FFCP PHASE1:Hg19::chr17:15554920..15554929,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10626 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17241 | |||
|TSSclassifier=strong | |||
|UniProt=Q59EB2 | |||
|association_with_transcript=330bp_to_uc002gor.1_5end | |||
|description=CAGE_peak_3_at_TRIM16_5end | |||
|id=chr17:15554920..15554929,- | |||
|ontology_enrichment_celltype=CL:0000066!1.58e-19!254;CL:0000076!3.54e-08!62;CL:0002076!1.18e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000082;1.45e-09;19!CL:0002166;2.86e-07;3!CL:0002076;6.01e-07;42!CL:0002159;7.02e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.44e-15,253;CL:0000082,8.41e-10,19;CL:0002076,7.04e-08,42;CL:0002166,2.77e-07,3;CL:0002159,6.88e-07,14;CL:0002541,6.95e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.86e-11;29 | |||
|ontology_enrichment_disease=DOID:305!2.53e-09!106;DOID:0050687!8.27e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;8.62e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.31e-08,106;DOID:1749,7.15e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.88e-10!169;UBERON:0000925!1.88e-10!169;UBERON:0006595!1.88e-10!169;UBERON:0001004!2.69e-09!72;UBERON:0001007!9.98e-08!155;UBERON:0001555!9.98e-08!155;UBERON:0007026!9.98e-08!155;UBERON:0003102!1.42e-07!95;UBERON:0000161!2.67e-07!35;UBERON:0000065!9.35e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0004807;1.44e-13;22!UBERON:0005911;1.05e-10;36!UBERON:0004802;1.45e-09;19!UBERON:0000115;1.45e-09;19!UBERON:0000072;1.87e-09;37!UBERON:0001708;5.81e-09;4!UBERON:0008895;5.81e-09;4!UBERON:0000065;2.02e-08;44!UBERON:0002048;5.73e-08;22!UBERON:0000117;5.73e-08;22!UBERON:0000171;5.73e-08;22!UBERON:0000170;5.73e-08;22!UBERON:0001737;1.28e-07;9!UBERON:0001557;1.28e-07;9!UBERON:0011159;3.71e-07;5!UBERON:0005178;4.81e-07;34!UBERON:0002224;4.81e-07;34!UBERON:0005181;6.13e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008947,4.32e-12,38;UBERON:0003258,4.32e-12,38;UBERON:0004119,4.89e-12,160;UBERON:0000925,4.89e-12,160;UBERON:0006595,4.89e-12,160;UBERON:0003124,2.53e-10,7;UBERON:0000072,2.56e-10,47;UBERON:0004807,3.77e-10,28;UBERON:0001004,4.59e-10,74;UBERON:0004802,8.41e-10,19;UBERON:0000115,8.41e-10,19;UBERON:0000065,1.45e-09,54;UBERON:0001041,9.69e-09,87;UBERON:0005631,9.70e-09,14;UBERON:0000158,9.70e-09,14;UBERON:0001708,9.73e-09,4;UBERON:0008895,9.73e-09,4;UBERON:0001007,1.79e-08,145;UBERON:0001555,1.79e-08,145;UBERON:0007026,1.79e-08,145;UBERON:0002048,3.62e-08,22;UBERON:0000117,3.62e-08,22;UBERON:0000171,3.62e-08,22;UBERON:0000170,3.62e-08,22;UBERON:0005597,3.62e-08,22;UBERON:0000118,3.62e-08,22;UBERON:0005911,5.69e-08,82;UBERON:0001737,6.18e-08,9;UBERON:0005178,6.84e-08,34;UBERON:0002224,6.84e-08,34;UBERON:0005181,1.40e-07,35;UBERON:0004921,1.83e-07,118;UBERON:0011159,5.55e-07,5;UBERON:0000920,6.95e-07,3;UBERON:0005157,7.19e-07,47 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,2.53299878168311,0,0,3.44027511102112,2.09340350391728,0.873765488520689,0.791300934685361,0.123766352960047,0.331397375727916,0.672325146451775,0,1.46062018077475,0.487932798790507,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,2.409647350226,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0.272906150057846,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,1.0843174571537,0.50133791063589,0.579386075843295,0,0.486634870302636,0.0945348171640679,0.443458794925128,0.43917392846563,0.196468613246569,1.82147644146271,5.19098219898201,0,0.348259474598534,0.398873881556595,0,0,0,0.596287222100115,0,0.347140501607594,0.56530794192401,0,0,0.208994966536811,0,0,0,2.41697590265488,0,3.90499292077071,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,2.18047026071267,0.496971951695318,0.506522046658319,0.397227542439656,0.573673241497627,0.709336764396714,2.80338800071154,4.2699598291882,0.49333509683432,0,0.538842688278752,0.326923806226917,0,0,0.234321431833797,0,0.570471821544449,0.298897361103602,0.117434498643765,0.323745888736263,0.421352420106746,0.408308342509787,0,0.413303124703062,1.18800285728205,0.741800787835671,0,0.718618141816238,0,0,0.277064115484183,0.438977620880838,0.919463387397059,0.150238058906597,0.226864366320042,0.179389635688862,0.213557388818567,0,0,0,0,0.558350568994769,0.168776332241266,0.0974370051611986,0,0.368199594569197,0.484938170456436,0,0.302256294682921,0.169560592310488,1.15956511897978,1.36373060295417,1.43402297694502,0,0,0,0.10366105501537,0,0,3.12899064659632,0,0,0,0,1.30137480043828,0.674338760312407,1.44606617930089,1.98529150918309,1.96091499683166,1.18635309555548,1.48314438976181,0.588664395376038,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.343135620597051,2.08525542276389,0,0.402115889646523,0.277765335475589,0,1.03993478527958,0,0,0.939269553886573,0.866198686566443,0,0.190254152234598,0.790204397959275,0,0,0,0,4.68669169933885,1.00789276919316,1.98485136139341,0.179117045405697,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0.224262168690721,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.602878754119172,0.871533458600294,0.699810938274399,0,0,0,0.479249710983165,0,0,0.434343920002738,0.410952645100767,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0.271265023699736,0.415941723061614,0.535286966391485,0.630809660135739,0.117141414992713,0.601892199455438,0,2.0694614258501,0,0.368738337083406,0.521301686808497,0.783204629850962,0,0,0,0,3.94065842880137,0,1.20956117331872,0.248107807818777,0.61384789315225,0,0,0,0.321707842287215,0,0.154209693802656,0,0.0821271560138091,0.519254429183621,0.116210378459959,0.362578348774867,2.00506470303285,0.368323955743585,0.574072240823034,0.546273504020151,0.262248829918848,1.35359883872224,0.385076685522074,0,1.46139224653261,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.515205058238611,0,0.082509499920588,1.14853107599234,0.650060246036521,0,0.193341436584244,0,0.15350367472613,0,0,0,0.0852266274161009,0.534192213880424,1.81813406897076,0.384380134730212,0.127612712494584,0.4046311234222,0,0,0,0,0,0,0,1.00187420719394,0,0.632758849437452,0.190630193923825,0.255897791311334,0.855877976067841,0,0,0,0,0,0.404364963146632,0,0.421258456238981,0,0,0,0,0.282810863907425,0,0,0,0,0,0,1.21746226177622,0,0.845086807596724,0,0.0982490410131212,0,0,0.422215270595328,0.329294892959902,0.379473173765715,0.349934720244983,0.48111056362756,0,0,0.376575203107117,2.58303223602738,1.68471475667626,1.7737206141467,0.229723400206959,0,0,0,0,0,0,0,0,0,15.3996776842137,2.20536194382929,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0.481764225311099,1.61439765752838,0,0,0,0,0,0,0,0,0,0,0,0.748562161632879,0.439524537815682,0,0.334330152832435,1.70481688083848,2.86493381685228,0.593929361665277,3.37876772309155,0,0,0.222617410045812,0,0,0,0.552567831062295,0,3.06806047506464,0,0.311039587661807,1.07842021376792,2.50629644545853,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0.524759999977174,0.724999575434793,0,0,0,0,0,0.173624994933292,0.885741385813839,0,0,0,0,0,0,3.06732237412927,0.615602068030377,2.05095700524602,0,0.0897576444097721,0,1.5950057986596,1.19076871422421,1.5991043280559,0,0.31396051279005,0,0,0,0,0,0,0,0.816164040795739,0,0,0,0.442287822516696,0,0,0,0,0,0.802577647298789,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0.627865836814451,0,1.13843818411917,0.138674673013139,0,1.07791637155815,2.00236175134926,0,0,0.483781656445426,0.219267951258557,0.410577285266046,1.45483524732629,0.0882561266915003,0,0.274083849293502,0,0,0.782205530939212,4.48889393408589,0.213452994739353,0.599428828746391,1.15272333723285,0,0,0.14405479798815,0.372757606696298,3.77110455386873,1.49494626680975,1.15063130943567,1.93796613509011,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| |||
|short_description=p3@TRIM16 | |||
}} |
Revision as of 14:01, 20 January 2014
Short description: | p3@TRIM16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TRIM16_5end |
Coexpression cluster: | NA |
Association with transcript: | 330bp_to_uc002gor.1_5end |
EntrezGene: | TRIM16 |
HGNC: | 17241 |
UniProt: | Q59EB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.44e-15 | 253 |
epithelial cell of lung | 8.41e-10 | 19 |
endo-epithelial cell | 7.04e-08 | 42 |
epithelial cell of Malassez | 2.77e-07 | 3 |
general ecto-epithelial cell | 6.88e-07 | 14 |
chorionic membrane mesenchymal stem cell | 6.95e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
respiratory primordium | 4.32e-12 | 38 |
endoderm of foregut | 4.32e-12 | 38 |
endoderm-derived structure | 4.89e-12 | 160 |
endoderm | 4.89e-12 | 160 |
presumptive endoderm | 4.89e-12 | 160 |
chorion | 2.53e-10 | 7 |
segment of respiratory tract | 2.56e-10 | 47 |
respiratory system epithelium | 3.77e-10 | 28 |
respiratory system | 4.59e-10 | 74 |
respiratory tract epithelium | 8.41e-10 | 19 |
lung epithelium | 8.41e-10 | 19 |
respiratory tract | 1.45e-09 | 54 |
foregut | 9.69e-09 | 87 |
extraembryonic membrane | 9.70e-09 | 14 |
membranous layer | 9.70e-09 | 14 |
jaw skeleton | 9.73e-09 | 4 |
splanchnocranium | 9.73e-09 | 4 |
digestive system | 1.79e-08 | 145 |
digestive tract | 1.79e-08 | 145 |
primitive gut | 1.79e-08 | 145 |
lung | 3.62e-08 | 22 |
respiratory tube | 3.62e-08 | 22 |
respiration organ | 3.62e-08 | 22 |
pair of lungs | 3.62e-08 | 22 |
lung primordium | 3.62e-08 | 22 |
lung bud | 3.62e-08 | 22 |
endo-epithelium | 5.69e-08 | 82 |
larynx | 6.18e-08 | 9 |
thoracic cavity element | 6.84e-08 | 34 |
thoracic cavity | 6.84e-08 | 34 |
thoracic segment organ | 1.40e-07 | 35 |
subdivision of digestive tract | 1.83e-07 | 118 |
primary subdivision of cranial skeletal system | 5.55e-07 | 5 |
egg chorion | 6.95e-07 | 3 |
epithelial fold | 7.19e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.31e-08 | 106 |
squamous cell carcinoma | 7.15e-07 | 14 |