FFCP PHASE1:Hg19::chr1:90205152..90205166,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr1:90205152..90205166,+ | |||
|id=chr1:90205152..90205166,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.38e-59!42;CL:0000860!6.04e-55!45;CL:0002009!2.01e-51!65;CL:0002194!1.21e-49!63;CL:0000576!1.21e-49!63;CL:0000040!1.21e-49!63;CL:0000559!1.21e-49!63;CL:0000557!1.71e-46!71;CL:0000839!5.25e-44!70;CL:0000766!7.78e-43!76;CL:0000763!8.89e-29!112;CL:0000049!8.89e-29!112;CL:0002087!1.20e-28!119;CL:0002031!3.26e-27!124;CL:0000738!1.29e-26!140;CL:0000988!5.48e-23!182;CL:0000037!3.81e-20!172;CL:0000566!3.81e-20!172;CL:0002032!6.94e-20!165;CL:0000837!6.94e-20!165;CL:0000080!6.03e-11!6;CL:0000840!1.67e-10!5;CL:0001029!1.67e-10!5;CL:0000134!2.33e-07!358;CL:0002320!4.64e-07!365;CL:0000990!5.11e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.26e-82;33!CL:0002057;2.26e-82;33!CL:0000473;2.04e-56;39!CL:0000234;2.04e-56;39!CL:0000576;3.49e-40;48!CL:0000766;1.28e-23;69!CL:0002087;2.87e-15;104!CL:0000763;8.67e-11;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.85e-76,42;CL:0002057,4.85e-76,42;CL:0000473,3.73e-66,48;CL:0000234,3.73e-66,48;CL:0002194,2.63e-52,59;CL:0000576,2.63e-52,59;CL:0000040,2.63e-52,59;CL:0000559,2.63e-52,59;CL:0002009,1.61e-50,61;CL:0000839,1.62e-46,66;CL:0000557,8.72e-46,67;CL:0000766,1.96e-42,72;CL:0002087,2.15e-28,115;CL:0000763,2.33e-27,108;CL:0000049,2.33e-27,108;CL:0002031,4.40e-27,120;CL:0000738,1.58e-23,136;CL:0000988,1.73e-23,177;CL:0002032,2.26e-19,161;CL:0000837,2.26e-19,161;CL:0000037,1.99e-18,168;CL:0000134,6.70e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;9.30e-54;42!CL:0000049;6.08e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;8.91e-10;1!DOID:0060061;8.91e-10;1!DOID:8691;8.91e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,8.91e-10,1;DOID:0060061,8.91e-10,1;DOID:8691,8.91e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.68e-42!102;UBERON:0003061!2.68e-42!102;UBERON:0002371!1.81e-40!80;UBERON:0002193!8.57e-38!112;UBERON:0001474!3.82e-37!86;UBERON:0004765!1.00e-32!101;UBERON:0001434!1.00e-32!101;UBERON:0002405!8.39e-28!115;UBERON:0003081!6.89e-18!216;UBERON:0002204!8.34e-17!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;6.60e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.21e-41,98;UBERON:0003061,5.21e-41,98;UBERON:0002371,4.58e-40,76;UBERON:0002193,6.10e-37,108;UBERON:0001474,6.12e-37,82;UBERON:0004765,2.07e-33,90;UBERON:0002405,3.05e-32,93;UBERON:0001434,8.76e-30,100;UBERON:0003081,3.97e-18,203;UBERON:0002204,1.38e-16,167;UBERON:0000926,2.06e-10,315;UBERON:0004120,2.06e-10,315;UBERON:0006603,2.06e-10,315;UBERON:0002331,6.22e-08,10;UBERON:0000358,6.22e-08,10;UBERON:0000307,6.22e-08,10;UBERON:0000091,6.22e-08,10;UBERON:0000087,6.22e-08,10;UBERON:0007010,6.22e-08,10;UBERON:0007806,6.22e-08,10;UBERON:0008780,6.22e-08,10;UBERON:0005728,6.22e-08,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,1.10799081706375,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,1.23350366406548,1.23882548358041,2.8769239232215,3.07392847834921,9.22280696565482,3.10271112662957,10.973239620925,13.5426486594342,0.188242339542605,0,0.674170453335254,6.73384563215986,15.0836642725764,16.6227652707751,0,0.398927315243264,0,17.412554317715,23.8301794370279,43.5975574296902,0.75374599577023,3.12889751052121,3.04064382587163,2.42159801053347,25.411156883142,35.7602497808199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0,0,0,0.324547393654683,0.870648686496336,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.04085918757057,2.96553453471607,1.8795950910982,0,0,0,0,0,0,0,0,0,0,0.60129367765797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245772908753719,0,7.59952104248734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:90205152..90205166,+ | |||
}} |
Revision as of 19:30, 10 January 2014
Short description: | p@chr1:90205152..90205166, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:90205152..90205166, + |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.85e-76 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.85e-76 | 42 |
defensive cell | 3.73e-66 | 48 |
phagocyte | 3.73e-66 | 48 |
monopoietic cell | 2.63e-52 | 59 |
monocyte | 2.63e-52 | 59 |
monoblast | 2.63e-52 | 59 |
promonocyte | 2.63e-52 | 59 |
macrophage dendritic cell progenitor | 1.61e-50 | 61 |
myeloid lineage restricted progenitor cell | 1.62e-46 | 66 |
granulocyte monocyte progenitor cell | 8.72e-46 | 67 |
myeloid leukocyte | 1.96e-42 | 72 |
nongranular leukocyte | 2.15e-28 | 115 |
myeloid cell | 2.33e-27 | 108 |
common myeloid progenitor | 2.33e-27 | 108 |
hematopoietic lineage restricted progenitor cell | 4.40e-27 | 120 |
leukocyte | 1.58e-23 | 136 |
hematopoietic cell | 1.73e-23 | 177 |
hematopoietic oligopotent progenitor cell | 2.26e-19 | 161 |
hematopoietic multipotent progenitor cell | 2.26e-19 | 161 |
hematopoietic stem cell | 1.99e-18 | 168 |
mesenchymal cell | 6.70e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.21e-41 | 98 |
blood island | 5.21e-41 | 98 |
bone marrow | 4.58e-40 | 76 |
hemolymphoid system | 6.10e-37 | 108 |
bone element | 6.12e-37 | 82 |
skeletal element | 2.07e-33 | 90 |
immune system | 3.05e-32 | 93 |
skeletal system | 8.76e-30 | 100 |
lateral plate mesoderm | 3.97e-18 | 203 |
musculoskeletal system | 1.38e-16 | 167 |
mesoderm | 2.06e-10 | 315 |
mesoderm-derived structure | 2.06e-10 | 315 |
presumptive mesoderm | 2.06e-10 | 315 |
umbilical cord | 6.22e-08 | 10 |
blastocyst | 6.22e-08 | 10 |
blastula | 6.22e-08 | 10 |
bilaminar disc | 6.22e-08 | 10 |
inner cell mass | 6.22e-08 | 10 |
cleaving embryo | 6.22e-08 | 10 |
connecting stalk | 6.22e-08 | 10 |
inner cell mass derived epiblast | 6.22e-08 | 10 |
extraembryonic mesoderm | 6.22e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 8.91e-10 | 1 |
cutaneous T cell lymphoma | 8.91e-10 | 1 |
mycosis fungoides | 8.91e-10 | 1 |