FFCP PHASE1:Hg19::chr2:20424816..20424834,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6382 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |||
|TSSclassifier=strong | |||
|UniProt=F8WCX9 | |||
|association_with_transcript=20bp_to_ENST00000447124_5end | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_1_at_SDC1_5end | |||
|id=chr2:20424816..20424834,- | |||
|ontology_enrichment_celltype=CL:0000066!5.68e-25!254;CL:0002076!4.40e-17!43;CL:0000223!4.77e-17!59;CL:0000220!3.70e-13!246;CL:0002321!3.70e-13!248;CL:0002368!3.34e-09!13;CL:0002251!9.81e-07!21;CL:0002202!9.95e-07!9;CL:0002632!9.95e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.47e-14;42!CL:0002368;4.02e-10;13!CL:0002202;2.35e-07;9!CL:0002632;2.35e-07;9!CL:0002251;9.63e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.10e-20,253;CL:0002076,3.70e-18,42;CL:0000223,2.02e-17,58;CL:0002368,4.13e-10,13;CL:0002321,3.35e-09,250;CL:0002202,2.40e-07,9;CL:0002632,2.40e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;8.74e-10;58 | |||
|ontology_enrichment_disease=DOID:305!4.05e-11!106;DOID:0050687!2.47e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.54e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!5.33e-27!169;UBERON:0000925!5.33e-27!169;UBERON:0006595!5.33e-27!169;UBERON:0001007!7.61e-21!155;UBERON:0001555!7.61e-21!155;UBERON:0007026!7.61e-21!155;UBERON:0003104!1.54e-20!238;UBERON:0009142!1.54e-20!238;UBERON:0000077!3.26e-19!130;UBERON:0004921!4.67e-18!129;UBERON:0004185!4.67e-18!129;UBERON:0002100!2.79e-17!216;UBERON:0000466!1.73e-15!126;UBERON:0000475!1.99e-15!365;UBERON:0000464!1.58e-14!104;UBERON:0003102!3.02e-14!95;UBERON:0001004!1.69e-13!72;UBERON:0001041!1.56e-12!98;UBERON:0000481!2.43e-12!347;UBERON:0009569!1.27e-11!113;UBERON:0005177!2.78e-11!107;UBERON:0005911!1.09e-10!82;UBERON:0000161!1.46e-10!35;UBERON:0001048!7.67e-10!168;UBERON:0000065!8.19e-10!53;UBERON:0000468!8.98e-10!659;UBERON:0005156!1.08e-09!59;UBERON:0000990!1.08e-09!59;UBERON:0001008!1.61e-09!45;UBERON:0005153!2.91e-09!37;UBERON:0000480!3.71e-09!626;UBERON:0006554!3.87e-09!44;UBERON:0005256!4.59e-09!143;UBERON:0000467!6.25e-09!625;UBERON:0003100!6.60e-09!41;UBERON:0005178!1.21e-08!34;UBERON:0002224!1.21e-08!34;UBERON:0000062!1.55e-08!511;UBERON:0005157!5.47e-08!51;UBERON:0005181!5.74e-08!35;UBERON:0007196!1.16e-07!14;UBERON:0001558!1.16e-07!14;UBERON:0004175!1.38e-07!25;UBERON:0002553!1.83e-07!70;UBERON:0003133!2.09e-07!48;UBERON:0008947!2.17e-07!38;UBERON:0003258!2.17e-07!38;UBERON:0000915!2.91e-07!52;UBERON:0001444!4.15e-07!48;UBERON:0003134!4.94e-07!37;UBERON:0000474!4.94e-07!37;UBERON:0005795!5.04e-07!22;UBERON:0000166!5.49e-07!21;UBERON:0000072!6.09e-07!46;UBERON:0003975!6.10e-07!22;UBERON:0000165!6.53e-07!28;UBERON:0000930!6.53e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0005178;6.47e-08;34!UBERON:0002224;6.47e-08;34!UBERON:0007196;2.09e-07;15!UBERON:0001558;2.09e-07;15!UBERON:0005181;2.50e-07;35!UBERON:0000065;5.39e-07;44!UBERON:0001004;6.90e-07;65!UBERON:0003100;7.19e-07;41!UBERON:0006554;7.26e-07;30!UBERON:0001008;7.26e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.92e-24,160;UBERON:0000925,1.92e-24,160;UBERON:0006595,1.92e-24,160;UBERON:0001007,1.72e-18,145;UBERON:0001555,1.72e-18,145;UBERON:0007026,1.72e-18,145;UBERON:0004921,7.73e-18,118;UBERON:0002100,2.52e-16,199;UBERON:0001004,1.32e-13,74;UBERON:0003102,3.83e-13,99;UBERON:0005177,7.60e-13,101;UBERON:0001041,9.22e-13,87;UBERON:0001008,2.28e-12,48;UBERON:0006554,6.32e-12,47;UBERON:0000161,5.38e-11,36;UBERON:0009569,7.75e-11,112;UBERON:0005156,2.77e-10,59;UBERON:0000990,2.77e-10,59;UBERON:0005911,5.25e-10,82;UBERON:0005153,6.13e-10,37;UBERON:0000065,7.65e-10,54;UBERON:0003100,3.22e-09,41;UBERON:0005178,6.68e-09,34;UBERON:0002224,6.68e-09,34;UBERON:0005157,1.40e-08,47;UBERON:0001048,1.92e-08,160;UBERON:0005181,2.53e-08,35;UBERON:0004175,7.20e-08,25;UBERON:0003133,9.39e-08,48;UBERON:0008947,1.46e-07,38;UBERON:0003258,1.46e-07,38;UBERON:0007196,2.09e-07,15;UBERON:0001558,2.09e-07,15;UBERON:0003104,2.60e-07,160;UBERON:0009142,2.60e-07,160;UBERON:0005795,3.10e-07,22;UBERON:0003134,3.55e-07,37;UBERON:0000474,3.55e-07,37;UBERON:0003975,3.81e-07,22;UBERON:0000166,5.26e-07,22;UBERON:0005256,6.67e-07,122;UBERON:0000033,7.66e-07,56;UBERON:0000915,8.04e-07,52;UBERON:0000072,8.83e-07,47 | |||
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| |||
|short_description=p1@SDC1 | |||
}} |
Revision as of 01:56, 21 January 2014
Short description: | p1@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SDC1_5end |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | 20bp_to_ENST00000447124_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | F8WCX9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.10e-20 | 253 |
endo-epithelial cell | 3.70e-18 | 42 |
endodermal cell | 2.02e-17 | 58 |
respiratory epithelial cell | 4.13e-10 | 13 |
embryonic cell | 3.35e-09 | 250 |
epithelial cell of tracheobronchial tree | 2.40e-07 | 9 |
epithelial cell of lower respiratory tract | 2.40e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.54e-08 | 106 |