FFCP PHASE1:Hg19::chr3:111852128..111852139,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=257144 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20253 | |||
|TSSclassifier=strong | |||
|UniProt=C9IY73,Q8N6F7 | |||
|association_with_transcript=-11bp_to_ENST00000487901,uc003dys.1,uc003dyt.1_5end | |||
|coexpression_cluster_id=C4267 | |||
|description=CAGE_peak_2_at_GCET2_5end | |||
|id=chr3:111852128..111852139,- | |||
|ontology_enrichment_celltype=CL:0000542!2.13e-46!53;CL:0000051!2.13e-46!53;CL:0000838!4.47e-45!52;CL:0000945!8.55e-24!24;CL:0000826!8.55e-24!24;CL:0000738!1.62e-22!140;CL:0002087!5.17e-20!119;CL:0000791!5.89e-20!18;CL:0000789!5.89e-20!18;CL:0002420!5.89e-20!18;CL:0002419!5.89e-20!18;CL:0000790!5.89e-20!18;CL:0000084!5.75e-19!25;CL:0000827!5.75e-19!25;CL:0000988!1.69e-18!182;CL:0002031!2.69e-18!124;CL:0000037!4.56e-18!172;CL:0000566!4.56e-18!172;CL:0000625!1.41e-16!11;CL:0002032!4.70e-16!165;CL:0000837!4.70e-16!165;CL:0000236!2.25e-12!14;CL:0000080!2.13e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.05e-35;24!CL:0000542;4.28e-28;53!CL:0000625;1.69e-25;11!CL:0000791;1.95e-23;18!CL:0000789;1.95e-23;18!CL:0002419;1.95e-23;18!CL:0000084;6.03e-20;25!CL:0000236;6.03e-12;13!CL:0000453;7.24e-09;5!CL:0002087;7.55e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,3.89e-50,52;CL:0000542,4.44e-49,53;CL:0000051,4.44e-49,53;CL:0000945,1.92e-35,24;CL:0000826,1.92e-35,24;CL:0000625,2.21e-25,11;CL:0000791,1.92e-23,18;CL:0000789,1.92e-23,18;CL:0002420,1.92e-23,18;CL:0002419,1.92e-23,18;CL:0000790,1.92e-23,18;CL:0000738,5.75e-22,136;CL:0000084,5.41e-20,25;CL:0000827,5.41e-20,25;CL:0002087,3.11e-19,115;CL:0002031,3.37e-18,120;CL:0000037,1.47e-16,168;CL:0002032,3.85e-16,161;CL:0000837,3.85e-16,161;CL:0000988,2.18e-15,177;CL:0000236,4.01e-15,14;CL:0000817,4.54e-15,3;CL:0000785,6.41e-11,2;CL:0000955,6.41e-11,2;CL:0000818,6.41e-11,2;CL:0000954,6.41e-11,2;CL:0000816,6.41e-11,2;CL:0000453,4.32e-09,5 | |||
|ontology_enrichment_development_v019=CL:0000051;4.28e-28;53!CL:0000790;1.95e-23;18!CL:0000954;7.74e-11;2 | |||
|ontology_enrichment_disease=DOID:0060058!5.56e-10!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;5.46e-12;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,5.23e-12,10 | |||
|ontology_enrichment_uberon=UBERON:0000178!1.92e-08!15;UBERON:0000179!1.92e-08!15;UBERON:0000463!1.92e-08!15;UBERON:0004177!6.33e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;9.37e-11;2!UBERON:0005058;9.37e-11;2!UBERON:0009113;9.37e-11;2!UBERON:0004177;1.87e-09;5!UBERON:0005057;1.87e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.58e-11,4;UBERON:0005058,2.58e-11,4;UBERON:0009113,2.58e-11,4;UBERON:0003295,2.58e-11,4;UBERON:0005562,2.58e-11,4;UBERON:0004177,2.98e-11,7;UBERON:0005057,2.98e-11,7;UBERON:0003351,1.11e-07,6;UBERON:0001042,1.22e-07,10;UBERON:0009145,1.22e-07,10;UBERON:0000974,1.29e-07,10;UBERON:0006562,6.00e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.13957536094264,2.29881650459848,2.36132343941038,0,0,0,0,0,0,11.310211284724,7.81930778680818,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0.647787332037959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,1.09227722252426,0,1.70692089026603,0.800791974072025,0.574752439954483,0,0,0.569212969109448,1.17447437874188,0.382273228125229,0,0,0,1.37696839079683,0.393010762749165,0.822405995998037,0.167186495390678,0,0.473447805734733,0,0,0.589211814949674,0.221533894583621,0.270803863765016,0.25618263945135,0,0.328875809207352,0.276350017785848,0,1.92772532110679,2.1403266247177,0,0.113309342697566,1.91610246800961,1.03088233644789,0.506039384039006,2.22995790026868,1.30216690771284,3.8018081777935,1.05402583354441,1.91979916731628,1.24930726552346,2.13099526839615,1.64225599384209,0.403213486449465,0.267440195783507,0.579297615531196,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32438929824395,0,0,0.548751427043128,0,0.100528972411631,0.925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0.447792613514241,0.581267877027924,0.383382679165211,0,0.088048434013226,0.414656231081544,0.288239906833923,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0.431255149719035,0.513372145118994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.862856803274467,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,2.02979043692868,0,0,1.19115887728894,1.23408681925858,0,0,0.79312517629427,0,0,0.245040215981032,0.743212700502875,1.73123055571734,2.77453189058815,0.318852545457645,0.199579371432817,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,5.78498585667027,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0,1.03423011972439,0,0,0,0,0,0,0,0,0,0.278847488557207,0.307801034015188,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0.296521128680622,0.617819694732514,0.313265848516366,0,0,0,2.37191225980366,1.76098157038881,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0.293977192243133,0,0.17472666824203,0,0,0,0,0.581934098930517,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0,0,0,0.0607495566580247,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0.496166021811951,0,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.11776494143022,1.86010776438708,1.96278473107013,0,0,0,0.59996218756479,0,0,0,0,0.139879507719444,0,0,0,0,0,0.169732529954025,0,0,0,0,1.81382013502883,0,0,0,0,0,0,0,0,0,0,0,1.27592034051333,0,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,10.947228817799,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308696632431779,0.218559560503957,0,0,0,0,0,0,0,0.187967835959707,0.128915775947154,12.3927033346912,0.71421575442263,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48780113114433,2.11054028605917,0,0,0,0,0,1.34704106029175,0.143444410785353,0,0.0814032686109745,0,0,0,0,0,0.406896178315738,0,0.402547587182052,2.24397944612263 | |||
|short_description=p2@GCET2 | |||
}} |
Revision as of 20:29, 21 January 2014
Short description: | p2@GCET2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GCET2_5end |
Coexpression cluster: | C4267_splenic_plasma_Burkitt_diffuse_xeroderma_b_migratory |
Association with transcript: | -11bp_to_ENST00000487901, uc003dys.1, uc003dyt.1_5end |
EntrezGene: | GCET2 |
HGNC: | 20253 |
UniProt: | C9IY73Q8N6F7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 3.89e-50 | 52 |
lymphocyte | 4.44e-49 | 53 |
common lymphoid progenitor | 4.44e-49 | 53 |
lymphocyte of B lineage | 1.92e-35 | 24 |
pro-B cell | 1.92e-35 | 24 |
CD8-positive, alpha-beta T cell | 2.21e-25 | 11 |
mature alpha-beta T cell | 1.92e-23 | 18 |
alpha-beta T cell | 1.92e-23 | 18 |
immature T cell | 1.92e-23 | 18 |
mature T cell | 1.92e-23 | 18 |
immature alpha-beta T cell | 1.92e-23 | 18 |
leukocyte | 5.75e-22 | 136 |
T cell | 5.41e-20 | 25 |
pro-T cell | 5.41e-20 | 25 |
nongranular leukocyte | 3.11e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 3.37e-18 | 120 |
hematopoietic stem cell | 1.47e-16 | 168 |
hematopoietic oligopotent progenitor cell | 3.85e-16 | 161 |
hematopoietic multipotent progenitor cell | 3.85e-16 | 161 |
hematopoietic cell | 2.18e-15 | 177 |
B cell | 4.01e-15 | 14 |
precursor B cell | 4.54e-15 | 3 |
mature B cell | 6.41e-11 | 2 |
pre-B-II cell | 6.41e-11 | 2 |
transitional stage B cell | 6.41e-11 | 2 |
small pre-B-II cell | 6.41e-11 | 2 |
immature B cell | 6.41e-11 | 2 |
Langerhans cell | 4.32e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.58e-11 | 4 |
hemolymphoid system gland | 2.58e-11 | 4 |
thymic region | 2.58e-11 | 4 |
pharyngeal gland | 2.58e-11 | 4 |
thymus primordium | 2.58e-11 | 4 |
hemopoietic organ | 2.98e-11 | 7 |
immune organ | 2.98e-11 | 7 |
pharyngeal epithelium | 1.11e-07 | 6 |
chordate pharynx | 1.22e-07 | 10 |
pharyngeal region of foregut | 1.22e-07 | 10 |
neck | 1.29e-07 | 10 |
pharynx | 6.00e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 5.23e-12 | 10 |