FFCP PHASE1:Hg19::chr2:175629135..175629148,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1134 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1955 | |||
|TSSclassifier=strong | |||
|UniProt=E7ENE5,B8ZZD3,F8WDS3 | |||
|association_with_transcript=0bp_to_ENST00000409219,ENST00000409542,ENST00000435083_5end | |||
|coexpression_cluster_id=C913 | |||
|description=CAGE_peak_3_at_CHRNA1_5end | |||
|id=chr2:175629135..175629148,- | |||
|ontology_enrichment_celltype=CL:0000188!1.96e-15!9;CL:0000594!4.96e-07!3;CL:0002590!5.86e-07!3;CL:0000680!6.36e-07!57;CL:0000056!6.36e-07!57;CL:0000355!6.36e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000188;7.45e-21;9!CL:0000515;7.63e-17;3!CL:0000056;9.25e-13;4!CL:0000680;1.54e-12;7!CL:0000123;3.94e-11;2!CL:0000242;3.94e-11;2!CL:0002138;4.29e-08;6!CL:0002144;6.89e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,8.43e-21,9;CL:0000515,7.59e-13,4;CL:0000242,4.49e-11,2;CL:0005020,5.37e-08,6;CL:0002138,5.37e-08,6;CL:0005022,5.37e-08,6;CL:0002144,6.66e-08,3;CL:0000680,2.42e-07,58;CL:0000056,2.42e-07,58;CL:0000355,2.42e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000515;9.25e-13;4!CL:0005022;4.29e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;6.58e-07;1!DOID:4549;6.58e-07;1!DOID:5861;6.58e-07;1!DOID:6496;6.58e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,6.59e-07,1;DOID:4549,6.59e-07,1;DOID:5861,6.59e-07,1;DOID:6496,6.59e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001134!1.13e-10!61;UBERON:0002036!1.13e-10!61;UBERON:0003082!1.13e-10!61;UBERON:0000490!2.67e-10!138;UBERON:0002385!3.74e-10!63;UBERON:0001015!3.74e-10!63;UBERON:0000383!3.74e-10!63;UBERON:0004290!1.37e-08!70;UBERON:0000914!3.60e-07!83;UBERON:0002329!3.60e-07!83;UBERON:0003077!3.60e-07!83;UBERON:0003059!3.60e-07!83;UBERON:0007282!3.60e-07!83;UBERON:0009618!3.60e-07!83;UBERON:0007285!3.60e-07!83;UBERON:0002118!4.58e-07!5;UBERON:0004532!4.58e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;6.89e-54;16!UBERON:0002036;6.89e-54;16!UBERON:0002385;8.95e-26;31!UBERON:0001015;8.95e-26;31!UBERON:0000383;8.95e-26;31!UBERON:0005090;1.39e-11;2!UBERON:0001630;1.39e-11;2!UBERON:0000341;3.94e-11;2!UBERON:0010523;6.89e-08;3!UBERON:0001915;6.89e-08;3!UBERON:0001982;6.89e-08;3!UBERON:0001723;8.19e-08;3!UBERON:0001033;8.19e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,6.98e-14,62;UBERON:0002036,6.98e-14,62;UBERON:0003082,6.98e-14,62;UBERON:0002385,2.35e-13,64;UBERON:0001015,2.35e-13,64;UBERON:0000383,2.35e-13,64;UBERON:0002329,9.62e-12,71;UBERON:0003059,9.62e-12,71;UBERON:0007282,9.62e-12,71;UBERON:0004290,9.62e-12,71;UBERON:0009618,9.62e-12,71;UBERON:0005090,1.09e-11,2;UBERON:0001630,1.09e-11,2;UBERON:0003077,1.54e-11,72;UBERON:0007285,1.54e-11,72;UBERON:0007524,2.43e-11,73;UBERON:0000341,4.05e-11,2;UBERON:0007503,2.01e-10,78;UBERON:0000486,1.28e-09,83;UBERON:0000490,1.39e-08,148;UBERON:0010523,6.66e-08,3;UBERON:0001915,6.66e-08,3;UBERON:0001982,6.66e-08,3;UBERON:0001723,8.48e-08,3;UBERON:0001033,8.48e-08,3;UBERON:0010056,8.48e-08,3;UBERON:0005256,1.27e-07,122;UBERON:0005418,9.67e-07,1;UBERON:0001389,9.67e-07,1;UBERON:0000026,9.67e-07,1;UBERON:0008784,9.67e-07,1;UBERON:0006058,9.67e-07,1;UBERON:0003663,9.67e-07,1;UBERON:0004256,9.67e-07,1;UBERON:0004708,9.67e-07,1;UBERON:0002101,9.67e-07,1;UBERON:0004709,9.67e-07,1;UBERON:0002529,9.67e-07,1;UBERON:0010538,9.67e-07,1;UBERON:0003661,9.67e-07,1;UBERON:0010890,9.67e-07,1;UBERON:0002471,9.67e-07,1;UBERON:0001383,9.67e-07,1;UBERON:0004357,9.67e-07,1;UBERON:0004347,9.67e-07,1;UBERON:0005420,9.67e-07,1;UBERON:0005732,9.67e-07,1;UBERON:0010758,9.67e-07,1;UBERON:0010707,9.67e-07,1;UBERON:0000978,9.67e-07,1;UBERON:0002103,9.67e-07,1;UBERON:0001665,9.67e-07,1;UBERON:0003823,9.67e-07,1;UBERON:0000154,9.67e-07,1;UBERON:0010709,9.67e-07,1;UBERON:0005733,9.67e-07,1;UBERON:0005730,9.67e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.626909442956176,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,0,1.00416183829401,2.41697590265488,0,2.19655851793353,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,1.18800285728205,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0,0,0,0.695582429850461,0,2.16549671641611,1.38895653772983,0.951270761172991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.54209709338717,2.87666851570537,21.4873155887875,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,7.89229874764969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.2944353754572,1.07834031980251,2.30255512089194,3.85942402956686,0.107420244868274,0.580066775656914,3.40906509664404,51.193420496874,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,2.21465597303108,0.190630193923825,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.19762268907841,0,0,0,0,0,0,0,0,1.00177834520615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.40773294189637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.52418000472609,0,0,0,0,0.0969890164884194,29.2127779348866,0.677942222341597,0,0,0.0633107959558787,0,0.0801588202515337,0,0,0,0,0,0,0,0,0,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,2.34167452903441,1.01444720027578,0,0,0,0,0.50313580350515,1.77962244319307,0,0,0,0,0.477890301491107,0,1.39736661188633,0,0,0.521745061811734,0,0,0.813741466409323,0.181848659202559,2.25562169789226,0,0.398095888698616,31.202165643726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383683113910955,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0.198916222116275,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,1.48863353516788,0,0,0,0,0,0.227662191351298,0,0,0,0,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,7.64976398131349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.88457302312737,30.7988420568741,10.4383298820438,0.485710993059139,0,0.397901550322736,0,0,0.659643100472575,1.81155412280008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432626562123789,0,0,0,0,0,0,0,0,0,0,0,1.49263787330687,2.14257988317366,0.0645889098360061,0.0620747142958579,0,0.0636471582781649,0,1.30630048738177,3.76456631193809,0.0673520530145875,0.573777643141411,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@CHRNA1 | |||
}} |
Revision as of 06:43, 21 January 2014
Short description: | p3@CHRNA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CHRNA1_5end |
Coexpression cluster: | C913_mesenchymal_Skeletal_Myoblast_extraskeletal_skeletal_rhabdomyosarcoma_small |
Association with transcript: | 0bp_to_ENST00000409219, ENST00000409542, ENST00000435083_5end |
EntrezGene: | CHRNA1 |
HGNC: | 1955 |
UniProt: | E7ENE5B8ZZD3F8WDS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 8.43e-21 | 9 |
skeletal muscle myoblast | 7.59e-13 | 4 |
Merkel cell | 4.49e-11 | 2 |
lymphangioblast | 5.37e-08 | 6 |
endothelial cell of lymphatic vessel | 5.37e-08 | 6 |
vascular lymphangioblast | 5.37e-08 | 6 |
capillary endothelial cell | 6.66e-08 | 3 |
muscle precursor cell | 2.42e-07 | 58 |
myoblast | 2.42e-07 | 58 |
multi-potent skeletal muscle stem cell | 2.42e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 6.59e-07 | 1 |
extraosseous chondrosarcoma | 6.59e-07 | 1 |
myxoid chondrosarcoma | 6.59e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 6.59e-07 | 1 |