,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0.533034776018635,1.02193298195737,0,0,0.676786981851542,0,0.839107934879214,0.189753732724185,0,0,0,0,0,0,0,0,83.915479416616,107.994882639243,99.3052739796881,0,0,0,0,0,0,0,0,0,0,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.8814803596864,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0.254019996197353,0,0,0.321506296930038,0.412618309791701,0.415440338029185,15.5231985170535,6.1904156364636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97022049798414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0.194860308839388,0.132864840313363,0.981392365535065,0,0,0,17.198916043524,0,0.344429959321631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177404740325278,0.230467975111559,0,0,0,0,0,0,0.314231179832004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340853619036631,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0.128915775947154,1.39917618294901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,2.2437542543236,0.26721740526556,0.551369397209069,0.250707539292375,0,0,0,0,0.213233981900981,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.961705476909699 | |||
|short_description=p4@TNFRSF8 | |||
}} |
Revision as of 16:22, 10 January 2014
Short description: | p4@TNFRSF8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TNFRSF8_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 29bp_to_ENST00000263932, NM_001243, uc001atq.2, uc010obc.1_5end |
EntrezGene: | TNFRSF8 |
HGNC: | 11923 |
UniProt: | P28908 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 3.17e-22 | 2 |
immature CD1a-positive Langerhans cell | 3.17e-22 | 2 |
lymphoid lineage restricted progenitor cell | 4.45e-15 | 52 |
lymphocyte | 9.00e-15 | 53 |
common lymphoid progenitor | 9.00e-15 | 53 |
hematopoietic cell | 7.80e-13 | 177 |
T cell | 1.68e-10 | 25 |
pro-T cell | 1.68e-10 | 25 |
Langerhans cell | 1.84e-09 | 5 |
hematopoietic oligopotent progenitor cell | 6.00e-09 | 161 |
hematopoietic multipotent progenitor cell | 6.00e-09 | 161 |
hematopoietic lineage restricted progenitor cell | 7.17e-09 | 120 |
hematopoietic stem cell | 1.70e-08 | 168 |
immature conventional dendritic cell | 4.99e-08 | 5 |
common dendritic progenitor | 4.99e-08 | 5 |
leukocyte | 1.20e-07 | 136 |
lymphocyte of B lineage | 4.54e-07 | 24 |
pro-B cell | 4.54e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 2.20e-10 | 10 |
blastocyst | 2.20e-10 | 10 |
blastula | 2.20e-10 | 10 |
bilaminar disc | 2.20e-10 | 10 |
inner cell mass | 2.20e-10 | 10 |
cleaving embryo | 2.20e-10 | 10 |
connecting stalk | 2.20e-10 | 10 |
inner cell mass derived epiblast | 2.20e-10 | 10 |
extraembryonic mesoderm | 2.20e-10 | 10 |
blood | 4.40e-07 | 15 |
haemolymphatic fluid | 4.40e-07 | 15 |
organism substance | 4.40e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 3.07e-17 | 10 |
hematologic cancer | 3.11e-12 | 51 |
immune system cancer | 3.11e-12 | 51 |
non-Hodgkin lymphoma | 4.06e-12 | 1 |
cutaneous T cell lymphoma | 4.06e-12 | 1 |
mycosis fungoides | 4.06e-12 | 1 |