FFCP PHASE1:Hg19::chr4:14291371..14291399,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:14291371..14291399,- | |||
|id=chr4:14291371..14291399,- | |||
|ontology_enrichment_celltype=CL:0000359!2.53e-15!32;CL:0000680!4.11e-12!57;CL:0000056!4.11e-12!57;CL:0000355!4.11e-12!57;CL:0000192!1.58e-11!42;CL:0000514!1.58e-11!42;CL:0000055!1.50e-09!180;CL:0000187!1.80e-09!54;CL:0000220!4.32e-09!246;CL:0002321!6.72e-09!248;CL:0002494!2.69e-08!16;CL:1000306!3.26e-08!4;CL:0002547!3.26e-08!4;CL:0000183!3.57e-08!59;CL:0000393!6.08e-08!60;CL:0000211!6.08e-08!60;CL:0002159!1.80e-07!13;CL:0000548!1.82e-07!679;CL:0000004!1.82e-07!679;CL:0000255!1.82e-07!679;CL:0000012!2.65e-07!682;CL:0000144!4.13e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.22e-16;32!CL:0002592;2.76e-16;3!CL:0000708;8.83e-16;3!CL:1000306;6.98e-13;4!CL:0002547;6.98e-13;4!CL:0002327;3.03e-12;4!CL:0002595;3.20e-10;5!CL:0000312;6.83e-10;5!CL:0000362;2.48e-09;9!CL:0000192;5.16e-09;43!CL:0000240;2.56e-08;6!CL:0000311;2.56e-08;6!CL:0000079;2.56e-08;6!CL:0000237;2.56e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.32e-17,32;CL:0002592,4.79e-16,3;CL:0000708,1.04e-15,3;CL:1000306,6.48e-13,4;CL:0002547,6.48e-13,4;CL:0000192,1.49e-12,43;CL:0000514,1.49e-12,43;CL:0002327,1.80e-12,4;CL:0000680,1.33e-10,58;CL:0000056,1.33e-10,58;CL:0000355,1.33e-10,58;CL:0002595,2.07e-10,5;CL:0000312,9.43e-10,5;CL:0000187,2.36e-09,55;CL:0000362,3.27e-09,9;CL:0000393,3.13e-08,61;CL:0000211,3.13e-08,61;CL:0000240,3.35e-08,6;CL:0000311,3.35e-08,6;CL:0000079,3.35e-08,6;CL:0000237,3.35e-08,6;CL:0000036,3.35e-08,6;CL:0000357,3.35e-08,6;CL:0000114,3.35e-08,6 | |||
|ontology_enrichment_development_v019=CL:0000514;5.16e-09;43!CL:0000357;2.56e-08;6!CL:0000114;2.56e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;1.11e-07;3!DOID:127;1.11e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,7.65e-08,3;DOID:127,7.65e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0004573!1.96e-15!33;UBERON:0004571!1.96e-15!33;UBERON:0001637!1.44e-13!42;UBERON:0003509!1.44e-13!42;UBERON:0004572!1.44e-13!42;UBERON:0001134!7.47e-11!61;UBERON:0002036!7.47e-11!61;UBERON:0003082!7.47e-11!61;UBERON:0002385!2.75e-10!63;UBERON:0001015!2.75e-10!63;UBERON:0000383!2.75e-10!63;UBERON:0004872!4.41e-10!84;UBERON:0002049!1.63e-09!79;UBERON:0007798!1.63e-09!79;UBERON:0000914!2.06e-09!83;UBERON:0002329!2.06e-09!83;UBERON:0003077!2.06e-09!83;UBERON:0003059!2.06e-09!83;UBERON:0007282!2.06e-09!83;UBERON:0009618!2.06e-09!83;UBERON:0007285!2.06e-09!83;UBERON:0004535!4.77e-09!110;UBERON:0000486!1.22e-08!82;UBERON:0004290!1.39e-08!70;UBERON:0001009!1.43e-08!113;UBERON:0001981!1.62e-08!60;UBERON:0007500!1.62e-08!60;UBERON:0004537!1.62e-08!60;UBERON:0006965!1.62e-08!60;UBERON:0000415!3.26e-08!4;UBERON:0007240!3.26e-08!4;UBERON:0005742!3.26e-08!4;UBERON:0005734!3.26e-08!4;UBERON:0004664!3.26e-08!4;UBERON:0004663!3.26e-08!4;UBERON:0000119!1.31e-07!312;UBERON:0000490!7.50e-07!138;UBERON:0000947!9.44e-07!21;UBERON:0010191!9.44e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.24e-20;33!UBERON:0004571;2.24e-20;33!UBERON:0003498;2.76e-16;3!UBERON:0005985;2.76e-16;3!UBERON:0001621;2.76e-16;3!UBERON:0003210;8.83e-16;3!UBERON:0001637;4.32e-14;42!UBERON:0003509;4.32e-14;42!UBERON:0004572;4.32e-14;42!UBERON:0004797;6.98e-13;4!UBERON:0000415;6.98e-13;4!UBERON:0007240;6.98e-13;4!UBERON:0005742;6.98e-13;4!UBERON:0005734;6.98e-13;4!UBERON:0004664;6.98e-13;4!UBERON:0004663;6.98e-13;4!UBERON:0001911;3.03e-12;4!UBERON:0003834;3.20e-10;5!UBERON:0001533;3.20e-10;5!UBERON:0000947;1.90e-08;21!UBERON:0010191;1.90e-08;21!UBERON:0007500;8.25e-08;56!UBERON:0001981;8.25e-08;56!UBERON:0004537;8.25e-08;56!UBERON:0003513;2.02e-07;7!UBERON:0007195;6.76e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,3.18e-24,33;UBERON:0004571,3.18e-24,33;UBERON:0001637,1.92e-18,42;UBERON:0003509,1.92e-18,42;UBERON:0004572,1.92e-18,42;UBERON:0001621,4.79e-16,3;UBERON:0003210,1.04e-15,3;UBERON:0000415,6.48e-13,4;UBERON:0007240,6.48e-13,4;UBERON:0005742,6.48e-13,4;UBERON:0005734,6.48e-13,4;UBERON:0004664,6.48e-13,4;UBERON:0004663,6.48e-13,4;UBERON:0001911,1.80e-12,4;UBERON:0005333,1.80e-12,4;UBERON:0008425,1.80e-12,4;UBERON:0005311,1.80e-12,4;UBERON:0007500,2.41e-12,59;UBERON:0001981,2.41e-12,59;UBERON:0004537,2.41e-12,59;UBERON:0006965,2.41e-12,59;UBERON:0000076,1.21e-10,8;UBERON:0003834,2.07e-10,5;UBERON:0001533,2.07e-10,5;UBERON:0000055,2.34e-10,68;UBERON:0002049,3.11e-10,78;UBERON:0007798,3.11e-10,78;UBERON:0003498,7.86e-10,5;UBERON:0005985,7.86e-10,5;UBERON:0001134,9.14e-10,62;UBERON:0002036,9.14e-10,62;UBERON:0003082,9.14e-10,62;UBERON:0004872,2.03e-09,83;UBERON:0002385,2.19e-09,64;UBERON:0001015,2.19e-09,64;UBERON:0000383,2.19e-09,64;UBERON:0000947,1.88e-08,21;UBERON:0010191,1.88e-08,21;UBERON:0002329,3.13e-08,71;UBERON:0003059,3.13e-08,71;UBERON:0007282,3.13e-08,71;UBERON:0004290,3.13e-08,71;UBERON:0009618,3.13e-08,71;UBERON:0003077,4.39e-08,72;UBERON:0007285,4.39e-08,72;UBERON:0007524,6.10e-08,73;UBERON:0004797,1.46e-07,7;UBERON:0003513,1.49e-07,7;UBERON:0007503,2.76e-07,78;UBERON:0007195,6.96e-07,1 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0.74259811776028,0.994192127183747,0.672325146451775,0,0,0,0,0.612002073732759,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0.221729397462564,0.263504357079378,0,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.03913227994991,2.91300197789081,0.573673241497627,2.4826786753885,0.560677600142307,0,0.49333509683432,0,0,0.326923806226917,0.151357427644931,0.576175924479999,0,0,0,0,0,0,0,0.408308342509787,0,0.103325781175765,0,0,0,0,0,0,0.831192346452549,0,0,0,0.794025282120147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.545492241181669,0.573609190778008,0,0,0,0,0,0,0,0,0,1.39310378409594,0.721879481669586,0,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64625428112938,2.24803506515239,1.00528972411631,0.185176890317059,0,0,1.44331342025273,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0.671928512795438,0,1.88072897675981,2.61570544662566,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,1.30788020649984,1.9067954313447,0,0,0,0,0,0.257207374262142,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0.904318131178758,0.871533458600294,0.099972991182057,0,0,0,1.67737398844108,1.14861935834114,0,10.5690353867333,0.821905290201534,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.315404830067869,0.468565659970853,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,1.66435439510497,0,0.744323423456331,0,0,0.256278298511402,0,0.160853921143607,0,0,0,0,0.519254429183621,0.116210378459959,0,0.40101294060657,0.0920809889358963,0.114814448164607,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,1.39453664789186,0.31481234683064,0,0.924100740528266,1.06461206063404,1.73986598415015,0.74129687641568,2.28999818787186,2.232950216158,0.632758849437452,0,0.255897791311334,0,0.318203247925937,0,0,0,0,1.2130948894399,4.75530963519025,1.26377536871694,0,2.92456187557541,0,0,0,0,0,5.30751180192976,1.75380354101505,0,0,0,0,0.281695602532241,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.890469640183247,0,0,0,0,0,0,0,0,0,0,0,0,0,4.44547960578548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65412492502765,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383830394638891,0,0,0,1.62899880526114,1.72844298240254,0.979762080328227,0,0,0.340776043570843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0.378806010550178,0,0,0.457680136793847,0,0.15543720058278,0.295710299979268,0.159296767163702,0,0,0.414706207840855,0,0,0,0.380805212168795,0,0,0,0,0.398095888698616,1.20008329398946,0,0,0,0,0,0,0.906823702049089,1.389134845943,0,2.68633261622231,0,0,0.883445729729405,0,0.337884881306145,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10764358210152,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0.982631505060581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:14291371..14291399,- | |||
}} |
Revision as of 00:16, 22 January 2014
Short description: | p@chr4:14291371..14291399, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:14291371..14291399, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.32e-17 | 32 |
smooth muscle cell of the coronary artery | 4.79e-16 | 3 |
leptomeningeal cell | 1.04e-15 | 3 |
fibroblast of tunica adventitia of artery | 6.48e-13 | 4 |
fibroblast of the aortic adventitia | 6.48e-13 | 4 |
smooth muscle cell | 1.49e-12 | 43 |
smooth muscle myoblast | 1.49e-12 | 43 |
mammary gland epithelial cell | 1.80e-12 | 4 |
muscle precursor cell | 1.33e-10 | 58 |
myoblast | 1.33e-10 | 58 |
multi-potent skeletal muscle stem cell | 1.33e-10 | 58 |
smooth muscle cell of the subclavian artery | 2.07e-10 | 5 |
keratinocyte | 9.43e-10 | 5 |
muscle cell | 2.36e-09 | 55 |
epidermal cell | 3.27e-09 | 9 |
electrically responsive cell | 3.13e-08 | 61 |
electrically active cell | 3.13e-08 | 61 |
stratified squamous epithelial cell | 3.35e-08 | 6 |
keratin accumulating cell | 3.35e-08 | 6 |
stratified epithelial cell | 3.35e-08 | 6 |
keratinizing barrier epithelial cell | 3.35e-08 | 6 |
epithelial fate stem cell | 3.35e-08 | 6 |
stratified epithelial stem cell | 3.35e-08 | 6 |
surface ectodermal cell | 3.35e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 7.65e-08 | 3 |
leiomyoma | 7.65e-08 | 3 |