FFCP PHASE1:Hg19::chr3:53080047..53080103,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51460 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20255 | |||
|TSSclassifier=strong | |||
|UniProt=Q9UHJ3,C9IY64,Q402F7 | |||
|association_with_transcript=0bp_to_ENST00000296295,ENST00000358080,ENST00000394752,ENST00000482396,ENST00000485494,NM_001005158,NM_016329,uc003dgg.2,uc003dgh.2_5end | |||
|description=CAGE_peak_1_at_SFMBT1_5end | |||
|id=chr3:53080047..53080103,- | |||
|ontology_enrichment_celltype=CL:0000791!3.32e-07!18;CL:0000789!3.32e-07!18;CL:0002420!3.32e-07!18;CL:0002419!3.32e-07!18;CL:0000790!3.32e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.78e-07;18!CL:0000789;3.78e-07;18!CL:0002419;3.78e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.54e-07,18;CL:0000789,2.54e-07,18;CL:0002420,2.54e-07,18;CL:0002419,2.54e-07,18;CL:0000790,2.54e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;3.78e-07;18 | |||
|ontology_enrichment_disease=DOID:0050687!1.38e-09!143;DOID:305!8.49e-09!106;DOID:162!1.02e-08!235;DOID:14566!7.83e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.56e-09,143;DOID:162,1.78e-08,235;DOID:305,2.26e-08,106;DOID:14566,9.01e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.51e-17!115;UBERON:0001017!1.44e-10!82;UBERON:0005743!2.94e-10!86;UBERON:0000073!2.61e-09!94;UBERON:0001016!2.61e-09!94;UBERON:0001049!2.27e-08!57;UBERON:0005068!2.27e-08!57;UBERON:0006241!2.27e-08!57;UBERON:0007135!2.27e-08!57;UBERON:0000955!1.47e-07!69;UBERON:0006238!1.47e-07!69;UBERON:0004921!4.98e-07!129;UBERON:0004185!4.98e-07!129;UBERON:0000949!6.73e-07!45 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.79e-17,114;UBERON:0011216,1.10e-11,223;UBERON:0001017,4.70e-10,81;UBERON:0001016,5.31e-09,89;UBERON:0001049,6.27e-08,56;UBERON:0005068,6.27e-08,56;UBERON:0006241,6.27e-08,56;UBERON:0007135,6.27e-08,56;UBERON:0000949,3.38e-07,45;UBERON:0000073,4.57e-07,53;UBERON:0002616,4.57e-07,53;UBERON:0000955,4.66e-07,68;UBERON:0006238,4.66e-07,68 | |||
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| |||
|short_description=p1@SFMBT1 | |||
}} |
Revision as of 19:14, 21 January 2014
Short description: | p1@SFMBT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SFMBT1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000296295, ENST00000358080, ENST00000394752, ENST00000482396, ENST00000485494, NM_001005158, NM_016329, uc003dgg.2, uc003dgh.2_5end |
EntrezGene: | SFMBT1 |
HGNC: | 20255 |
UniProt: | Q9UHJ3C9IY64Q402F7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.54e-07 | 18 |
alpha-beta T cell | 2.54e-07 | 18 |
immature T cell | 2.54e-07 | 18 |
mature T cell | 2.54e-07 | 18 |
immature alpha-beta T cell | 2.54e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.79e-17 | 114 |
organ system subdivision | 1.10e-11 | 223 |
central nervous system | 4.70e-10 | 81 |
nervous system | 5.31e-09 | 89 |
neural tube | 6.27e-08 | 56 |
neural rod | 6.27e-08 | 56 |
future spinal cord | 6.27e-08 | 56 |
neural keel | 6.27e-08 | 56 |
endocrine system | 3.38e-07 | 45 |
regional part of nervous system | 4.57e-07 | 53 |
regional part of brain | 4.57e-07 | 53 |
brain | 4.66e-07 | 68 |
future brain | 4.66e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.56e-09 | 143 |
cancer | 1.78e-08 | 235 |
carcinoma | 2.26e-08 | 106 |
disease of cellular proliferation | 9.01e-08 | 239 |